CAMTA1

General Information

Gene Name       : CAMTA1
Gene ID             : ENSG00000171735.18
Essential Gene : No

Functions

Localization

Domains (AlphaFold: CAMTA1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878CAMTA1ENSG00000171735.1879.8376.2278.03ENCSR000AEF
HepG2CAMTA1ENSG00000171735.1834.1058.9446.52ENCSR985KAT
K562CAMTA1ENSG00000171735.1898.74108.15103.44ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for CAMTA1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • CAMTA1 RNA is bound by 31 proteins.  







eCLIP assay for CAMTA1 is not avaliable on ENCORE database.





31 proteins are bound to CAMTA1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr169481166948244+3'-UTR,intron-Distal5.146038.10073K562CPSF6
chr169319306932038+3'-UTR,intron-Distal,intron-Proximal3.969767.01932K562IGF2BP1
chr169320806932182+3'-UTR,intron-Distal3.742763.29239HepG2CSTF2
chr169318546931912+3'-UTR,intron-Distal,intron-Proximal4.030786.42586K562TIA1
chr169319356932001+3'-UTR,intron-Distal,intron-Proximal3.584626.75758K562LSM11
chr169319416932021+3'-UTR,intron-Distal,intron-Proximal4.986888.04428K562TIA1
chr168455676845636+5'-UTR,CDS,intron-Proximal3.699474.27210HepG2NCBP2
chr168455356845645+5'-UTR,CDS,intron-Proximal3.129935.63246K562FTO
chr168802396880311+5'-UTR,CDS,intron-Distal,intron-Proximal3.591697.69287K562DDX3X
chr168455436845638+5'-UTR,CDS,intron-Proximal3.992746.40330K562UCHL5
chr168455216845629+5'-UTR,CDS3.415863.87268K562SRSF1
chr168455216845632+5'-UTR,CDS3.1513212.95562K562DDX3X
chr169482626948310+intron-Distal6.2291511.64117K562FMR1
chr172082557208319+intron-Distal3.309203.33412HepG2HNRNPL
chr168458856845931+intron-Distal3.061933.57583HepG2NKRF
chr177652757765368+intron-Distal5.9558327.24531HepG2FAM120A
chr168460656846160+intron-Distal5.471126.71058HepG2XRN2
chr168468476846954+intron-Distal4.825617.63393K562HNRNPM
chr178158667815942+intron-Distal4.800796.93116HepG2QKI
chr168457596845841+intron-Distal3.208054.50132HepG2NKRF
chr168488626848947+intron-Distal4.275849.78095K562HNRNPM
chr177655737765626+intron-Distal3.709923.01994HepG2GTF2F1
chr168488656848926+intron-Distal4.270763.62238HepG2MATR3
chr177655327765583+intron-Distal4.9087911.80524HepG2CSTF2T
chr177643207764403+intron-Distal6.2549119.76381HepG2CSTF2T
chr172081937208360+intron-Distal5.3958214.13591K562AGGF1
chr168489736849019+intron-Distal4.651656.36768K562HNRNPM
chr168496786849740+intron-Distal4.348165.04868K562HNRNPM
chr171631427163226+intron-Distal6.4161415.69497K562AGGF1
chr169977646997816+intron-Distal5.457258.79520K562AGGF1
chr169974336997511+intron-Distal4.712265.84190HepG2HNRNPL
chr171643667164460+intron-Distal4.564234.89163HepG2HNRNPL
chr168488786848934+intron-Distal5.058416.44072HepG2HNRNPM
chr169362416936330+intron-Distal4.393083.18981K562PTBP1
chr177689767769054+intron-Distal4.742865.07478HepG2U2AF2
chr178159427816040+intron-Distal4.506824.80665HepG2QKI
chr168468636847004+intron-Distal4.278329.30950HepG2SUGP2
chr169978726997978+intron-Distal5.683999.80358HepG2XPO5
chr177650427765096+intron-Distal4.8023111.44859HepG2FAM120A
chr168488776848920+intron-Distal3.534544.02190K562EXOSC5
chr172068767206927+intron-Distal4.834515.63362K562AGGF1
chr169976626997738+intron-Distal3.706714.26114HepG2HNRNPL
chr168509176851021+intron-Distal4.370804.85866HepG2QKI
chr169459236945978+intron-Distal4.914575.04056HepG2RBFOX2
chr177652977765374+intron-Distal5.3020914.57207HepG2CSTF2T
chr168829216882986+intron-Distal4.191584.50052K562HNRNPL
chr177655837765643+intron-Distal4.7070413.38731HepG2CSTF2T
chr177655917765640+intron-Distal4.2944810.97733HepG2FAM120A
chr177657377765771+intron-Distal3.002864.42923HepG2CSTF2T
chr177647207764746+intron-Distal3.079713.68667HepG2FAM120A
chr169972036997261+intron-Distal5.8481012.46128K562AGGF1
chr169971426997203+intron-Distal5.582437.43302K562AGGF1
chr168510296851126+intron-Distal4.655865.97091K562TARDBP
chr169976996997765+intron-Distal4.969575.31214HepG2XPO5
chr168460616846152+intron-Distal4.208327.51028HepG2NKRF
chr168797806879944+intron-Distal4.535784.51080HepG2HNRNPL
chr172085797208636+intron-Distal5.091807.68033K562AGGF1
chr169971826997257+intron-Distal4.522013.80418HepG2AGGF1
chr168486056848669+intron-Distal5.190088.69493K562EXOSC5
chr177647107764758+intron-Distal5.395799.23970HepG2CSTF2T
chr177655677765630+intron-Distal3.233713.51554HepG2PRPF4
chr171643487164478+intron-Distal5.535798.79654HepG2XPO5
chr177652637765348+intron-Distal3.007033.13437HepG2IGF2BP1
chr177657867765864+intron-Distal3.6178112.15225HepG2CSTF2T
chr177656777765737+intron-Distal5.0566714.82746HepG2CSTF2T
chr171630987163218+intron-Distal3.472204.43202K562HNRNPL
chr169978836997974+intron-Distal4.863625.71957HepG2AGGF1
chr171643387164483+intron-Distal6.4954815.23193K562AGGF1
chr168828916882921+intron-Distal3.083173.62826K562HNRNPL
chr177658987765946+intron-Distal4.556583.70058HepG2XPO5
chr168487706848827+intron-Distal3.676016.01105K562HNRNPM
chr177658167765863+intron-Distal3.454725.40194HepG2FAM120A
chr169322066932369+intron-Distal3.033693.74710HepG2HNRNPL
chr168496696849732+intron-Distal4.183804.10336HepG2SUGP2
chr168457766845855+intron-Distal5.030454.92816HepG2XRN2
chr177656777765766+intron-Distal3.376125.71679HepG2FAM120A
chr169978766997988+intron-Distal5.1820920.33798K562AGGF1
chr169973596997396+intron-Distal5.5535710.16517K562AGGF1
chr177651357765162+intron-Distal4.045304.92762HepG2CSTF2T
chr177652957765381+intron-Distal4.937097.45950HepG2PRPF4
chr177650497765090+intron-Distal3.908797.34629HepG2CSTF2T
chr177655547765576+intron-Distal4.835195.74291HepG2FAM120A
chr172071057207170+intron-Distal3.838054.09469HepG2XPO5
chr177648527764918+intron-Distal4.043259.88663HepG2FAM120A
chr177648547764920+intron-Distal4.1756313.54100HepG2CSTF2T
chr177651097765159+intron-Distal4.657269.71261HepG2FAM120A
chr177643367764398+intron-Distal4.8860013.48337HepG2FAM120A
chr169458226945995+intron-Distal4.065676.14899HepG2PCBP2
chr169970936997250+intron-Distal5.7215613.37015HepG2HNRNPL
chr168966416896733+intron-Distal4.066207.46094K562TARDBP
chr172067137206848+intron-Distal4.418903.32571HepG2AGGF1
chr169972756997433+intron-Distal4.8669314.94144HepG2HNRNPL
chr172075867207623+intron-Distal4.515803.42885K562AGGF1
chr177648567764909+intron-Distal4.049103.26022HepG2PRPF4
chr169193576919430+intron-Distal4.033893.87294K562TARDBP
chr175489777549057+intron-Distal4.113043.45317HepG2HNRNPL
chr177654007765503+intron-Distal6.3227018.72851HepG2CSTF2T
chr168966676896746+intron-Distal4.509483.94682K562EIF4G2
chr168487556848803+intron-Distal3.519833.11000HepG2HNRNPM
chr168484226848472+intron-Distal4.923938.12044K562HNRNPM
chr169634876963575+intron-Distal4.374974.66791HepG2CSTF2
chr168469126846963+intron-Distal4.151343.97018HepG2HNRNPM
chr172067447206799+intron-Distal5.234867.43302K562AGGF1
chr169975056997571+intron-Distal4.514354.26705HepG2AGGF1
chr177647777764804+intron-Distal3.022933.85192HepG2CSTF2T
chr169978736998003+intron-Distal3.958629.45051HepG2HNRNPL
chr177689807769064+intron-Distal4.406004.51735HepG2QKI
chr177644787764525+intron-Distal5.147827.44133HepG2CSTF2T
chr169482556948309+intron-Distal,polyA_site5.162166.19429HepG2CSTF2T
chr177653267765366+intron-Distal3.816843.29554HepG2GTF2F1
chr172069067207011+intron-Distal3.888413.19026HepG2HNRNPL
chr169976566997725+intron-Distal4.465734.23722HepG2AGGF1
chr168488876848942+intron-Distal3.568415.06177HepG2SUGP2
chr177654197765492+intron-Distal4.719899.42435HepG2FAM120A
chr168462536846337+intron-Distal3.832834.36583K562XRN2
chr168456526845694+intron-Proximal3.936163.18217HepG2NKRF
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for CAMTA1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for CAMTA1 is not available on ENCORE database.

  • 68 RBPs can affect the levels of CAMTA1.  








The Knockdown/knockout RNA-Seq assay for CAMTA1 is not available on ENCORE database.





68 RBPs can affect the gene expression of CAMTA1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
CAMTA1ENSG00000171735.14632.82150478.436800.403403.767703.07910HepG2ACO1
CAMTA1ENSG00000171735.14672.16760504.036200.415202.396601.42390HepG2AKAP8
CAMTA1ENSG00000171735.14797.64630480.735800.7304011.237009.82570HepG2AKAP8L
CAMTA1ENSG00000171735.14544.82150654.42640-0.264402.101701.44300HepG2DAZAP1
CAMTA1ENSG00000171735.14325.49550422.97330-0.377901.981501.39510HepG2DDX21
CAMTA1ENSG00000171735.14664.75380458.591900.535502.228601.35430HepG2DDX59
CAMTA1ENSG00000171735.14926.28050488.526000.922907.698106.58080HepG2EIF4B
CAMTA1ENSG00000171735.14406.94720618.42980-0.603804.913803.84720HepG2EIF4G2
CAMTA1ENSG00000171735.14901.54960639.171400.496106.062505.23110HepG2ETF1
CAMTA1ENSG00000171735.14631.46600467.572800.433403.203002.30590HepG2EWSR1
CAMTA1ENSG00000171735.14854.25270469.578300.863206.585205.58130HepG2G3BP1
CAMTA1ENSG00000171735.14709.04350498.651000.507703.504602.49570HepG2G3BP2
CAMTA1ENSG00000171735.14800.23770457.793200.805607.362406.34850HepG2GPKOW
CAMTA1ENSG00000171735.14684.33720436.879900.647404.330603.55840HepG2HNRNPLL
CAMTA1ENSG00000171735.14710.34320477.279700.573604.179003.36440HepG2IGF2BP2
CAMTA1ENSG00000171735.14823.64880448.052800.878303.387502.29890HepG2IGF2BP3
CAMTA1ENSG00000171735.14653.89300480.129800.445502.194901.31450HepG2KHSRP
CAMTA1ENSG00000171735.14335.49550509.29480-0.602203.555602.84840HepG2MATR3
CAMTA1ENSG00000171735.14702.70080521.265800.430802.492401.88970HepG2NCBP2
CAMTA1ENSG00000171735.14591.69810387.372900.611004.558403.60440HepG2NSUN2
CAMTA1ENSG00000171735.14542.85630395.981600.455002.648501.88980HepG2PRPF4
CAMTA1ENSG00000171735.14491.48410619.43680-0.333802.072901.54570HepG2PUF60
CAMTA1ENSG00000171735.14747.49130518.169300.528505.155404.34190HepG2QKI
CAMTA1ENSG00000171735.14793.65170534.242500.570904.324903.71490HepG2RBM22
CAMTA1ENSG00000171735.14325.37760433.54640-0.414102.908702.25220HepG2SAFB2
CAMTA1ENSG00000171735.14966.79840615.048300.652404.785503.88400HepG2SF3A3
CAMTA1ENSG00000171735.14714.72660432.428500.724806.865605.79490HepG2SF3B1
CAMTA1ENSG00000171735.14754.78850603.431100.322802.696102.19850HepG2SRFBP1
CAMTA1ENSG00000171735.14668.73110519.945600.363002.872802.39330HepG2SRSF1
CAMTA1ENSG00000171735.14733.88610523.962600.486003.029002.49750HepG2SSB
CAMTA1ENSG00000171735.141208.68840410.323801.5585026.1008024.41270HepG2SUPV3L1
CAMTA1ENSG00000171735.14660.61860467.370600.499204.784804.08040HepG2TAF15
CAMTA1ENSG00000171735.14668.17080425.805600.649903.159702.38990HepG2TARDBP
CAMTA1ENSG00000171735.14342.58410477.26240-0.478304.148203.48590HepG2TRIM56
CAMTA1ENSG00000171735.14518.48290403.917700.360102.012801.38630HepG2XRN2
CAMTA1ENSG00000171735.14952.58420390.739001.2855026.1977024.51380HepG2ZC3H8
CAMTA1ENSG00000171735.14380.13970587.63010-0.628404.933103.27800K562ABCF1
CAMTA1ENSG00000171735.141080.26820597.843500.8534017.2750015.97850K562AGGF1
CAMTA1ENSG00000171735.14832.13860656.926700.341002.301201.41640K562AKAP8
CAMTA1ENSG00000171735.141049.58550622.080000.754508.248307.06050K562AKAP8L
CAMTA1ENSG00000171735.14433.26830688.10430-0.667405.339304.57030K562AQR
CAMTA1ENSG00000171735.14836.11890652.705700.357203.072402.10870K562ATP5C1
CAMTA1ENSG00000171735.14280.45770392.02900-0.483202.481801.65830K562BOP1
CAMTA1ENSG00000171735.14413.99050619.62940-0.581802.790901.72300K562CNOT7
CAMTA1ENSG00000171735.14306.45050416.86150-0.443902.616501.85320K562CPSF6
CAMTA1ENSG00000171735.14728.56400966.80980-0.408203.717302.58060K562CELF1
CAMTA1ENSG00000171735.14363.16100610.66790-0.749809.621808.49400K562DDX47
CAMTA1ENSG00000171735.14192.58420293.67450-0.608703.219901.77370K562DHX30
CAMTA1ENSG00000171735.14881.35700669.422600.396703.885902.82590K562DKC1
CAMTA1ENSG00000171735.14176.59420282.09680-0.675803.788202.19960K562DNAJC21
CAMTA1ENSG00000171735.14142.95920266.83820-0.900403.824202.61840K562EIF3A
CAMTA1ENSG00000171735.14241.87410322.66690-0.415802.259701.53530K562EIF3G
CAMTA1ENSG00000171735.14546.89580786.24770-0.523705.524904.21760K562EIF4G2
CAMTA1ENSG00000171735.14682.16630422.424900.691306.678705.31450K562FIP1L1
CAMTA1ENSG00000171735.14219.93040359.44740-0.708703.809102.72170K562FTO
CAMTA1ENSG00000171735.14215.61980398.01790-0.884306.483505.27080K562GPKOW
CAMTA1ENSG00000171735.14280.41450407.07990-0.537803.291502.64850K562HNRNPC
CAMTA1ENSG00000171735.14392.89680515.24280-0.391102.693901.81350K562HNRNPU
CAMTA1ENSG00000171735.14739.66310572.706100.369002.222001.50610K562HSPD1
CAMTA1ENSG00000171735.14161.33350264.87490-0.715303.966302.18170K562KHDRBS1
CAMTA1ENSG00000171735.14893.44690660.193500.436403.653202.68790K562KIF1C
CAMTA1ENSG00000171735.14829.82480631.958600.392902.612401.57630K562MAK16
CAMTA1ENSG00000171735.14372.76650513.73420-0.462803.286702.27100K562MATR3
CAMTA1ENSG00000171735.141056.32170739.582000.514205.026403.72920K562MBNL1
CAMTA1ENSG00000171735.14904.71860518.392400.803306.542504.97370K562NAA15
CAMTA1ENSG00000171735.14403.98320518.52560-0.360102.754802.00980K562NSUN2
CAMTA1ENSG00000171735.14354.21790595.28280-0.748903.934002.44030K562PABPC1
CAMTA1ENSG00000171735.14676.39370479.548700.496103.753702.77600K562PPIG
CAMTA1ENSG00000171735.14361.46010500.11060-0.468403.425302.69540K562PTBP1
CAMTA1ENSG00000171735.14734.56870894.02360-0.283402.186601.33160K562PUM2
CAMTA1ENSG00000171735.141092.87780616.955500.824808.730707.81470K562PUS1
CAMTA1ENSG00000171735.14861.69230601.111300.519405.615504.79630K562RBM15
CAMTA1ENSG00000171735.14368.21760479.61740-0.381302.173101.43270K562RBM22
CAMTA1ENSG00000171735.14406.03960549.80330-0.437303.641802.82620K562UPF1
CAMTA1ENSG00000171735.14384.69510489.20850-0.346702.542701.72910K562WDR43
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for CAMTA1 is not available on ENCORE database.





11 RBPs can affect the splicing of CAMTA1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SECAMTA1ENSG00000171735.14chr1+693181669319006885151688527069477136947847-0.087000.000420.03069excludedHepG2RBM22
SECAMTA1ENSG00000171735.14chr1+6880240688031068455506845635688515168852700.078000.000320.07566includedK562PUM1
SECAMTA1ENSG00000171735.14chr1+6946299694640669318166931900694771369482480.397000.000130.00241includedHepG2U2AF2
SECAMTA1ENSG00000171735.14chr1+693181669319006885151688527069477136948261-0.055000.006050.06175excludedHepG2U2AF2
SECAMTA1ENSG00000171735.14chr1+6880240688031068455906845635688515168852700.110000.001070.07570includedK562SUPV3L1
SECAMTA1ENSG00000171735.14chr1+6880240688031068455506845635688515168852700.137000.000210.01436includedHepG2SFPQ
SECAMTA1ENSG00000171735.14chr1+6867042686714868455776845635688515168852700.201000.000490.04348includedHepG2DDX6
SECAMTA1ENSG00000171735.14chr1+6880240688031068455906845635688515168852700.093000.001480.03515includedHepG2SRSF1
SECAMTA1ENSG00000171735.14chr1+688024068803106845590684563568851516885270-0.071000.003350.09284excludedK562TARDBP
SECAMTA1ENSG00000171735.14chr1+688024068803106845590684563568851516885270-0.108000.000150.00846excludedK562HNRNPU
SECAMTA1ENSG00000171735.14chr1+693181669319006885151688527069477136947847-0.089000.000120.00687excludedK562HNRNPU
SECAMTA1ENSG00000171735.14chr1+694629969464066885169688527069477136948248-0.389000.002190.04915excludedK562RBM15
SECAMTA1ENSG00000171735.14chr1+694629969464066931816693190069477136948248-0.426000.002670.08393excludedK562PTBP1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for CAMTA1 is not avaliable on ENCORE database.