CCDC115

General Information

Gene Name       : CCDC115
Gene ID             : ENSG00000136710.9
Essential Gene : Yes

Functions

Localization

Domains (AlphaFold: CCDC115)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878CCDC115ENSG00000136710.98.3414.8111.57ENCSR000AEF
HepG2CCDC115ENSG00000136710.920.4316.3718.40ENCSR985KAT
K562CCDC115ENSG00000136710.942.0536.3739.21ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for CCDC115 is not avaliable on ENCORE database.



Proteins bound to RNA
  • CCDC115 RNA is bound by 6 proteins.  







eCLIP assay for CCDC115 is not avaliable on ENCORE database.





6 proteins are bound to CCDC115 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr2131095965131096060-3'-UTR,intron-Distal,intron-Proximal3.256704.44982K562UPF1
chr2131096260131096311-3'-UTR,intron-Distal3.214433.90824K562YBX3
chr2131096370131096420-3'-UTR,intron-Distal3.382607.04063K562YBX3
chr2131096420131096438-3'-UTR,intron-Distal4.661294.98640K562YBX3
chr2131096233131096336-3'-UTR,intron-Distal5.156576.64872K562UPF1
chr2131099587131099718-5'-UTR,CDS,intron-Distal,intron-Proximal3.533955.06399K562DDX3X
chr2131099583131099713-5'-UTR,CDS,intron-Distal,intron-Proximal3.272283.65536K562SRSF1
chr2131099236131099323-CDS,intron-Distal,intron-Proximal3.912705.52342HepG2PPIG
chr2131098577131098639-CDS,intron-Distal,intron-Proximal5.145825.17615K562AQR
chr2131099198131099240-intron-Distal,intron-Proximal4.587755.58015HepG2AQR
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for CCDC115 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for CCDC115 is not available on ENCORE database.

  • 74 RBPs can affect the levels of CCDC115.  








The Knockdown/knockout RNA-Seq assay for CCDC115 is not available on ENCORE database.





74 RBPs can affect the gene expression of CCDC115 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
CCDC115ENSG00000136710.5700.72230475.581700.559003.564002.50150HepG2ABCF1
CCDC115ENSG00000136710.5661.29260433.320500.609803.461002.41410HepG2BCCIP
CCDC115ENSG00000136710.5833.00900495.450800.749505.738404.30950HepG2CCAR1
CCDC115ENSG00000136710.5793.21500587.797300.432302.820702.03930HepG2CIRBP
CCDC115ENSG00000136710.5577.53100395.728900.545306.441105.24840HepG2DDX19B
CCDC115ENSG00000136710.5393.11510615.40480-0.646604.351903.59160HepG2DDX6
CCDC115ENSG00000136710.5624.16080409.374800.608406.516105.55990HepG2DKC1
CCDC115ENSG00000136710.5226.87090385.45020-0.764706.163904.64420HepG2EIF3G
CCDC115ENSG00000136710.5418.51530636.46890-0.604803.368502.61250HepG2EIF4B
CCDC115ENSG00000136710.5461.26030586.65480-0.346902.537001.72850HepG2EIF4G1
CCDC115ENSG00000136710.5268.16720388.94000-0.536403.271502.03960HepG2FASTKD2
CCDC115ENSG00000136710.5434.35980611.79230-0.494203.043602.34740HepG2G3BP1
CCDC115ENSG00000136710.5374.70730253.658600.562803.166802.20090HepG2GEMIN5
CCDC115ENSG00000136710.5602.04500356.169100.757206.140804.59990HepG2GNB2L1
CCDC115ENSG00000136710.5466.13940348.164100.420902.399001.79390HepG2HNRNPA1
CCDC115ENSG00000136710.5539.74150384.719000.488403.244702.59170HepG2HNRNPU
CCDC115ENSG00000136710.5346.13800523.11670-0.595803.400902.48020HepG2LARP4
CCDC115ENSG00000136710.5613.91780366.376400.744606.631304.80020HepG2LIN28B
CCDC115ENSG00000136710.5923.72620679.120800.443702.864802.22120HepG2NCBP2
CCDC115ENSG00000136710.5146.85740391.75020-1.4155019.6774017.94050HepG2PRPF4
CCDC115ENSG00000136710.5465.83810328.566300.503502.460001.69650HepG2PRPF8
CCDC115ENSG00000136710.5417.77220597.08780-0.515204.310703.48380HepG2PUM2
CCDC115ENSG00000136710.5624.39880435.838700.518604.689203.92780HepG2PUS1
CCDC115ENSG00000136710.5853.75380654.185500.384003.610503.04000HepG2RBM22
CCDC115ENSG00000136710.5527.40620341.705900.626103.901002.63770HepG2RCC2
CCDC115ENSG00000136710.5394.18250277.246200.507602.990302.35530HepG2RPS19
CCDC115ENSG00000136710.5631.71370388.079300.702805.704304.58020HepG2RPS2
CCDC115ENSG00000136710.5389.59180278.218000.485602.425601.54250HepG2SERBP1
CCDC115ENSG00000136710.5831.09110437.873800.924407.793606.62220HepG2SF3A3
CCDC115ENSG00000136710.5386.43400655.77280-0.763009.746608.73630HepG2SF3B4
CCDC115ENSG00000136710.5552.79410399.519900.468404.512303.72590HepG2SMN1
CCDC115ENSG00000136710.5498.82420335.702200.571202.548701.79940HepG2SNRNP70
CCDC115ENSG00000136710.5892.86650738.872700.273002.386901.91020HepG2SRFBP1
CCDC115ENSG00000136710.5903.28420684.478600.400104.076303.52980HepG2SRSF1
CCDC115ENSG00000136710.5421.17770556.85440-0.402903.408602.80900HepG2SRSF9
CCDC115ENSG00000136710.5838.70850641.506300.386604.001603.40930HepG2SSB
CCDC115ENSG00000136710.5521.73140373.780700.481003.637903.08110HepG2TIAL1
CCDC115ENSG00000136710.5483.15490377.171100.357202.562802.01590HepG2TRIM56
CCDC115ENSG00000136710.5548.76650410.820100.417602.302301.72410HepG2U2AF1
CCDC115ENSG00000136710.5319.22960582.05260-0.866606.482305.17050HepG2UBE2L3
CCDC115ENSG00000136710.5423.05380300.883700.491502.307501.31470HepG2XPO5
CCDC115ENSG00000136710.5573.02730417.489800.456802.201001.54860HepG2XRN2
CCDC115ENSG00000136710.5817.632601296.49830-0.665107.408906.52380K562AQR
CCDC115ENSG00000136710.5662.31120857.79070-0.373103.329402.10800K562CPEB4
CCDC115ENSG00000136710.51334.446601638.04120-0.295702.711701.74610K562CELF1
CCDC115ENSG00000136710.5639.33850887.62600-0.473405.646804.76610K562DDX47
CCDC115ENSG00000136710.5322.60610464.61390-0.526303.393801.90510K562DHX30
CCDC115ENSG00000136710.5487.63160617.27130-0.340102.665601.48500K562EIF2S1
CCDC115ENSG00000136710.51125.52440775.882300.536607.657806.54900K562EIF2S2
CCDC115ENSG00000136710.5265.07290422.20510-0.671603.156102.07370K562EIF3A
CCDC115ENSG00000136710.5362.81920521.58660-0.523702.832701.78500K562EIF3D
CCDC115ENSG00000136710.5296.37930601.59350-1.0213014.8253012.92670K562EIF3G
CCDC115ENSG00000136710.5812.598201332.16790-0.7132012.8974010.94280K562EIF4G2
CCDC115ENSG00000136710.5332.02020534.44290-0.686805.065703.46560K562FKBP4
CCDC115ENSG00000136710.5736.79280610.596800.270901.870701.35380K562FXR1
CCDC115ENSG00000136710.5468.84940713.97810-0.606806.813605.06940K562GLRX3
CCDC115ENSG00000136710.5533.63150851.42730-0.674008.012006.26330K562HNRNPA1
CCDC115ENSG00000136710.5455.87470615.48740-0.433102.949202.33570K562HNRNPC
CCDC115ENSG00000136710.5398.22300549.65610-0.465003.179101.95050K562HNRNPF
CCDC115ENSG00000136710.5766.53970525.481600.544605.256102.70250K562HNRNPH1
CCDC115ENSG00000136710.5733.76060494.809300.568304.157203.00140K562HNRNPM
CCDC115ENSG00000136710.51336.96400815.452700.713208.140206.79150K562HSPD1
CCDC115ENSG00000136710.5443.89920750.66060-0.7579011.236309.72510K562MTPAP
CCDC115ENSG00000136710.5643.25080834.01910-0.374704.201303.30310K562NSUN2
CCDC115ENSG00000136710.5627.61660474.067300.404702.348901.65550K562PRPF8
CCDC115ENSG00000136710.5961.32610743.025300.371503.186002.47940K562PTBP1
CCDC115ENSG00000136710.51182.705401514.78700-0.357004.069902.89910K562PUM2
CCDC115ENSG00000136710.51547.498801120.327200.465904.515303.84520K562PUS1
CCDC115ENSG00000136710.5631.74610434.067600.541304.413203.03390K562SAFB
CCDC115ENSG00000136710.5434.84030843.19790-0.9554019.4764017.33300K562SRPK2
CCDC115ENSG00000136710.5941.28810728.432400.369702.957702.22950K562SRSF1
CCDC115ENSG00000136710.5311.55720458.97540-0.558903.199602.10470K562SUPV3L1
CCDC115ENSG00000136710.5789.84080488.665400.692608.353006.91900K562SYNCRIP
CCDC115ENSG00000136710.5579.10130737.17820-0.348202.119701.49520K562TARDBP
CCDC115ENSG00000136710.5758.29790934.36370-0.301202.771301.50100K562TROVE2
CCDC115ENSG00000136710.5308.56260475.45500-0.623705.229804.13130K562U2AF2
CCDC115ENSG00000136710.51310.190101638.80960-0.322903.099401.60910K562UBE2L3
CCDC115ENSG00000136710.5606.96800756.68970-0.318102.130101.36340K562WDR3
CCDC115ENSG00000136710.5394.25200786.89810-0.9971020.5890018.61650K562WDR43
CCDC115ENSG00000136710.51100.636301535.86430-0.480705.213903.44340K562WRN
CCDC115ENSG00000136710.5922.260501460.67000-0.663408.999507.31830K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for CCDC115 is not available on ENCORE database.





5 RBPs can affect the splicing of CCDC115 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SECCDC115ENSG00000136710.5chr2-1310971321310973351310961021310968051310984801310986120.467000.000160.08140includedK562TAF15
SECCDC115ENSG00000136710.5chr2-1310971321310973351310961021310968051310984801310986570.140000.000490.00670includedK562AQR
SECCDC115ENSG00000136710.5chr2-131099239131099322131098480131098612131099413131099517-0.069000.000380.00532excludedK562AQR
SECCDC115ENSG00000136710.5chr2-131097132131097335131096102131096805131098480131098612-0.121000.001860.07998excludedK562EFTUD2
SECCDC115ENSG00000136710.5chr2-1310971321310973351310961021310968051310984801310986120.146000.000290.01753includedHepG2SF3B4
SECCDC115ENSG00000136710.5chr2-1310971321310972741310958151310968051310984801310986120.133000.000020.00057includedK562HNRNPC
A3SSCCDC115ENSG00000136710.5chr2-1310984801310987041310984801310986121310992391310993220.055000.020060.09561longerK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for CCDC115 is not avaliable on ENCORE database.