CHST13

General Information

Gene Name       : CHST13
Gene ID             : ENSG00000180767.9
Essential Gene : No

Functions

Localization

Domains (AlphaFold: CHST13)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878CHST13ENSG00000180767.90.000.000.00ENCSR000AEF
HepG2CHST13ENSG00000180767.922.231.8612.04ENCSR985KAT
K562CHST13ENSG00000180767.90.000.000.00ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for CHST13 is not avaliable on ENCORE database.



Proteins bound to RNA
  • CHST13 RNA is bound by 24 proteins.  







eCLIP assay for CHST13 is not avaliable on ENCORE database.





24 proteins are bound to CHST13 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr3126261390126261439+3'-UTR,CDS4.935098.04861HepG2AKAP1
chr3126261725126261781+3'-UTR3.5662915.74795HepG2LARP4
chr3126261471126261504+3'-UTR3.813778.52699HepG2UPF1
chr3126261382126261455+3'-UTR,CDS3.4297113.64041HepG2LARP4
chr3126261586126261681+3'-UTR4.388539.52232HepG2AKAP1
chr3126261504126261590+3'-UTR5.7475541.30822HepG2UPF1
chr3126261728126261778+3'-UTR4.857048.37883HepG2TIA1
chr3126261728126261770+3'-UTR4.721256.11802HepG2AKAP1
chr3126261590126261688+3'-UTR5.0355523.68991HepG2UPF1
chr3126261942126261988+3'-UTR3.396538.46583HepG2UPF1
chr3126261408126261441+3'-UTR,CDS4.131948.08110HepG2UPF1
chr3126261375126261449+3'-UTR,CDS3.112594.94516HepG2IGF2BP1
chr3126261795126261856+3'-UTR3.633759.69812HepG2UPF1
chr3126261395126261485+3'-UTR,CDS3.998944.19096HepG2IGF2BP3
chr3126261416126261454+3'-UTR,CDS3.720645.44144HepG2RPS3
chr3126261528126261586+3'-UTR5.340118.89045HepG2AKAP1
chr3126261725126261778+3'-UTR3.603929.52846HepG2DDX55
chr3126261595126261667+3'-UTR3.1847710.96126HepG2LARP4
chr3126261955126261989+3'-UTR4.502555.58306HepG2AKAP1
chr3126243174126243195+5'-UTR,CDS4.7328236.24463HepG2DDX3X
chr3126243140126243174+5'-UTR5.4812347.84728HepG2DDX3X
chr3126260575126260607+CDS,intron-Proximal3.308329.16455HepG2DDX3X
chr3126260899126260976+CDS4.3339012.40291HepG2SND1
chr3126260666126260720+CDS3.546008.69441HepG2SND1
chr3126255124126255146+CDS3.780806.88189HepG2DDX3X
chr3126261090126261160+CDS3.867047.78097HepG2SND1
chr3126260804126260856+CDS4.488604.60263HepG2LIN28B
chr3126243195126243237+CDS4.3067546.55321HepG2DDX3X
chr3126255173126255240+CDS,intron-Proximal4.443474.28193HepG2AQR
chr3126260788126260899+CDS3.3795110.68649HepG2SND1
chr3126260986126261059+CDS3.569137.54912HepG2SND1
chr3126243235126243275+CDS,intron-Proximal3.031773.27534HepG2DDX59
chr3126260729126260775+CDS3.220937.88496HepG2RPS3
chr3126243237126243274+CDS,intron-Proximal4.0196839.78792HepG2DDX3X
chr3126256412126256468+intron-Distal4.991466.53582HepG2CDC40
chr3126259285126259310+intron-Distal5.948267.55267HepG2HNRNPL
chr3126258738126258795+intron-Distal6.5651748.38633HepG2AGGF1
chr3126248859126248907+intron-Distal3.909343.09122HepG2PTBP1
chr3126255817126255870+intron-Distal6.0981111.30066HepG2AGGF1
chr3126252468126252514+intron-Distal4.199934.28663HepG2SUGP2
chr3126252723126252771+intron-Distal3.045983.10883HepG2SUGP2
chr3126258833126258892+intron-Distal6.7417318.41756HepG2XPO5
chr3126243943126244020+intron-Distal4.373404.03786HepG2NKRF
chr3126244568126244624+intron-Distal4.116313.69819HepG2CSTF2T
chr3126258271126258326+intron-Distal5.1976114.10108HepG2HNRNPL
chr3126256300126256366+intron-Distal3.634583.97029HepG2HNRNPL
chr3126259130126259190+intron-Distal3.019613.89258HepG2YBX3
chr3126255615126255662+intron-Distal5.1956715.72018HepG2AGGF1
chr3126259552126259608+intron-Distal5.012617.50742HepG2AGGF1
chr3126259124126259233+intron-Distal6.7506932.66543HepG2XPO5
chr3126259275126259340+intron-Distal5.170369.92249HepG2AGGF1
chr3126259132126259220+intron-Distal3.921077.99152HepG2CDC40
chr3126258748126258806+intron-Distal5.7681915.65625HepG2XPO5
chr3126244204126244250+intron-Distal3.708323.57490HepG2NKRF
chr3126256324126256364+intron-Distal6.309909.37108HepG2AGGF1
chr3126258903126259012+intron-Distal6.9093243.21324HepG2XPO5
chr3126255502126255568+intron-Distal5.9220618.36008HepG2HNRNPL
chr3126251263126251351+intron-Distal4.329298.31041HepG2SUGP2
chr3126252217126252301+intron-Distal3.318796.28047HepG2SUGP2
chr3126259134126259217+intron-Distal4.072536.89721HepG2LARP4
chr3126255772126255833+intron-Distal4.9543821.78164HepG2XPO5
chr3126252944126253021+intron-Distal4.835427.14375HepG2SUGP2
chr3126256405126256500+intron-Distal4.680168.47823HepG2XPO5
chr3126252063126252118+intron-Distal3.742215.30446HepG2SUGP2
chr3126255759126255834+intron-Distal4.659084.42691HepG2GTF2F1
chr3126258795126258840+intron-Distal6.1348935.74086HepG2AGGF1
chr3126251157126251188+intron-Distal4.173694.28663HepG2SUGP2
chr3126258292126258330+intron-Distal4.5711316.70999HepG2AGGF1
chr3126259058126259108+intron-Distal6.049389.46114HepG2HNRNPL
chr3126258330126258409+intron-Distal5.3468028.36243HepG2AGGF1
chr3126255718126255766+intron-Distal4.0441811.30736HepG2AGGF1
chr3126258198126258292+intron-Distal6.1584554.73134HepG2AGGF1
chr3126255611126255672+intron-Distal5.0367611.87951HepG2HNRNPL
chr3126256136126256218+intron-Distal6.5778013.81473HepG2AGGF1
chr3126251449126251521+intron-Distal3.974197.71515HepG2SUGP2
chr3126252378126252422+intron-Distal3.392573.69184HepG2SUGP2
chr3126255766126255817+intron-Distal5.3269714.47937HepG2AGGF1
chr3126255679126255768+intron-Distal5.1943938.37975HepG2HNRNPL
chr3126258825126258847+intron-Distal4.269063.95534HepG2CDC40
chr3126255489126255574+intron-Distal5.4454123.47647HepG2AGGF1
chr3126251352126251417+intron-Distal5.088738.29733HepG2SUGP2
chr3126258161126258268+intron-Distal4.773224.42691HepG2GTF2F1
chr3126258950126259008+intron-Distal6.5377627.25172HepG2AGGF1
chr3126258939126259012+intron-Distal5.134637.57617HepG2GTF2F1
chr3126248591126248663+intron-Distal5.1102211.26688HepG2PCBP2
chr3126255596126255611+intron-Distal4.577674.21977HepG2HNRNPL
chr3126259075126259121+intron-Distal5.904279.59911HepG2XPO5
chr3126255534126255568+intron-Distal5.324047.42650HepG2XPO5
chr3126255500126255570+intron-Distal3.230484.19640HepG2CDC40
chr3126259278126259316+intron-Distal4.187274.30926HepG2LARP4
chr3126255715126255774+intron-Distal4.078055.95949HepG2CDC40
chr3126257984126258046+intron-Distal3.391624.69270HepG2CDC40
chr3126255773126255842+intron-Distal5.7463625.83591HepG2HNRNPL
chr3126255783126255832+intron-Distal4.476583.50322HepG2CDC40
chr3126255595126255615+intron-Distal5.258766.94016HepG2AGGF1
chr3126255705126255772+intron-Distal3.9660920.45997HepG2XPO5
chr3126258202126258271+intron-Distal4.7196617.96981HepG2HNRNPL
chr3126258949126259002+intron-Distal5.1250918.10445HepG2HNRNPL
chr3126258840126258883+intron-Distal4.8975928.59465HepG2AGGF1
chr3126257993126258045+intron-Distal4.164453.45275HepG2LARP4
chr3126250960126251020+intron-Distal3.643825.32485HepG2SUGP2
chr3126258179126258256+intron-Distal5.374877.75077HepG2CDC40
chr3126257237126257269+intron-Distal5.373246.34931HepG2XPO5
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for CHST13 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for CHST13 is not available on ENCORE database.

  • 71 RBPs can affect the levels of CHST13.  








The Knockdown/knockout RNA-Seq assay for CHST13 is not available on ENCORE database.





71 RBPs can affect the gene expression of CHST13 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
CHST13ENSG00000180767.5946.72030508.794300.895805.834004.52120HepG2ABCF1
CHST13ENSG00000180767.5339.75480679.02830-0.999003.842803.14790HepG2ACO1
CHST13ENSG00000180767.5158.37330611.95430-1.950105.875505.13380HepG2AKAP1
CHST13ENSG00000180767.5100.82400216.41680-1.102006.594105.47050HepG2CALR
CHST13ENSG00000180767.5479.93640678.64170-0.499801.908101.34160HepG2CKAP4
CHST13ENSG00000180767.5201.36490102.085300.979906.050604.54060HepG2YBX3
CHST13ENSG00000180767.5109.14480200.56860-0.877905.076404.25390HepG2CELF1
CHST13ENSG00000180767.5336.33850215.654700.641105.226704.25370HepG2DAZAP1
CHST13ENSG00000180767.5329.74350189.850700.796403.043401.62130HepG2DDX52
CHST13ENSG00000180767.5165.4305096.679000.774902.521501.58440HepG2DHX30
CHST13ENSG00000180767.51270.14300649.584300.9673015.6943014.36110HepG2DKC1
CHST13ENSG00000180767.5279.91180100.236101.481503.295202.53210HepG2DNAJC21
CHST13ENSG00000180767.5232.4433099.356901.226106.924605.95840HepG2DNAJC2
CHST13ENSG00000180767.5468.57560226.421001.049203.294002.29570HepG2EEF2
CHST13ENSG00000180767.5226.55680513.68380-1.181003.414802.56540HepG2FIP1L1
CHST13ENSG00000180767.5177.01210609.90880-1.7847025.0455022.79880HepG2FUBP3
CHST13ENSG00000180767.5435.82120216.278301.010703.400302.69580HepG2GPKOW
CHST13ENSG00000180767.5173.4079099.598200.799903.156901.69720HepG2HNRNPA0
CHST13ENSG00000180767.5279.43950101.196401.465303.822403.08140HepG2HNRNPA1
CHST13ENSG00000180767.5201.69480101.849400.985604.105402.25650HepG2HNRNPD
CHST13ENSG00000180767.5323.43260170.145400.926603.705802.88580HepG2HNRNPF
CHST13ENSG00000180767.5424.59260206.404701.040503.673302.95800HepG2HNRNPLL
CHST13ENSG00000180767.5201.82110111.819900.851805.138304.33300HepG2HNRNPU
CHST13ENSG00000180767.5367.42270167.541901.1328011.252809.88790HepG2IGF2BP1
CHST13ENSG00000180767.5336.82800112.209201.5857011.507008.97930HepG2KHDRBS1
CHST13ENSG00000180767.51208.40690448.808801.428807.277005.91600HepG2LARP4
CHST13ENSG00000180767.5839.84590540.140500.636701.858901.31660HepG2MAGOH
CHST13ENSG00000180767.51162.95170543.083501.098406.556505.61720HepG2MATR3
CHST13ENSG00000180767.5506.96640213.843101.245205.229704.18620HepG2NOL12
CHST13ENSG00000180767.5414.83360183.068301.180103.952403.06370HepG2NSUN2
CHST13ENSG00000180767.5259.32200104.961801.304803.432201.38550HepG2NUFIP2
CHST13ENSG00000180767.5403.6249099.734102.0168024.4191022.40480HepG2PPIL4
CHST13ENSG00000180767.5301.40960531.01420-0.8170010.052909.13740HepG2PTBP1
CHST13ENSG00000180767.5644.69990204.133501.6590029.1409027.48040HepG2PUF60
CHST13ENSG00000180767.5350.49200216.698600.693606.098005.28870HepG2PUM1
CHST13ENSG00000180767.5382.80300216.539200.821902.286201.67440HepG2PUM2
CHST13ENSG00000180767.5352.57990575.04190-0.705706.903605.98220HepG2QKI
CHST13ENSG00000180767.526.97270166.58810-2.626703.136102.38820HepG2RAVER1
CHST13ENSG00000180767.5358.27280728.35040-1.0236011.7188010.14040HepG2RBM15
CHST13ENSG00000180767.5222.52350639.20920-1.522306.046705.35430HepG2RBM22
CHST13ENSG00000180767.5381.68520168.685801.177903.710302.55170HepG2RBM27
CHST13ENSG00000180767.5449.75370136.982301.7150014.2872011.97980HepG2RCC2
CHST13ENSG00000180767.5829.12360590.944600.488505.430404.71300HepG2NELFE
CHST13ENSG00000180767.5712.02740550.426700.371301.913401.38760HepG2RECQL
CHST13ENSG00000180767.5290.06770155.536400.899002.038101.34510HepG2RPS2
CHST13ENSG00000180767.5406.37000118.232301.7811013.9059012.17110HepG2RPS3A
CHST13ENSG00000180767.5306.39830158.808300.948002.771501.69710HepG2RPS5
CHST13ENSG00000180767.5180.2678099.579400.856101.984601.42400HepG2SAFB2
CHST13ENSG00000180767.5274.00310111.331401.299209.065606.81770HepG2SART3
CHST13ENSG00000180767.5249.40310112.215001.152104.167902.28510HepG2SBDS
CHST13ENSG00000180767.5284.82210101.960501.482002.848601.47380HepG2SF1
CHST13ENSG00000180767.5626.46620195.736101.6782028.6031026.81840HepG2SLBP
CHST13ENSG00000180767.5235.2296091.348801.364503.724002.14860HepG2SNRNP200
CHST13ENSG00000180767.5197.45460721.91040-1.870307.242706.53770HepG2SRFBP1
CHST13ENSG00000180767.5266.70970577.02830-1.1134016.0344015.09580HepG2SRSF1
CHST13ENSG00000180767.5291.23120201.554400.530903.218102.55120HepG2SRSF5
CHST13ENSG00000180767.5265.77500167.171600.668804.070303.25170HepG2SRSF7
CHST13ENSG00000180767.5154.94010469.46090-1.5993027.8012026.39760HepG2SRSF9
CHST13ENSG00000180767.51232.01620626.696700.975109.181108.35230HepG2SSB
CHST13ENSG00000180767.5345.44940229.220900.591604.552303.79080HepG2SUCLG1
CHST13ENSG00000180767.598.68000518.71230-2.3941047.6259045.67110HepG2TAF15
CHST13ENSG00000180767.5469.69630201.367201.221805.332504.37260HepG2TARDBP
CHST13ENSG00000180767.5322.59810476.56570-0.562902.134201.39830HepG2TIA1
CHST13ENSG00000180767.5231.02530108.646501.088302.715702.21900HepG2TIAL1
CHST13ENSG00000180767.5264.72860109.625701.2718012.3062011.24050HepG2TRIM56
CHST13ENSG00000180767.5195.03030439.23160-1.171303.298802.61790HepG2U2AF1
CHST13ENSG00000180767.5447.45270211.098501.083708.111506.65000HepG2UBE2L3
CHST13ENSG00000180767.51074.43580596.587600.848702.248501.60810HepG2UPF1
CHST13ENSG00000180767.5327.78120575.97770-0.813303.803403.11840HepG2UTP3
CHST13ENSG00000180767.5303.02250105.910701.516509.094307.14070HepG2XPO5
CHST13ENSG00000180767.5534.99770195.030401.455703.026502.26900HepG2XRN2
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for CHST13 is not available on ENCORE database.





1 RBPs can affect the splicing of CHST13 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SECHST13ENSG00000180767.5chr3+1262600081262601091262551131262551961262605751262621340.240000.000010.00066includedHepG2SF3A3

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for CHST13 is not avaliable on ENCORE database.