CNNM2

General Information

Gene Name       : CNNM2
Gene ID             : ENSG00000148842.17
Essential Gene : No

Functions

Localization

Domains (AlphaFold: CNNM2)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878CNNM2ENSG00000148842.172.131.771.95ENCSR000AEF
HepG2CNNM2ENSG00000148842.177.555.886.71ENCSR985KAT
K562CNNM2ENSG00000148842.171.491.791.64ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for CNNM2 is not avaliable on ENCORE database.



Proteins bound to RNA
  • CNNM2 RNA is bound by 15 proteins.  







eCLIP assay for CNNM2 is not avaliable on ENCORE database.





15 proteins are bound to CNNM2 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr10104678159104678259+5'-UTR,CDS4.522404.90367K562ZNF622
chr10104679723104679794+CDS5.131598.63033K562RBM15
chr10104678358104678469+CDS3.597244.78418HepG2EIF3H
chr10104679399104679434+CDS3.144083.34231K562RBM15
chr10104679019104679072+CDS4.755845.17013K562RBM15
chr10104712932104713008+intron-Distal3.710313.50219HepG2CSTF2
chr10104754974104755019+intron-Distal4.790604.42691HepG2GTF2F1
chr10104754954104755056+intron-Distal4.231643.24590HepG2ILF3
chr10104726923104726946+intron-Distal5.9171311.08095HepG2ILF3
chr10104754910104754949+intron-Distal4.451143.78681HepG2PCBP2
chr10104754949104755022+intron-Distal6.6137416.44511HepG2PCBP2
chr10104706834104706970+intron-Distal5.9971833.77702HepG2QKI
chr10104699300104699366+intron-Distal3.489463.68462HepG2MATR3
chr10104699205104699277+intron-Distal3.493153.39827HepG2MATR3
chr10104744865104744928+intron-Distal3.731483.43813HepG2HNRNPC
chr10104720556104720612+intron-Distal3.543724.25372HepG2HNRNPC
chr10104754974104755047+intron-Distal4.529355.97952K562ILF3
chr10104726888104726923+intron-Distal5.9321611.27366HepG2ILF3
chr10104683524104683605+intron-Distal5.3635510.79727HepG2QKI
chr10104687919104687965+intron-Distal5.085956.93116HepG2QKI
chr10104705285104705356+intron-Distal4.144797.83211HepG2HNRNPK
chr10104754947104755043+intron-Distal4.472845.15063HepG2CSTF2T
chr10104753308104753415+intron-Distal3.455193.11000HepG2HNRNPM
chr10104701963104702099+intron-Distal4.016723.45317HepG2HNRNPL
chr10104699056104699159+intron-Distal4.071545.28137HepG2MATR3
chr10104814387104814449+intron-Distal3.520053.32861HepG2U2AF2
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for CNNM2 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for CNNM2 is not available on ENCORE database.

  • 79 RBPs can affect the levels of CNNM2.  








The Knockdown/knockout RNA-Seq assay for CNNM2 is not available on ENCORE database.





79 RBPs can affect the gene expression of CNNM2 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
CNNM2ENSG00000148842.13344.47580765.93620-1.1528025.5585024.13870HepG2ACO1
CNNM2ENSG00000148842.131010.865601439.89950-0.510403.747603.14170HepG2AKAP1
CNNM2ENSG00000148842.13586.88110769.51320-0.390903.807002.92000HepG2AKAP8L
CNNM2ENSG00000148842.13309.45410579.62010-0.905407.869106.24240HepG2BCCIP
CNNM2ENSG00000148842.13753.85620582.688100.371502.415801.85210HepG2BOP1
CNNM2ENSG00000148842.13937.79560765.743700.292303.004402.31760HepG2CKAP4
CNNM2ENSG00000148842.13298.01750685.22880-1.201209.873208.46000HepG2CNOT7
CNNM2ENSG00000148842.13589.34540802.09490-0.444704.313903.54340HepG2CELF1
CNNM2ENSG00000148842.13473.06660651.20510-0.461103.291802.55570HepG2DDX21
CNNM2ENSG00000148842.13282.04850569.91720-1.014809.403708.07480HepG2DDX55
CNNM2ENSG00000148842.13822.169201184.88480-0.527203.879803.15840HepG2DDX6
CNNM2ENSG00000148842.13947.65770732.786700.370903.826403.05460HepG2DKC1
CNNM2ENSG00000148842.13493.51270680.52470-0.463602.931301.98520HepG2EEF2
CNNM2ENSG00000148842.13662.386901139.01960-0.782008.492207.49150HepG2EIF2S1
CNNM2ENSG00000148842.13416.57990552.40180-0.407102.407601.56000HepG2EIF3D
CNNM2ENSG00000148842.13937.426601258.73180-0.425202.767202.12770HepG2EIF4A3
CNNM2ENSG00000148842.131156.64460815.041200.504904.800803.74470HepG2EIF4G2
CNNM2ENSG00000148842.13941.288001174.04720-0.318803.592302.92100HepG2ETF1
CNNM2ENSG00000148842.13598.90470943.49950-0.655705.187004.16120HepG2FIP1L1
CNNM2ENSG00000148842.13888.090301270.06450-0.516104.412603.55280HepG2FXR1
CNNM2ENSG00000148842.13703.343401178.14110-0.744207.547206.47370HepG2G3BP1
CNNM2ENSG00000148842.13987.955501250.78700-0.340302.240901.44310HepG2G3BP2
CNNM2ENSG00000148842.13429.39610617.22690-0.523503.531902.37350HepG2GNB2L1
CNNM2ENSG00000148842.13329.84260592.52980-0.845108.478107.43840HepG2HNRNPA1
CNNM2ENSG00000148842.13610.55970792.57230-0.376403.310902.30070HepG2HNRNPA2B1
CNNM2ENSG00000148842.13884.71020597.870600.565307.778106.65510HepG2HNRNPF
CNNM2ENSG00000148842.13686.478501193.04450-0.797409.969108.71320HepG2HNRNPK
CNNM2ENSG00000148842.13864.31980578.675000.578704.789903.98460HepG2HNRNPLL
CNNM2ENSG00000148842.13400.18080650.92050-0.701807.265305.83580HepG2HNRNPM
CNNM2ENSG00000148842.13746.854901092.61660-0.548903.866902.40900HepG2HSPD1
CNNM2ENSG00000148842.13893.19490588.732800.601306.924605.82500HepG2IGF2BP1
CNNM2ENSG00000148842.13612.009201123.88630-0.876903.472702.36990HepG2IGF2BP3
CNNM2ENSG00000148842.13853.916401204.54460-0.496303.169002.08620HepG2KHSRP
CNNM2ENSG00000148842.13422.65530604.72800-0.516803.910402.55210HepG2LARP7
CNNM2ENSG00000148842.13468.54250634.91970-0.438402.944001.69170HepG2LIN28B
CNNM2ENSG00000148842.13419.96700606.64090-0.530603.430601.52940HepG2LSM11
CNNM2ENSG00000148842.13840.273701270.50820-0.596505.454104.54220HepG2MAGOH
CNNM2ENSG00000148842.131026.093301307.69710-0.349902.206201.63880HepG2NCBP2
CNNM2ENSG00000148842.13873.92650513.117200.768108.237106.99590HepG2NSUN2
CNNM2ENSG00000148842.13693.42160919.51620-0.407103.123401.41700HepG2NUP35
CNNM2ENSG00000148842.13862.143801164.55500-0.433803.095502.33410HepG2PABPC4
CNNM2ENSG00000148842.13435.37590648.05900-0.573906.388605.18240HepG2PARN
CNNM2ENSG00000148842.13444.47050693.65050-0.642103.829102.61390HepG2PCBP2
CNNM2ENSG00000148842.13351.31740580.18520-0.723704.991102.78050HepG2PHF6
CNNM2ENSG00000148842.131219.58360807.228100.595209.899508.56950HepG2PRPF4
CNNM2ENSG00000148842.13307.64140439.48310-0.514603.046302.20200HepG2PRPF8
CNNM2ENSG00000148842.13936.026101157.90120-0.306903.470402.87270HepG2PTBP1
CNNM2ENSG00000148842.131081.16710816.304800.405303.618502.94860HepG2PUF60
CNNM2ENSG00000148842.13594.62680866.57550-0.543307.846906.95440HepG2PUM1
CNNM2ENSG00000148842.131053.53640780.151900.433305.904105.06480HepG2PUS1
CNNM2ENSG00000148842.13474.69200669.30730-0.495701.988601.38110HepG2RAVER1
CNNM2ENSG00000148842.13472.89690729.20870-0.624805.221803.84150HepG2RBM27
CNNM2ENSG00000148842.13411.40270592.15020-0.525402.937001.84260HepG2RCC2
CNNM2ENSG00000148842.13797.918101288.64790-0.6915011.9559010.98220HepG2NELFE
CNNM2ENSG00000148842.131013.915501200.17310-0.243302.237401.67610HepG2RECQL
CNNM2ENSG00000148842.13860.37400644.040300.417703.126702.40740HepG2RPLP0
CNNM2ENSG00000148842.13349.04160537.54520-0.623005.238804.42340HepG2RPS19
CNNM2ENSG00000148842.13519.86660672.51530-0.371402.228601.50620HepG2RPS2
CNNM2ENSG00000148842.13697.55600583.062000.258601.983501.42310HepG2SAFB2
CNNM2ENSG00000148842.13387.16930539.45670-0.478502.999802.01910HepG2SERBP1
CNNM2ENSG00000148842.13879.695501205.55710-0.454606.316705.48410HepG2SF3B4
CNNM2ENSG00000148842.13472.84250679.93690-0.524006.448005.53170HepG2SMN1
CNNM2ENSG00000148842.13492.86840682.87760-0.470402.482101.57850HepG2SMNDC1
CNNM2ENSG00000148842.13910.177401108.32770-0.284203.086402.56690HepG2SRFBP1
CNNM2ENSG00000148842.13726.943801258.32730-0.7916017.0322016.07050HepG2SRSF1
CNNM2ENSG00000148842.13814.40020587.385200.471305.490204.56620HepG2SRSF7
CNNM2ENSG00000148842.13764.789801023.70490-0.420705.485404.75390HepG2SRSF9
CNNM2ENSG00000148842.131204.50230962.292000.323803.754203.17730HepG2SSB
CNNM2ENSG00000148842.13423.94730598.75820-0.498102.806801.69720HepG2STIP1
CNNM2ENSG00000148842.13730.15880916.63440-0.328103.102402.45120HepG2SUCLG1
CNNM2ENSG00000148842.13776.66500564.069800.461303.346202.55730HepG2TARDBP
CNNM2ENSG00000148842.13252.54550380.21050-0.590303.548802.43680HepG2TFIP11
CNNM2ENSG00000148842.131172.491401007.074900.219301.966501.36110HepG2UPF1
CNNM2ENSG00000148842.13658.401501107.58940-0.7504017.4559016.37670HepG2ZNF622
CNNM2ENSG00000148842.13381.51270262.562700.539002.852202.25630K562AQR
CNNM2ENSG00000148842.13230.21000152.795500.591202.369901.56860K562BOP1
CNNM2ENSG00000148842.13348.37180446.66560-0.358602.085101.33580K562DKC1
CNNM2ENSG00000148842.13240.77210166.677100.530502.597701.89590K562EIF2S2
CNNM2ENSG00000148842.13156.39890232.75580-0.573602.867502.25350K562FXR1
CNNM2ENSG00000148842.13403.70660251.668700.681704.130803.11270K562PCBP3
CNNM2ENSG00000148842.13301.50130193.034100.643204.045403.07180K562POLR2G
CNNM2ENSG00000148842.13334.59420243.784000.456702.708101.78030K562SRPK2
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for CNNM2 is not available on ENCORE database.





11 RBPs can affect the splicing of CNNM2 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SECNNM2ENSG00000148842.13chr10+104831530104831596104828385104828479104835842104836027-0.093000.004000.06354excludedHepG2U2AF1
SECNNM2ENSG00000148842.13chr10+1048315301048315961048283851048284791048358421048360270.256000.000090.01219includedHepG2QKI
SECNNM2ENSG00000148842.13chr10+104831530104831596104828385104828479104835842104836027-0.178000.002060.02582excludedHepG2U2AF2
SECNNM2ENSG00000148842.13chr10+1047871211047872161046780731046798581048094631048096070.107000.000220.02303includedHepG2DDX3X
SECNNM2ENSG00000148842.13chr10+1048315301048315961048283851048284791048358421048360270.206000.001100.05568includedHepG2PTBP1
SECNNM2ENSG00000148842.13chr10+1048315301048315961048283851048284791048358421048360270.277000.000390.02056includedHepG2MATR3
SECNNM2ENSG00000148842.13chr10+104685354104685442104678073104679858104687101104687375-0.313000.000030.00665excludedHepG2LARP4
SECNNM2ENSG00000148842.13chr10+1048315301048315961048283851048284791048358421048360270.237000.000240.02293includedHepG2TIAL1
SECNNM2ENSG00000148842.13chr10+104680783104680872104678073104679858104809463104809607-0.102000.002060.07972excludedHepG2SF3B4
SECNNM2ENSG00000148842.13chr10+1048315301048315961048283851048284791048358421048359940.170000.002620.08103includedHepG2HNRNPC
MXECNNM2ENSG00000148842.13chr10+1046807831046808721046853541046854421046780731046798581046871011046873750.124000.008510.071211includedHepG2SFPQ

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for CNNM2 is not avaliable on ENCORE database.