C16orf52

General Information

Gene Name       : C16orf52
Gene ID             :
Essential Gene : No

Functions

Localization

Domains (AlphaFold: C16orf52)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for C16orf52 is not avaliable on ENCORE database.



Proteins bound to RNA
  • C16orf52 RNA is bound by 20 proteins.  







eCLIP assay for C16orf52 is not avaliable on ENCORE database.





20 proteins are bound to C16orf52 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr162209291422093029+3'-UTR,intron-Distal5.108797.11441K562PUM2
chr162208694322086993+3'-UTR,CDS4.478934.67689HepG2PPIG
chr162208673522086845+3'-UTR,CDS,intron-Proximal3.183324.82455HepG2BUD13
chr162208693022087064+3'-UTR,CDS,intron-Proximal3.190905.73981HepG2GRWD1
chr162209293922093062+3'-UTR,intron-Distal4.170554.13641K562TARDBP
chr162201960322019705+5'-UTR,CDS,intron-Distal4.1521812.12949HepG2GTF2F1
chr162201961122019640+5'-UTR,CDS,intron-Distal5.025247.83501HepG2FAM120A
chr162201950922019571+5'-UTR,intron-Distal4.6657812.03276HepG2DDX3X
chr162201949822019559+5'-UTR,intron-Distal4.171756.35651HepG2NCBP2
chr162201948722019569+5'-UTR,intron-Distal3.066484.68002HepG2FAM120A
chr162201948122019561+5'-UTR,intron-Distal5.462938.41677HepG2GTF2F1
chr162201960722019637+5'-UTR,CDS,intron-Distal3.305576.36668HepG2CSTF2T
chr162201963222019715+5'-UTR,CDS,intron-Distal4.006678.40843HepG2PRPF4
chr162201944822019559+5'-UTR,intron-Distal3.149569.28625HepG2PRPF4
chr162201948222019556+5'-UTR,intron-Distal3.5663112.25376HepG2CSTF2T
chr162201966322019761+5'-UTR,CDS,intron-Distal,intron-Proximal3.898853.48299HepG2SRSF9
chr162201980822019914+intron-Distal,intron-Proximal3.879694.39210HepG2XRN2
chr162201979722019968+intron-Distal,intron-Proximal4.6889018.75483HepG2PRPF4
chr162201990922019975+intron-Distal3.7290412.16447HepG2CSTF2T
chr162201942922019498+intron-Distal5.265169.17384HepG2NCBP2
chr162206126222061343+intron-Distal3.865277.82941HepG2XPO5
chr162206724722067365+intron-Distal3.054276.36816HepG2QKI
chr162202019622020255+intron-Distal4.1728117.18034HepG2CSTF2T
chr162201980222019846+intron-Distal,intron-Proximal3.053543.74766HepG2FAM120A
chr162202020322020243+intron-Distal4.094443.86455HepG2GTF2F1
chr162201998222020042+intron-Distal3.5840410.26241HepG2CSTF2T
chr162201995522020038+intron-Distal3.022866.14357HepG2FAM120A
chr162202286722022954+intron-Distal3.579944.88774HepG2TAF15
chr162201943822019509+intron-Distal3.7997911.34202HepG2DDX3X
chr162201984722019909+intron-Distal4.1768215.24017HepG2CSTF2T
chr162201990922020019+intron-Distal5.210458.73676HepG2GTF2F1
chr162202141022021495+intron-Distal4.0858711.18672HepG2PCBP2
chr162202052422020595+intron-Distal3.991726.08171HepG2QKI
chr162205846322058528+intron-Distal3.805003.77350HepG2CSTF2
chr162202014922020196+intron-Distal3.5960610.95399HepG2CSTF2T
chr162201975522019791+intron-Distal,intron-Proximal4.040317.82628HepG2CSTF2T
chr162202076922020861+intron-Distal4.6297815.28280HepG2PCBP2
chr162201944222019482+intron-Distal3.409566.96229HepG2CSTF2T
chr162202026622020302+intron-Distal3.288646.28777HepG2CSTF2T
chr162206738022067462+intron-Distal3.465323.12625HepG2QKI
chr162201980322019847+intron-Distal,intron-Proximal3.796049.22172HepG2CSTF2T
chr162203227822032315+intron-Distal4.301123.62366HepG2HNRNPM
chr162204536422045469+intron-Distal3.652114.51091HepG2HNRNPL
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for C16orf52 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for C16orf52 is not available on ENCORE database.

  • 62 RBPs can affect the levels of C16orf52.  








The Knockdown/knockout RNA-Seq assay for C16orf52 is not available on ENCORE database.





62 RBPs can affect the gene expression of C16orf52 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
C16orf52ENSG00000185716.7765.36540498.724900.617805.599604.12340HepG2AATF
C16orf52ENSG00000185716.7843.39230704.867600.258802.208901.65290HepG2ACO1
C16orf52ENSG00000185716.71678.242301008.430200.734707.330706.50980HepG2AKAP1
C16orf52ENSG00000185716.71568.530701034.004600.6011010.658509.45750HepG2AUH
C16orf52ENSG00000185716.7387.52530631.38700-0.704204.802203.56560HepG2BCCIP
C16orf52ENSG00000185716.7697.44150473.136500.559704.675403.92210HepG2BOP1
C16orf52ENSG00000185716.7866.18580657.496300.397603.212202.38700HepG2CALR
C16orf52ENSG00000185716.7475.90850651.94150-0.454105.105704.02010HepG2DDX19B
C16orf52ENSG00000185716.71473.82410966.038200.609305.861704.98340HepG2DDX3X
C16orf52ENSG00000185716.7445.40310620.78110-0.479002.528201.78460HepG2DDX55
C16orf52ENSG00000185716.71174.80680829.756500.501603.558002.86560HepG2DDX6
C16orf52ENSG00000185716.7553.89390686.83430-0.310402.294801.64850HepG2DNAJC21
C16orf52ENSG00000185716.7526.86100680.77080-0.369703.720602.98490HepG2DNAJC2
C16orf52ENSG00000185716.7411.97850630.82780-0.614704.332103.20390HepG2EEF2
C16orf52ENSG00000185716.7784.44000506.801500.630104.311302.91620HepG2AGO1
C16orf52ENSG00000185716.7591.51910797.75460-0.431502.672102.08970HepG2EIF2S1
C16orf52ENSG00000185716.7572.27600881.65600-0.623504.687203.85830HepG2EIF4A3
C16orf52ENSG00000185716.71651.930701187.066400.476706.279805.43570HepG2ETF1
C16orf52ENSG00000185716.71448.62860709.698101.0293012.3499010.89390HepG2FIP1L1
C16orf52ENSG00000185716.7340.68400455.99490-0.420602.212001.41720HepG2GEMIN5
C16orf52ENSG00000185716.7946.27680672.999400.491606.735505.29650HepG2HDGF
C16orf52ENSG00000185716.7532.32330771.29580-0.535004.376503.51960HepG2HNRNPC
C16orf52ENSG00000185716.7601.74410766.19640-0.348603.372002.70840HepG2HNRNPU
C16orf52ENSG00000185716.7647.79650894.73380-0.465902.911502.26680HepG2MATR3
C16orf52ENSG00000185716.7826.16410574.226700.524704.355103.35310HepG2MSI2
C16orf52ENSG00000185716.7648.53520482.217700.427402.849001.61890HepG2NAA15
C16orf52ENSG00000185716.71251.18100999.312700.324202.925602.14150HepG2NOL12
C16orf52ENSG00000185716.7629.76580800.40800-0.345903.183102.54020HepG2PCBP1
C16orf52ENSG00000185716.7633.30880519.309800.286202.040101.36840HepG2PRPF4
C16orf52ENSG00000185716.71008.09320814.449900.307602.921102.36170HepG2PTBP1
C16orf52ENSG00000185716.7681.13770953.90870-0.485904.588803.84390HepG2PUF60
C16orf52ENSG00000185716.7963.24360717.966100.423905.406204.59720HepG2PUS1
C16orf52ENSG00000185716.71317.40190882.058900.578608.139407.15520HepG2QKI
C16orf52ENSG00000185716.71751.25020676.334401.3725013.8184012.35240HepG2RAVER1
C16orf52ENSG00000185716.7985.91400783.512200.331402.645201.80410HepG2RBM15
C16orf52ENSG00000185716.71365.95350800.529100.770806.657705.65120HepG2RBM25
C16orf52ENSG00000185716.7385.54730498.28950-0.370102.099501.55710HepG2RPS19
C16orf52ENSG00000185716.7840.587801128.21090-0.424602.361101.61920HepG2RPS3A
C16orf52ENSG00000185716.7588.87710795.71340-0.434305.282304.44200HepG2SMN1
C16orf52ENSG00000185716.7955.88570517.573500.885006.737605.51060HepG2SNRNP70
C16orf52ENSG00000185716.72117.355501120.683100.9178031.6346030.42180HepG2SRFBP1
C16orf52ENSG00000185716.7741.91910885.06800-0.254501.983101.56450HepG2SRSF1
C16orf52ENSG00000185716.71126.46810720.053100.6455012.0882011.07810HepG2SRSF9
C16orf52ENSG00000185716.7998.03380632.023400.659004.053102.58410HepG2SUB1
C16orf52ENSG00000185716.7919.753301071.12930-0.219802.073801.52020HepG2SUCLG1
C16orf52ENSG00000185716.71041.32580795.543600.388303.962903.31090HepG2TAF15
C16orf52ENSG00000185716.7706.02670457.949000.624405.459904.49220HepG2TARDBP
C16orf52ENSG00000185716.71090.09670730.985600.576407.157005.82340HepG2TIA1
C16orf52ENSG00000185716.7477.75360744.50120-0.640007.297406.55560HepG2TIAL1
C16orf52ENSG00000185716.7984.94390678.948300.536603.079901.53070HepG2TRA2A
C16orf52ENSG00000185716.7504.76230751.15840-0.573507.425706.57840HepG2TRIM56
C16orf52ENSG00000185716.7588.07310365.066000.687705.695904.59770HepG2UCHL5
C16orf52ENSG00000185716.7966.83900576.927400.7448013.2442012.07990HepG2UTP3
C16orf52ENSG00000185716.71040.49070664.900700.646004.097702.55370HepG2XRCC5
C16orf52ENSG00000185716.7334.51170657.20930-0.9743018.1602017.06270HepG2ZNF622
C16orf52ENSG00000185716.71052.76260675.537700.640004.648502.92980HepG2ZRANB2
C16orf52ENSG00000185716.7292.67150196.211100.576802.749901.87940K562BOP1
C16orf52ENSG00000185716.7314.34120212.285800.566202.957902.07290K562FMR1
C16orf52ENSG00000185716.7258.98780179.941400.525302.157401.35490K562FTO
C16orf52ENSG00000185716.7273.53880170.089800.685302.920401.95790K562KRR1
C16orf52ENSG00000185716.7154.73730287.13490-0.891906.774705.24760K562MATR3
C16orf52ENSG00000185716.7141.42070279.52000-0.983007.972006.88590K562PTBP1
C16orf52ENSG00000185716.7143.79190234.07360-0.703003.322202.15490K562SRSF4
C16orf52ENSG00000185716.7176.22810258.76510-0.554202.647801.62450K562SRSF5
C16orf52ENSG00000185716.7396.81590277.140500.517802.834201.56610K562STAU1
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for C16orf52 is not available on ENCORE database.





2 RBPs can affect the splicing of C16orf52 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEC16orf52ENSG00000185716.7chr16+2209652822096596220868072208702022096964220970710.270000.002980.05015includedHepG2U2AF1
SEC16orf52ENSG00000185716.7chr16+2209714522097333220969642209707122098377220988540.273000.000000.00000includedHepG2HNRNPL
SEC16orf52ENSG00000185716.7chr16+2209714522097333220969642209707122098377220988540.285000.000030.00366includedK562HNRNPL

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for C16orf52 is not avaliable on ENCORE database.