B3GNTL1

General Information

Gene Name       : B3GNTL1
Gene ID             : ENSG00000175711.8
Essential Gene : No

Functions

Localization

Domains (AlphaFold: B3GNTL1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878B3GNTL1ENSG00000175711.83.333.743.54ENCSR000AEF
HepG2B3GNTL1ENSG00000175711.817.428.5913.01ENCSR985KAT
K562B3GNTL1ENSG00000175711.89.537.948.73ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for B3GNTL1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • B3GNTL1 RNA is bound by 31 proteins.  







eCLIP assay for B3GNTL1 is not avaliable on ENCORE database.





31 proteins are bound to B3GNTL1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr178090169480901818-3'-UTR,intron-Distal,intron-Proximal4.205063.71057HepG2LSM11
chr178090187080901935-3'-UTR,intron-Distal,intron-Proximal3.610343.32861HepG2U2AF2
chr178100643381006495-5'-UTR,CDS,intron-Distal,intron-Proximal5.365596.12902HepG2SF3B4
chr178100654781006649-5'-UTR,CDS,intron-Distal,intron-Proximal3.443305.11891HepG2GRWD1
chr178100660781006681-5'-UTR,CDS,intron-Distal,intron-Proximal3.083583.94546HepG2U2AF2
chr178096299280963086-5'-UTR,CDS,intron-Distal4.7128511.38699HepG2PPIG
chr178100654481006610-5'-UTR,CDS,intron-Distal,intron-Proximal3.854963.86355HepG2PPIG
chr178097235180972397-5'-UTR,CDS,intron-Distal,intron-Proximal3.450733.73413HepG2PPIG
chr178091501380915058-CDS,intron-Distal,intron-Proximal3.803683.86479HepG2PRPF8
chr178100956981009652-CDS,intron-Distal3.919673.33043HepG2NCBP2
chr178091893080919016-CDS,intron-Distal,intron-Proximal4.021914.96634HepG2PPIG
chr178091905080919119-CDS,intron-Distal,intron-Proximal4.557256.12902HepG2SF3B4
chr178096864880968705-intron-Distal4.641625.60609HepG2CSTF2T
chr178091112280911184-intron-Distal5.342929.35305K562EXOSC5
chr178095770480957788-intron-Distal3.048223.27276HepG2HNRNPL
chr178091448680914543-intron-Distal,intron-Proximal3.564013.69382HepG2RBM22
chr178096044280960591-intron-Distal4.872195.74291HepG2FAM120A
chr178092246380922530-intron-Distal5.151937.43360HepG2DDX59
chr178091013880910225-intron-Distal3.234093.17872HepG2BCCIP
chr178097118480971230-intron-Distal3.866603.29554HepG2GTF2F1
chr178091017380910286-intron-Distal4.147746.03765HepG2EXOSC5
chr178092238880922466-intron-Distal4.121283.41442HepG2HNRNPK
chr178100515481005203-intron-Distal4.088734.28663HepG2SUGP2
chr178091675580916792-intron-Distal3.716643.64175HepG2AGGF1
chr178091587280915948-intron-Distal6.7864025.93951K562AGGF1
chr178098979180989931-intron-Distal3.689934.28420HepG2HNRNPM
chr178091709980917214-intron-Distal6.7823576.24599K562AGGF1
chr178091615980916214-intron-Distal4.498125.25929HepG2GTF2F1
chr178091638180916439-intron-Distal4.363164.70962HepG2GTF2F1
chr178092246680922531-intron-Distal3.303033.23948HepG2HNRNPK
chr178091747380917538-intron-Distal4.4727110.16445HepG2AGGF1
chr178091722180917286-intron-Distal4.415544.04407K562HNRNPL
chr178093031480930420-intron-Distal3.957133.54147K562HNRNPM
chr178090357480903619-intron-Distal3.922023.63454HepG2SUGP2
chr178091585480915984-intron-Distal3.9364310.87257HepG2RBFOX2
chr178100458281004728-intron-Distal4.499735.58061HepG2SUGP2
chr178091070180910785-intron-Distal4.320194.66899HepG2HNRNPM
chr178096251980962588-intron-Distal4.640225.74291HepG2FAM120A
chr178096356980963658-intron-Distal,intron-Proximal4.104623.40229HepG2CSTF2T
chr178091652880916619-intron-Distal7.6161149.97721K562AGGF1
chr178091730780917359-intron-Distal3.129657.17366HepG2AGGF1
chr178091233080912378-intron-Distal5.362159.35305K562EXOSC5
chr178096903880969096-intron-Distal3.163673.48399HepG2CSTF2T
chr178091652880916624-intron-Distal4.6753120.55714HepG2AGGF1
chr178097454080974667-intron-Distal5.057634.86763HepG2PCBP2
chr178090296080903082-intron-Distal4.425555.04769HepG2PTBP1
chr178091423980914335-intron-Distal3.324933.54718K562PRPF8
chr178091735980917438-intron-Distal4.7143114.12351HepG2AGGF1
chr178091662880916702-intron-Distal6.2313511.78880HepG2XPO5
chr178096808980968159-intron-Distal4.279335.11753HepG2CSTF2T
chr178097116380971252-intron-Distal3.329963.57490HepG2NKRF
chr178091736880917415-intron-Distal6.7664823.95024K562AGGF1
chr178091695180917097-intron-Distal4.0040212.76185HepG2AGGF1
chr178091310080913163-intron-Distal3.646844.61337K562EXOSC5
chr178091419680914282-intron-Distal3.760703.30664K562NONO
chr178096048080960619-intron-Distal4.4259816.70776HepG2CSTF2T
chr178091586280915941-intron-Distal4.838486.10563K562AKAP8L
chr178091448680914569-intron-Distal,intron-Proximal3.880855.93840HepG2PRPF8
chr178091586380915946-intron-Distal3.351203.87101HepG2NKRF
chr178092301580923098-intron-Distal4.373774.87774HepG2HNRNPK
chr178091730580917349-intron-Distal3.446675.12846K562HNRNPL
chr178096250980962590-intron-Distal5.494528.56618HepG2CSTF2T
chr178091699080917085-intron-Distal3.480004.05663K562HNRNPL
chr178091702080917103-intron-Distal3.8997712.09811HepG2HNRNPL
chr178096264780962760-intron-Distal4.7378014.65414HepG2CSTF2T
chr178092295180923015-intron-Distal3.900993.17235HepG2HNRNPK
chr178093176680931854-intron-Distal3.884344.35339HepG2CSTF2T
chr178095116980951227-intron-Distal4.088733.86809HepG2SUGP2
chr178091617380916211-intron-Distal4.191113.60290K562AKAP8L
chr178097118180971239-intron-Distal4.960168.32666HepG2CSTF2T
chr178097182780971925-intron-Distal3.125414.02266HepG2CSTF2T
chr178091587180915959-intron-Distal3.620575.08364HepG2PRPF4
chr178097100680971044-intron-Distal3.011103.23466HepG2CSTF2T
chr178091710780917191-intron-Distal5.7586516.30531K562HNRNPL
chr178091661980916702-intron-Distal7.4810037.65656K562AGGF1
chr178091795480918032-intron-Distal3.972188.17775HepG2RBFOX2
chr178091586180915946-intron-Distal5.4519021.33860HepG2AGGF1
chr178091586680915950-intron-Distal4.579474.42851K562HNRNPL
chr178096902180969106-intron-Distal3.973553.41442HepG2HNRNPK
chr178093096580931021-intron-Distal4.490714.90578HepG2HNRNPM
chr178100889881008987-intron-Distal5.8908613.60698HepG2RBFOX2
chr178091447580914545-intron-Distal,intron-Proximal3.788094.68902HepG2PPIG
chr178091019080910274-intron-Distal6.2894118.99984K562EXOSC5
chr178093031280930350-intron-Distal4.247673.62366HepG2HNRNPM
chr178091730480917373-intron-Distal4.0535914.90192HepG2HNRNPL
chr178091710380917200-intron-Distal4.5349530.18034HepG2HNRNPL
chr178091653480916616-intron-Distal5.099308.12733K562HNRNPL
chr178091665980916682-intron-Distal3.962933.58513HepG2GTF2F1
chr178097078080970903-intron-Distal3.558413.42785HepG2HNRNPM
chr178096062080960727-intron-Distal4.2201110.53086HepG2CSTF2T
chr178091803280918102-intron-Distal4.075209.97887HepG2RBFOX2
chr178091662480916694-intron-Distal4.3346013.70177HepG2AGGF1
chr178093193680932073-intron-Distal3.123283.94535HepG2CSTF2T
chr178091694780917000-intron-Distal4.511698.95102HepG2HNRNPL
chr178092286880922946-intron-Distal3.381653.47356HepG2HNRNPK
chr178091694480917060-intron-Distal7.8021953.65212K562AGGF1
chr178091636880916427-intron-Distal4.395094.07596K562GTF2F1
chr178091446880914553-intron-Distal,intron-Proximal4.164683.18234K562BUD13
chr178097687780976942-intron-Distal4.496793.85055HepG2XPO5
chr178091016280910190-intron-Distal4.868255.12432K562EXOSC5
chr178091587480915948-intron-Distal4.952835.54520K562GTF2F1
chr178093048280930534-intron-Distal4.643374.12480HepG2HNRNPM
chr178093279180932835-intron-Distal3.832793.16310HepG2CSTF2T
chr178097118180971246-intron-Distal4.452833.19125K562GTF2F1
chr178091665480916689-intron-Distal4.319044.70117K562HNRNPL
chr178091614380916214-intron-Distal4.808826.10679HepG2RBFOX2
chr178091852580918586-intron-Distal4.888905.57311HepG2RBFOX2
chr178091114280911181-intron-Distal4.039483.27829HepG2MATR3
chr178092286380922923-intron-Distal4.903184.73643HepG2DDX59
chr178091430380914406-intron-Distal5.263637.48549HepG2RBFOX2
chr178091852480918603-intron-Distal4.438244.61649HepG2CSTF2T
chr178091181280911857-intron-Distal4.607845.12432K562EXOSC5
chr178091449680914552-intron-Distal,intron-Proximal4.269823.97974HepG2RBFOX2
chr178092603280926133-intron-Distal3.760603.16310HepG2CSTF2T
chr178091629880916363-intron-Distal3.135383.46580HepG2CSTF2T
chr178097427680974425-intron-Distal4.088618.80564HepG2PCBP2
chr178094195280942020-intron-Distal5.056627.61882HepG2PCBP2
chr178091642980916443-intron-Distal5.149907.96015K562AGGF1
chr178091587280915919-intron-Distal3.338054.49514HepG2XPO5
chr178096864380968715-intron-Distal4.535704.35687HepG2DDX59
chr178096286580962908-intron-Distal,intron-Proximal4.787006.32277HepG2CSTF2T
chr178091700080917020-intron-Distal4.209189.18800HepG2HNRNPL
chr178091222980912279-intron-Distal5.302839.35305K562EXOSC5
chr178096246080962519-intron-Distal4.416704.57154HepG2FAM120A
chr178091019780910286-intron-Distal3.415524.28254HepG2MATR3
chr178100911181009187-intron-Distal4.5532510.61789HepG2RBFOX2
chr178091711980917188-intron-Distal4.3556513.77479HepG2AGGF1
chr178091710080917170-intron-Distal4.6415412.09196HepG2XPO5
chr178096550780965581-intron-Distal4.206786.20747HepG2SLTM
chr178100868881008847-intron-Distal6.0915017.05852HepG2RBFOX2
chr178097142980971484-intron-Distal4.279335.11753HepG2CSTF2T
chr178091662480916686-intron-Distal3.9027012.05469HepG2HNRNPL
chr178096036280960577-intron-Distal5.4859611.51099K562NONO
chr178091792780918008-intron-Distal3.960264.59145HepG2XPO5
chr178097117380971233-intron-Distal4.826393.11886K562DROSHA
chr178091119180911238-intron-Distal4.812746.41216K562EXOSC5
chr178091653280916594-intron-Distal3.971626.46708HepG2XPO5
chr178091244680912499-intron-Distal4.524839.69330K562EXOSC5
chr178096035480960407-intron-Distal3.173524.46520HepG2CSTF2T
chr178091676480916783-intron-Distal4.989235.84190HepG2HNRNPL
chr178100402881004129-intron-Distal4.641543.85055HepG2XPO5
chr178090266080902755-intron-Distal3.298636.31916HepG2SUGP2
chr178097117880971259-intron-Distal6.1752513.21421HepG2FAM120A
chr178091147380911570-intron-Distal5.6182110.67163K562EXOSC5
chr178091706080917099-intron-Distal6.6875425.97267K562AGGF1
chr178100898781009075-intron-Distal5.0943313.29071HepG2RBFOX2
chr178096246880962509-intron-Distal4.773145.60609HepG2CSTF2T
chr178097597980976038-intron-Distal4.096463.27946HepG2HNRNPM
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for B3GNTL1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for B3GNTL1 is not available on ENCORE database.

  • 68 RBPs can affect the levels of B3GNTL1.  








The Knockdown/knockout RNA-Seq assay for B3GNTL1 is not available on ENCORE database.





68 RBPs can affect the gene expression of B3GNTL1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
B3GNTL1ENSG00000175711.4325.77490438.02680-0.427102.261401.40510HepG2ABCF1
B3GNTL1ENSG00000175711.4247.19020353.88370-0.517703.578402.90300HepG2ACO1
B3GNTL1ENSG00000175711.4466.34350342.469100.445301.957301.50110HepG2AKAP1
B3GNTL1ENSG00000175711.4307.24080194.621200.658602.733001.83920HepG2BCLAF1
B3GNTL1ENSG00000175711.4275.21660185.168300.571602.769202.17070HepG2BOP1
B3GNTL1ENSG00000175711.4263.74350353.75020-0.423602.760102.09480HepG2CKAP4
B3GNTL1ENSG00000175711.4341.58980169.993701.006707.494506.40750HepG2CPSF6
B3GNTL1ENSG00000175711.4455.64950361.521000.333701.993201.43070HepG2CELF1
B3GNTL1ENSG00000175711.4598.72860388.731200.623007.648106.50420HepG2DAZAP1
B3GNTL1ENSG00000175711.4190.19070263.55900-0.470702.035701.44330HepG2DDX21
B3GNTL1ENSG00000175711.4447.92210281.871800.668103.891303.16870HepG2DDX6
B3GNTL1ENSG00000175711.4219.72900338.55610-0.623703.924603.14560HepG2DKC1
B3GNTL1ENSG00000175711.4537.21460270.873400.987809.006207.97410HepG2EIF2S1
B3GNTL1ENSG00000175711.4427.04930291.500100.550802.405701.76310HepG2EIF4B
B3GNTL1ENSG00000175711.4513.76270367.370400.483803.061902.20680HepG2EIF4G2
B3GNTL1ENSG00000175711.4254.90800379.32760-0.573503.699202.44830HepG2ESF1
B3GNTL1ENSG00000175711.4367.94160211.841400.796403.400802.53370HepG2FUBP3
B3GNTL1ENSG00000175711.4418.45150280.188800.578603.244602.52690HepG2G3BP1
B3GNTL1ENSG00000175711.4495.85240289.187500.777804.715003.27470HepG2GRSF1
B3GNTL1ENSG00000175711.4478.82180337.823300.503104.441103.22360HepG2HDGF
B3GNTL1ENSG00000175711.4164.64500232.03490-0.495001.889201.34390HepG2HNRNPA1
B3GNTL1ENSG00000175711.4377.15040258.114500.547003.014302.29430HepG2HNRNPC
B3GNTL1ENSG00000175711.4422.23890283.890700.572603.339202.57490HepG2HNRNPK
B3GNTL1ENSG00000175711.4558.45930354.106600.657207.990706.90030HepG2HNRNPL
B3GNTL1ENSG00000175711.4385.07960284.779300.435201.973601.39480HepG2IGF2BP2
B3GNTL1ENSG00000175711.4348.14020261.907700.410502.637501.92010HepG2ILF2
B3GNTL1ENSG00000175711.4511.52390286.488900.836205.526904.06070HepG2KHSRP
B3GNTL1ENSG00000175711.4514.57190385.464700.416702.916102.13330HepG2NOL12
B3GNTL1ENSG00000175711.4460.68120285.542800.690003.221602.25900HepG2PABPC1
B3GNTL1ENSG00000175711.4431.05580276.912900.638303.948303.09650HepG2PABPC4
B3GNTL1ENSG00000175711.4376.03560260.151600.531403.903203.20830HepG2PCBP1
B3GNTL1ENSG00000175711.4358.74830264.725600.438402.529402.00220HepG2PTBP1
B3GNTL1ENSG00000175711.4238.31870367.95770-0.626604.044003.33810HepG2PUF60
B3GNTL1ENSG00000175711.4633.82330390.601000.6983010.065609.08220HepG2PUM1
B3GNTL1ENSG00000175711.4535.14290390.317200.455203.227802.50300HepG2PUM2
B3GNTL1ENSG00000175711.4511.71890286.679700.835808.667907.65660HepG2QKI
B3GNTL1ENSG00000175711.4743.08740260.189501.5139027.9777025.99860HepG2RBM25
B3GNTL1ENSG00000175711.4276.89500167.986300.720902.952802.14340HepG2RRP9
B3GNTL1ENSG00000175711.4439.77450295.466000.573703.009601.64620HepG2SART3
B3GNTL1ENSG00000175711.4147.22120424.96400-1.5294012.7882011.27440HepG2SF3A3
B3GNTL1ENSG00000175711.4377.34900249.102000.599103.071902.05840HepG2SMNDC1
B3GNTL1ENSG00000175711.4309.29500202.528900.610802.390301.66580HepG2SNRNP70
B3GNTL1ENSG00000175711.4828.84610521.384000.6687010.104209.30960HepG2SRFBP1
B3GNTL1ENSG00000175711.4455.09570195.857501.216309.648407.68330HepG2SRSF3
B3GNTL1ENSG00000175711.4414.54760234.429200.822307.682206.61780HepG2SRSF7
B3GNTL1ENSG00000175711.4336.82990234.040200.525203.718703.09980HepG2SRSF9
B3GNTL1ENSG00000175711.4289.13100452.68050-0.646806.163305.45360HepG2SSB
B3GNTL1ENSG00000175711.4381.95360251.378600.603402.976402.39640HepG2TRIM56
B3GNTL1ENSG00000175711.4211.14660378.23550-0.841004.701603.89440HepG2U2AF1
B3GNTL1ENSG00000175711.4340.54050129.500601.3948012.0399010.47170HepG2UCHL5
B3GNTL1ENSG00000175711.4272.16570363.85960-0.418902.314501.75570HepG2UTP3
B3GNTL1ENSG00000175711.4291.07880375.92320-0.369002.165501.65260K562AGGF1
B3GNTL1ENSG00000175711.4225.12600428.87720-0.929807.469506.58190K562AQR
B3GNTL1ENSG00000175711.4271.86790420.32880-0.628605.432504.56390K562DDX47
B3GNTL1ENSG00000175711.4155.33350236.99750-0.609502.850201.92280K562EFTUD2
B3GNTL1ENSG00000175711.4157.46480245.84870-0.642703.643102.96340K562FXR1
B3GNTL1ENSG00000175711.465.18400140.10780-1.103904.484703.54000K562G3BP2
B3GNTL1ENSG00000175711.4130.16980231.69250-0.831802.585302.00550K562HNRNPC
B3GNTL1ENSG00000175711.4288.89280415.15100-0.523103.423502.49420K562KIF1C
B3GNTL1ENSG00000175711.4393.32090536.48470-0.447803.130701.92680K562MSI2
B3GNTL1ENSG00000175711.4210.30970325.97600-0.632302.876301.97420K562NAA15
B3GNTL1ENSG00000175711.4197.32620312.82140-0.664803.437002.50890K562PCBP3
B3GNTL1ENSG00000175711.4163.11980239.94430-0.556802.850602.03700K562POLR2G
B3GNTL1ENSG00000175711.498.85050230.62720-1.222207.600206.35260K562PRPF8
B3GNTL1ENSG00000175711.4378.35860549.16300-0.537503.827102.87230K562PUF60
B3GNTL1ENSG00000175711.4258.79810387.99670-0.584203.248902.66820K562PUS1
B3GNTL1ENSG00000175711.4230.75450377.97870-0.711905.303004.50610K562RBM15
B3GNTL1ENSG00000175711.4111.31540234.88380-1.077306.169204.94310K562RPS19
B3GNTL1ENSG00000175711.4136.86400199.86320-0.546302.221701.57940K562SRSF1
B3GNTL1ENSG00000175711.493.79180140.21760-0.580102.029601.34260K562U2AF2
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for B3GNTL1 is not available on ENCORE database.





5 RBPs can affect the splicing of B3GNTL1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEB3GNTL1ENSG00000175711.4chr17-809182348091836280915234809153708091893280919208-0.147000.000650.04317excludedHepG2RBM22
SEB3GNTL1ENSG00000175711.4chr17-809235268092362280918932809190578096299080963086-0.102000.004530.05769excludedK562PUS1
SEB3GNTL1ENSG00000175711.4chr17-809235268092362280918932809190578096299080963086-0.126000.000300.01371excludedK562UTP18
A3SSB3GNTL1ENSG00000175711.4chr17-8091457080914752809145708091464580915056809151250.200000.000270.00896longerHepG2U2AF2
A3SSB3GNTL1ENSG00000175711.4chr17-8091457080914752809145708091464580915056809151250.291000.000120.00632longerHepG2U2AF1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for B3GNTL1 is not avaliable on ENCORE database.