CHP1

General Information

Gene Name       : CHP1
Gene ID             : ENSG00000187446.11
Essential Gene : No

Functions

Localization

Domains (AlphaFold: CHP1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878CHP1ENSG00000187446.1122.3021.8822.09ENCSR000AEF
HepG2CHP1ENSG00000187446.1133.4845.7639.62ENCSR985KAT
K562CHP1ENSG00000187446.1148.4345.3246.88ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for CHP1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • CHP1 RNA is bound by 16 proteins.  







eCLIP assay for CHP1 is not avaliable on ENCORE database.





16 proteins are bound to CHP1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr154157388041573926+3'-UTR3.617058.45237K562FAM120A
chr154155495341554986+3'-UTR,CDS,intron-Proximal3.625833.01207K562IGF2BP2
chr154157230941572365+3'-UTR4.178735.47334HepG2LIN28B
chr154157396541574023+3'-UTR3.3676712.56947K562FAM120A
chr154157218941572236+3'-UTR3.380468.65175K562TIA1
chr154157227141572300+3'-UTR3.428136.82132K562YBX3
chr154157365741573727+3'-UTR3.004086.39395K562TIA1
chr154157172441571802+3'-UTR3.7008314.77584K562PUM2
chr154157357041573632+3'-UTR3.4867610.83735K562UPF1
chr154157356341573601+3'-UTR3.495424.09351K562IGF2BP2
chr154157297941573014+3'-UTR3.168106.72941K562FAM120A
chr154157374541573793+3'-UTR3.117936.54251K562UPF1
chr154157219041572225+3'-UTR3.751183.30425K562LIN28B
chr154157165041571707+3'-UTR5.462099.89808K562IGF2BP2
chr154157205841572127+3'-UTR3.7124516.24006K562IGF2BP1
chr154157376641573814+3'-UTR3.294985.65018K562IGF2BP2
chr154157326841573354+3'-UTR3.844103.63094K562HNRNPC
chr154157272641572737+3'-UTR3.9652211.91585K562UPF1
chr154157397541574031+3'-UTR4.1185115.23591K562PABPC4
chr154157184041571892+3'-UTR3.028804.80096K562TIA1
chr154157182741571894+3'-UTR3.0166612.16359K562FAM120A
chr154157230041572356+3'-UTR3.467629.51734K562YBX3
chr154157383641573932+3'-UTR3.3522718.30462K562PUM2
chr154157201441572058+3'-UTR3.043757.79640K562IGF2BP1
chr154157227341572323+3'-UTR4.8492823.73898K562LIN28B
chr154157356241573628+3'-UTR3.675396.25289K562IGF2BP1
chr154157183641571915+3'-UTR3.500069.68137K562IGF2BP2
chr154157367041573746+3'-UTR3.206245.24486K562IGF2BP1
chr154156278741562857+3'-UTR,CDS,intron-Distal,intron-Proximal5.7189011.46503HepG2PRPF8
chr154157386641573944+3'-UTR3.669557.67616K562LIN28B
chr154157200841572090+3'-UTR3.2403612.36293K562TIA1
chr154157105741571086+3'-UTR,CDS,intron-Distal4.888165.29045K562IGF2BP1
chr154157212741572168+3'-UTR3.844366.54109K562IGF2BP2
chr154157200541572101+3'-UTR3.563306.03728K562PCBP1
chr154157213041572159+3'-UTR3.231634.84889K562IGF2BP1
chr154157200241572072+3'-UTR3.7177820.44375K562PTBP1
chr154157239141572440+3'-UTR3.334804.37610K562IGF2BP1
chr154157272341572796+3'-UTR6.3624327.20100K562HNRNPC
chr154157232341572366+3'-UTR3.8760515.68757K562LIN28B
chr154157349341573511+3'-UTR3.6065612.11328K562YBX3
chr154157099141571079+3'-UTR,CDS,intron-Distal3.358905.92180K562IGF2BP2
chr154157273741572798+3'-UTR3.5496322.29770K562UPF1
chr154157167841571740+3'-UTR3.214154.91360K562IGF2BP1
chr154156279541562814+3'-UTR,CDS,intron-Distal3.225155.19341K562FAM120A
chr154157199941572125+3'-UTR3.7278414.60968HepG2PTBP1
chr154157363841573722+3'-UTR3.7212615.91589K562FAM120A
chr154157181541571894+3'-UTR4.8317527.18388K562IGF2BP1
chr154157272741572798+3'-UTR4.4846332.82463K562FAM120A
chr154157248541572528+3'-UTR3.549833.23853K562IGF2BP2
chr154157237041572430+3'-UTR3.223638.30608K562YBX3
chr154157174041571785+3'-UTR3.292583.24714K562IGF2BP1
chr154152349041523583+5'-UTR,CDS,intron-Distal4.1683023.17008K562PCBP1
chr154152346141523603+5'-UTR,CDS,intron-Distal4.9404424.92307HepG2PCBP2
chr154152349941523596+5'-UTR,CDS,intron-Distal3.147934.38307K562IGF2BP2
chr154154913441549186+CDS3.187547.37965K562YBX3
chr154154914241549168+CDS4.471773.18462K562IGF2BP2
chr154152362741523719+CDS,intron-Distal,intron-Proximal4.128199.08333HepG2PRPF8
chr154152359741523694+CDS,intron-Distal,intron-Proximal4.124753.59236HepG2AQR
chr154154916841549188+CDS4.275844.54534K562IGF2BP2
chr154152359341523649+CDS,intron-Distal,intron-Proximal3.769115.44096K562DDX3X
chr154155331841553383+intron-Distal3.478053.30744K562PTBP1
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for CHP1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for CHP1 is not available on ENCORE database.

  • 88 RBPs can affect the levels of CHP1.  








The Knockdown/knockout RNA-Seq assay for CHP1 is not available on ENCORE database.





88 RBPs can affect the gene expression of CHP1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
CHP1ENSG00000187446.71754.540301402.928600.322602.584701.54500HepG2AATF
CHP1ENSG00000187446.73243.746602063.183400.6527013.1686011.69910HepG2CALR
CHP1ENSG00000187446.75813.726002937.894900.9846019.7673017.92100HepG2CIRBP
CHP1ENSG00000187446.72492.875101918.457300.377808.121807.09910HepG2CKAP4
CHP1ENSG00000187446.71064.808601731.49730-0.701404.845003.82730HepG2CNOT7
CHP1ENSG00000187446.72839.546302196.534500.370303.470802.70880HepG2CPSF6
CHP1ENSG00000187446.72202.259401774.646000.311405.271604.16870HepG2DDX19B
CHP1ENSG00000187446.72206.826501548.579600.510906.098705.13670HepG2DDX21
CHP1ENSG00000187446.72045.334201514.804100.433105.100503.85400HepG2DDX24
CHP1ENSG00000187446.74355.440503580.090000.282701.966501.43070HepG2DDX3X
CHP1ENSG00000187446.71960.757002430.16810-0.309602.381201.44090HepG2DDX5
CHP1ENSG00000187446.71929.454703075.20610-0.672507.205606.24810HepG2DDX6
CHP1ENSG00000187446.72789.288401835.786000.6034015.5128014.18470HepG2DKC1
CHP1ENSG00000187446.71386.326701675.92470-0.273703.915203.16690HepG2DNAJC2
CHP1ENSG00000187446.72001.610002956.43430-0.562706.103105.24160HepG2EIF2S1
CHP1ENSG00000187446.71639.675802038.84730-0.314302.802301.62620HepG2EIF2S2
CHP1ENSG00000187446.7967.476701304.52940-0.431203.309602.32720HepG2EIF3D
CHP1ENSG00000187446.72660.107302311.728600.202402.353501.57090HepG2EIF4G1
CHP1ENSG00000187446.71698.998303449.13510-1.0216043.2621041.42200HepG2ETF1
CHP1ENSG00000187446.72357.466201875.075800.330203.300302.38900HepG2EWSR1
CHP1ENSG00000187446.71210.599602200.23370-0.861904.187602.94020HepG2FTO
CHP1ENSG00000187446.71516.860801161.484600.385002.840401.92960HepG2GEMIN5
CHP1ENSG00000187446.73776.695102490.029500.600906.699505.73170HepG2GPKOW
CHP1ENSG00000187446.72728.556401706.915000.6766010.991009.83430HepG2HNRNPA1
CHP1ENSG00000187446.72278.714003096.14850-0.442304.685703.79770HepG2HNRNPK
CHP1ENSG00000187446.71621.862102134.37060-0.396208.113607.01490HepG2HNRNPL
CHP1ENSG00000187446.74821.449702376.273201.0207021.2752019.78780HepG2HNRNPLL
CHP1ENSG00000187446.73907.695903108.376200.330102.703802.03510HepG2IGF2BP2
CHP1ENSG00000187446.72499.994103315.95960-0.407503.127702.46060HepG2MATR3
CHP1ENSG00000187446.72920.493102196.590900.410805.204204.12120HepG2MSI2
CHP1ENSG00000187446.71681.662702409.99300-0.519103.553301.92260HepG2NKRF
CHP1ENSG00000187446.71866.103302323.44030-0.316203.552502.68900HepG2NOL12
CHP1ENSG00000187446.72699.916502106.957800.357703.366402.54150HepG2NSUN2
CHP1ENSG00000187446.72380.479601582.595600.588903.341602.36120HepG2PABPC1
CHP1ENSG00000187446.71400.888101866.87550-0.414306.700105.47100HepG2PARN
CHP1ENSG00000187446.7929.859201489.58040-0.679806.262903.86250HepG2PHF6
CHP1ENSG00000187446.71413.895401682.25770-0.250701.958001.32960HepG2PPIL4
CHP1ENSG00000187446.72030.824202369.74320-0.222702.626401.87010HepG2PRPF4
CHP1ENSG00000187446.72082.462101437.646400.534505.047503.99070HepG2PRPF8
CHP1ENSG00000187446.73828.981302967.376000.367706.754105.97350HepG2PTBP1
CHP1ENSG00000187446.73107.888902217.957800.486606.624605.75550HepG2PUF60
CHP1ENSG00000187446.72102.646802354.49600-0.163201.905601.39340HepG2PUM1
CHP1ENSG00000187446.74715.390801954.427101.2705064.3410062.20190HepG2PUS1
CHP1ENSG00000187446.72536.897003213.90090-0.341304.724703.94070HepG2QKI
CHP1ENSG00000187446.72130.410002726.51720-0.355904.211203.17900HepG2RBM15
CHP1ENSG00000187446.73400.165402882.843300.238002.794902.27480HepG2RBM22
CHP1ENSG00000187446.73518.933802916.761400.270702.499601.85490HepG2RBM25
CHP1ENSG00000187446.72686.195603075.68630-0.195302.429001.84670HepG2RECQL
CHP1ENSG00000187446.71337.646901738.70650-0.378302.108501.40970HepG2RPS3A
CHP1ENSG00000187446.71368.032101679.64360-0.296104.101903.34440HepG2SAFB2
CHP1ENSG00000187446.74395.684103224.772400.4468011.4739010.65300HepG2SRSF1
CHP1ENSG00000187446.71915.821002530.71600-0.401602.692401.70580HepG2SRSF3
CHP1ENSG00000187446.72065.219302623.47700-0.345206.427305.64870HepG2SRSF9
CHP1ENSG00000187446.74406.029602827.056700.6401022.5229021.36780HepG2SSB
CHP1ENSG00000187446.71238.224701812.85410-0.550003.431602.06200HepG2STAU1
CHP1ENSG00000187446.72219.923502490.54330-0.166001.861001.33210HepG2SUCLG1
CHP1ENSG00000187446.73395.199001855.450000.8716011.8635010.62450HepG2SUPV3L1
CHP1ENSG00000187446.73604.336102315.901100.638109.579308.34600HepG2TARDBP
CHP1ENSG00000187446.71412.663201849.10940-0.388403.713203.08050HepG2TRIM56
CHP1ENSG00000187446.73112.874102321.519100.423104.507203.71490HepG2U2AF1
CHP1ENSG00000187446.73435.647201987.498100.789502.192801.32670HepG2U2AF2
CHP1ENSG00000187446.71657.380502293.67810-0.468803.909802.90630HepG2UBE2L3
CHP1ENSG00000187446.7878.221401096.02650-0.319602.072501.41480HepG2UCHL5
CHP1ENSG00000187446.72871.487402425.772500.243303.595302.81530HepG2UPF1
CHP1ENSG00000187446.72859.297202338.674700.289905.227804.35300HepG2ZC3H8
CHP1ENSG00000187446.73710.089702667.883100.4757015.8028014.76500HepG2ZNF622
CHP1ENSG00000187446.74507.390603852.237100.226503.442702.82220K562AGGF1
CHP1ENSG00000187446.75123.354304233.043800.275302.515701.58690K562AKAP8
CHP1ENSG00000187446.74164.277503099.095000.426104.708103.97970K562AQR
CHP1ENSG00000187446.72451.313701963.705600.319902.441501.62690K562BOP1
CHP1ENSG00000187446.73998.472404684.09830-0.228302.369901.46880K562CELF1
CHP1ENSG00000187446.73138.259002368.584500.405805.289803.78760K562DDX3X
CHP1ENSG00000187446.72475.386803363.19620-0.442209.529808.40680K562DDX47
CHP1ENSG00000187446.75399.008004313.332600.323805.428804.14720K562DKC1
CHP1ENSG00000187446.72990.198001844.091400.6972010.251508.38120K562EFTUD2
CHP1ENSG00000187446.71218.081601613.53660-0.405605.280004.19580K562EIF3G
CHP1ENSG00000187446.73005.491403809.49770-0.342005.415904.12000K562EIF4G2
CHP1ENSG00000187446.72903.700002403.127500.272902.502301.30320K562EXOSC5
CHP1ENSG00000187446.73072.349002553.078300.267002.101301.35860K562FIP1L1
CHP1ENSG00000187446.71366.690401800.67190-0.397803.158302.17630K562FTO
CHP1ENSG00000187446.72397.973801993.520700.266402.095901.40060K562GPKOW
CHP1ENSG00000187446.72516.099101702.204700.563704.557603.32410K562KRR1
CHP1ENSG00000187446.75032.193704072.072600.305302.446801.45690K562MAK16
CHP1ENSG00000187446.72126.320602833.13060-0.414005.206403.88980K562MATR3
CHP1ENSG00000187446.74230.106803340.258600.340602.115501.36700K562NAA15
CHP1ENSG00000187446.73237.916002470.990900.389905.434203.71790K562NCBP2
CHP1ENSG00000187446.73274.983102840.415400.205303.473102.64640K562NSUN2
CHP1ENSG00000187446.71432.602701900.03510-0.407404.043902.26650K562PHF6
CHP1ENSG00000187446.72748.191601794.513000.614808.003306.72160K562PRPF8
CHP1ENSG00000187446.77157.911503975.233900.848406.269005.49110K562PUS1
CHP1ENSG00000187446.73110.572102151.375000.531803.157701.62740K562RAVER1
CHP1ENSG00000187446.74655.283003873.291800.265203.133402.50810K562RBM15
CHP1ENSG00000187446.72185.021002644.86340-0.275502.174901.43410K562RBM22
CHP1ENSG00000187446.72935.940202138.847000.456905.248703.33070K562RBM25
CHP1ENSG00000187446.72141.444302783.25040-0.378203.344802.13000K562NELFE
CHP1ENSG00000187446.72095.279003156.51150-0.591207.226305.51300K562RPS3
CHP1ENSG00000187446.73475.736302802.888700.310304.736903.69370K562SF3A3
CHP1ENSG00000187446.72218.422602871.63120-0.372308.126306.62070K562SRPK2
CHP1ENSG00000187446.72116.380801664.365100.346504.349102.69340K562SSB
CHP1ENSG00000187446.72228.503001737.486800.359002.625801.63730K562SUPV3L1
CHP1ENSG00000187446.73219.150702185.803300.558405.576203.91330K562U2AF1
CHP1ENSG00000187446.73136.412202257.399700.474407.457906.13970K562U2AF2
CHP1ENSG00000187446.73076.225102577.056600.255302.301101.50130K562WDR3
CHP1ENSG00000187446.72086.010202679.91360-0.361407.242005.93270K562WDR43
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for CHP1 is not available on ENCORE database.





5 RBPs can affect the splicing of CHP1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SECHP1ENSG00000187446.7chr15+415358644153593741523419415236474154910741549188-0.062000.000030.00057excludedK562AQR
SECHP1ENSG00000187446.7chr15+415549534155508141549052415491884156275441562816-0.058000.000040.00076excludedK562AQR
SECHP1ENSG00000187446.7chr15+4155636241556433415549534155508141562754415628160.086000.000000.00000includedK562HNRNPC
SECHP1ENSG00000187446.7chr15+4152633641526432415234364152364741535864415359370.128000.000000.00000includedK562HNRNPC
MXECHP1ENSG00000187446.7chr15+41554953415550814156275441562816415491074154918841570964415710870.074000.004650.052431includedK562DROSHA
MXECHP1ENSG00000187446.7chr15+41549091415491884155495341555081415358644153593741562754415628160.075000.000000.000011includedK562AQR
MXECHP1ENSG00000187446.7chr15+41549052415491884155495341555081415358644153593741562754415628160.063000.000010.000111includedK562AQR
MXECHP1ENSG00000187446.7chr15+4155495341555081415627544156281641549107415491884157096441571087-0.055000.016830.081482includedHepG2U2AF2
MXECHP1ENSG00000187446.7chr15+41549107415491884155495341555081415358644153593741562754415628160.150000.001060.019711includedHepG2HNRNPUL1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for CHP1 is not avaliable on ENCORE database.