CCSER2

General Information

Gene Name       : CCSER2
Gene ID             : ENSG00000107771.16
Essential Gene : No

Functions

Localization

Domains (AlphaFold: CCSER2)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878CCSER2ENSG00000107771.169.169.509.33ENCSR000AEF
HepG2CCSER2ENSG00000107771.165.086.315.70ENCSR985KAT
K562CCSER2ENSG00000107771.165.066.535.79ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for CCSER2 is not avaliable on ENCORE database.



Proteins bound to RNA
  • CCSER2 RNA is bound by 15 proteins.  







eCLIP assay for CCSER2 is not avaliable on ENCORE database.





15 proteins are bound to CCSER2 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr108618549086185605+5'-UTR,CDS4.565266.33775HepG2GRWD1
chr108608835586088552+5'-UTR3.657484.52274HepG2NCBP2
chr108608842886088471+5'-UTR4.190233.32488HepG2DDX3X
chr108608848386088540+5'-UTR6.058718.23278HepG2DDX3X
chr108613337486133405+CDS,intron-Proximal3.526883.87469HepG2BCLAF1
chr108613341186133564+CDS4.474735.85983HepG2GRWD1
chr108613205386132126+CDS4.194756.84316HepG2BCLAF1
chr108625959286259698+CDS,intron-Distal,intron-Proximal3.655386.17334HepG2U2AF2
chr108617754086177625+CDS,intron-Proximal3.223043.48031HepG2BCLAF1
chr108613149686131578+CDS3.111653.10157K562IGF2BP1
chr108619824386198303+CDS,intron-Distal,intron-Proximal4.300133.47425HepG2U2AF1
chr108613129486131368+CDS3.929783.25872K562IGF2BP1
chr108619838786198460+CDS,intron-Distal4.063203.82000HepG2GRWD1
chr108619823686198293+CDS,intron-Distal,intron-Proximal5.3844018.25831HepG2U2AF2
chr108623732886237396+CDS,intron-Proximal4.580344.70478HepG2BCLAF1
chr108618550086185635+CDS3.821644.96634HepG2PPIG
chr108613129286131400+CDS4.144954.23295HepG2GRWD1
chr108613214186132231+CDS,intron-Proximal4.677369.74753HepG2BCLAF1
chr108619414086194187+intron-Distal4.010163.09122HepG2PTBP1
chr108625169786251756+intron-Distal3.881213.16028HepG2SUGP2
chr108613686886136947+intron-Distal4.063215.78005K562KHSRP
chr108613892086139002+intron-Distal4.208943.42844K562KHSRP
chr108618984486189918+intron-Distal3.151343.11000HepG2HNRNPM
chr108624510886245182+intron-Distal3.294803.35585HepG2QKI
chr108613961186139711+intron-Distal4.318503.66668K562KHSRP
chr108625976886259901+intron-Distal,intron-Proximal4.241533.14375HepG2RBFOX2
chr108611482386114932+intron-Distal4.095257.56258HepG2QKI
chr108619450686194607+intron-Distal4.318463.50357HepG2QKI
chr108621382286213884+intron-Distal3.905603.29248HepG2SUGP2
chr108625527986255338+intron-Distal4.386094.31871HepG2HNRNPM
chr108618747286187572+intron-Distal4.893085.05386K562PTBP1
chr108614405286144123+intron-Distal4.136053.85494HepG2HLTF
chr108617787586177943+intron-Distal4.185133.12827HepG2U2AF2
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for CCSER2 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for CCSER2 is not available on ENCORE database.

  • 79 RBPs can affect the levels of CCSER2.  








The Knockdown/knockout RNA-Seq assay for CCSER2 is not available on ENCORE database.





79 RBPs can affect the gene expression of CCSER2 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
CCSER2ENSG00000107771.11816.44090546.252500.579705.017103.73020HepG2ADAR
CCSER2ENSG00000107771.11846.968101239.23670-0.549104.026103.40150HepG2AKAP1
CCSER2ENSG00000107771.111303.16720861.403300.597207.064906.04830HepG2AUH
CCSER2ENSG00000107771.111114.45600848.840200.392703.167802.53200HepG2BOP1
CCSER2ENSG00000107771.11984.49680755.613900.381603.226502.39990HepG2CALR
CCSER2ENSG00000107771.11691.910001023.41820-0.564703.785802.63210HepG2CCAR1
CCSER2ENSG00000107771.111254.90310974.185200.365202.583401.83390HepG2CIRBP
CCSER2ENSG00000107771.11569.72310685.19310-0.266202.116701.52300HepG2CKAP4
CCSER2ENSG00000107771.111177.20820779.298500.595006.243705.24140HepG2CPSF6
CCSER2ENSG00000107771.11701.06700549.671000.350902.283901.46340HepG2DDX24
CCSER2ENSG00000107771.111665.15540884.945100.911905.395404.04500HepG2DDX59
CCSER2ENSG00000107771.11622.257101019.64400-0.712506.158205.26520HepG2DDX6
CCSER2ENSG00000107771.11347.84000545.18810-0.648307.992206.95510HepG2DNAJC2
CCSER2ENSG00000107771.11368.43190521.45280-0.501102.664201.57290HepG2EFTUD2
CCSER2ENSG00000107771.11713.40610517.273700.463702.526001.47200HepG2AGO1
CCSER2ENSG00000107771.11537.577601054.78440-0.972408.839907.64660HepG2EIF4B
CCSER2ENSG00000107771.111031.76960777.911600.407304.813003.75910HepG2EIF4G1
CCSER2ENSG00000107771.111247.57520988.930300.335103.375402.72100HepG2ETF1
CCSER2ENSG00000107771.11670.562301092.97020-0.704807.125306.05130HepG2FXR1
CCSER2ENSG00000107771.111552.74580883.442000.813505.817004.91240HepG2GPKOW
CCSER2ENSG00000107771.11651.739501026.50440-0.655406.620605.57410HepG2HNRNPK
CCSER2ENSG00000107771.11599.49920718.20900-0.260601.959001.37990HepG2HNRNPL
CCSER2ENSG00000107771.111778.53360843.080801.0768018.6976017.27690HepG2HNRNPLL
CCSER2ENSG00000107771.11358.67370639.79190-0.834906.901605.49830HepG2HNRNPM
CCSER2ENSG00000107771.111471.223801030.754200.513204.595903.74550HepG2IGF2BP2
CCSER2ENSG00000107771.11460.18310626.50420-0.445104.667403.34920HepG2KIF1C
CCSER2ENSG00000107771.11869.732201093.35080-0.330101.907701.35770HepG2MAGOH
CCSER2ENSG00000107771.11518.612801099.50550-1.0841013.3112012.00140HepG2MATR3
CCSER2ENSG00000107771.111263.99660747.518700.757709.432708.11090HepG2NSUN2
CCSER2ENSG00000107771.111098.16320792.499200.470502.110401.35070HepG2PABPC1
CCSER2ENSG00000107771.111216.25770623.321800.964309.649108.33480HepG2PRPF4
CCSER2ENSG00000107771.11675.203201048.76550-0.635309.574408.67830HepG2PTBP1
CCSER2ENSG00000107771.11674.76400792.29930-0.231701.826101.32250HepG2PUM1
CCSER2ENSG00000107771.111055.90110791.709300.415304.176903.36180HepG2PUM2
CCSER2ENSG00000107771.111349.250401135.842200.248301.981001.43850HepG2QKI
CCSER2ENSG00000107771.111102.83100826.578600.415904.732104.10040HepG2RBM22
CCSER2ENSG00000107771.11805.145301167.17660-0.535707.689606.86760HepG2NELFE
CCSER2ENSG00000107771.11856.110401087.06400-0.344603.661202.96530HepG2RECQL
CCSER2ENSG00000107771.111043.26170664.612800.650404.488903.64810HepG2RPLP0
CCSER2ENSG00000107771.111224.67600698.804400.809306.208904.83360HepG2RPS10
CCSER2ENSG00000107771.11654.93410382.320700.776506.776105.60760HepG2RRP9
CCSER2ENSG00000107771.11354.43830546.44640-0.624506.964306.00960HepG2SAFB2
CCSER2ENSG00000107771.11784.973201091.90300-0.476106.253005.42350HepG2SF3B4
CCSER2ENSG00000107771.11860.50040715.668400.265802.515201.84170HepG2SLBP
CCSER2ENSG00000107771.111530.12250928.529400.720505.303204.21050HepG2SNRNP70
CCSER2ENSG00000107771.111533.83960933.618100.7161014.5822013.67170HepG2SRFBP1
CCSER2ENSG00000107771.11962.541201139.70920-0.243702.254301.81610HepG2SRSF1
CCSER2ENSG00000107771.11735.39540606.195200.278602.404201.75240HepG2SRSF7
CCSER2ENSG00000107771.111084.65870810.650500.420005.658304.97530HepG2SSB
CCSER2ENSG00000107771.11687.09470838.07550-0.286602.538301.93790HepG2SUCLG1
CCSER2ENSG00000107771.11828.20260626.229900.403203.565202.50690HepG2SUPT6H
CCSER2ENSG00000107771.11832.25270498.529600.739206.790605.80480HepG2SUPV3L1
CCSER2ENSG00000107771.111121.48280821.619600.448803.817302.98120HepG2TARDBP
CCSER2ENSG00000107771.111207.50040793.170500.606206.405005.46700HepG2U2AF1
CCSER2ENSG00000107771.11710.17580970.15700-0.450005.819604.86650HepG2UPF1
CCSER2ENSG00000107771.11796.72090997.19190-0.323803.118902.01370HepG2UTP18
CCSER2ENSG00000107771.11552.30030936.64970-0.7621013.0629011.90300HepG2UTP3
CCSER2ENSG00000107771.11742.55630615.114400.271502.284001.66620HepG2ZC3H8
CCSER2ENSG00000107771.111463.221201066.988100.455508.810707.97650HepG2ZNF622
CCSER2ENSG00000107771.111041.43460710.753000.551103.582602.09300HepG2ZRANB2
CCSER2ENSG00000107771.11418.23110516.69290-0.305001.935101.44450K562AGGF1
CCSER2ENSG00000107771.11436.84200590.49090-0.434802.380501.82980K562AQR
CCSER2ENSG00000107771.11394.87120564.09180-0.514504.609403.39580K562ATP5C1
CCSER2ENSG00000107771.11168.44410297.42190-0.820203.325001.91440K562EEF2
CCSER2ENSG00000107771.11332.06860204.050200.702502.697501.70980K562EIF3A
CCSER2ENSG00000107771.11455.11440351.391900.373002.042401.33450K562EIF4A3
CCSER2ENSG00000107771.11179.87280316.44790-0.815006.875704.92880K562EIF4B
CCSER2ENSG00000107771.11625.25060799.01270-0.353803.035302.05240K562EIF4G2
CCSER2ENSG00000107771.11546.22350365.432900.579803.573702.90000K562FXR1
CCSER2ENSG00000107771.11345.08150470.82600-0.448302.473501.31300K562HNRNPK
CCSER2ENSG00000107771.11458.71780589.53640-0.362002.081701.32100K562METAP2
CCSER2ENSG00000107771.11398.44940591.12040-0.569106.583205.49910K562NSUN2
CCSER2ENSG00000107771.11585.73730821.01110-0.487104.341002.58940K562PNPT1
CCSER2ENSG00000107771.11444.54210616.62350-0.472103.219302.32240K562PPIG
CCSER2ENSG00000107771.11356.66310481.35020-0.432502.934502.25330K562PTBP1
CCSER2ENSG00000107771.111379.60410871.780600.662107.934206.54500K562PUF60
CCSER2ENSG00000107771.11329.09290461.55120-0.488003.169402.26380K562RBM22
CCSER2ENSG00000107771.11413.53890284.971300.537102.969102.12220K562RPS19
CCSER2ENSG00000107771.11560.87990326.258300.781602.418801.32580K562SF1
CCSER2ENSG00000107771.11298.46960445.66290-0.578403.965602.66940K562SRSF5
CCSER2ENSG00000107771.11316.93070477.57560-0.591604.116203.24770K562TARDBP
CCSER2ENSG00000107771.11336.13630460.67630-0.454702.967502.11640K562TIA1
CCSER2ENSG00000107771.11319.27690452.06690-0.501703.228002.03410K562TRA2A
CCSER2ENSG00000107771.11593.14670380.869800.639003.787602.46550K562U2AF1
CCSER2ENSG00000107771.11619.84390393.291400.656206.819605.56550K562U2AF2
CCSER2ENSG00000107771.11395.23900626.77500-0.665206.849305.77470K562UPF1
CCSER2ENSG00000107771.11414.55060536.31560-0.371502.379701.56590K562WDR3
CCSER2ENSG00000107771.11438.66650557.67830-0.346302.845701.98750K562WDR43
CCSER2ENSG00000107771.11519.72430665.19170-0.356002.291301.51760K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for CCSER2 is not available on ENCORE database.





2 RBPs can affect the splicing of CCSER2 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SECCSER2ENSG00000107771.11chr10+8625963086259715862373308623742086273204862733230.155000.001480.09897includedHepG2G3BP1
A3SSCCSER2ENSG00000107771.11chr10+8613335486133571861333748613357186130769861322250.350000.002640.01647longerK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for CCSER2 is not avaliable on ENCORE database.