ARFIP1

General Information

Gene Name       : ARFIP1
Gene ID             : ENSG00000164144.15
Essential Gene : No

Functions

Localization

Domains (AlphaFold: ARFIP1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878ARFIP1ENSG00000164144.1510.669.3910.03ENCSR000AEF
HepG2ARFIP1ENSG00000164144.157.2914.6310.96ENCSR985KAT
K562ARFIP1ENSG00000164144.1510.1812.4511.31ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for ARFIP1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • ARFIP1 RNA is bound by 13 proteins.  







eCLIP assay for ARFIP1 is not avaliable on ENCORE database.





13 proteins are bound to ARFIP1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr4153831891153831936+3'-UTR4.212064.34615K562LIN28B
chr4153831850153831932+3'-UTR4.368444.01886HepG2LIN28B
chr4153701243153701352+5'-UTR,intron-Distal,intron-Proximal4.181664.10386HepG2NCBP2
chr4153802112153802316+CDS,intron-Distal,intron-Proximal3.998595.79432HepG2BCLAF1
chr4153737619153737755+intron-Distal3.978703.71677HepG2HNRNPL
chr4153776220153776357+intron-Distal3.890939.72085HepG2RBFOX2
chr4153775999153776066+intron-Distal4.080563.14375HepG2RBFOX2
chr4153775952153776023+intron-Distal4.368964.66737HepG2MATR3
chr4153764542153764597+intron-Distal3.905603.29248HepG2SUGP2
chr4153705529153705616+intron-Distal3.636805.50064HepG2PTBP1
chr4153705528153705598+intron-Distal3.691558.08605K562PTBP1
chr4153759620153759664+intron-Distal3.258273.43875K562EXOSC5
chr4153802576153802752+intron-Distal3.851463.49011K562KHSRP
chr4153717970153718013+intron-Distal3.629213.02060K562LIN28B
chr4153715803153715920+intron-Distal4.900336.73684K562KHSRP
chr4153731548153731700+intron-Distal3.906323.47315HepG2CSTF2
chr4153802553153802686+intron-Distal4.908865.95026HepG2U2AF2
chr4153776421153776594+intron-Distal3.212085.88570HepG2RBFOX2
chr4153776232153776300+intron-Distal3.233483.59523HepG2SUGP2
chr4153746080153746185+intron-Distal3.434293.15317HepG2HNRNPL
chr4153715653153715748+intron-Distal3.691348.67954K562KHSRP
chr4153717819153717913+intron-Distal3.726063.06015K562MATR3
chr4153761061153761138+intron-Distal4.007023.01445K562EXOSC5
chr4153761029153761193+intron-Distal4.091896.71533HepG2MATR3
chr4153719499153719609+intron-Distal3.327804.70224K562KHSRP
chr4153775730153775844+intron-Distal3.998923.34098HepG2HNRNPM
chr4153761048153761117+intron-Distal4.313893.86368HepG2HNRNPM
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for ARFIP1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for ARFIP1 is not available on ENCORE database.

  • 65 RBPs can affect the levels of ARFIP1.  








The Knockdown/knockout RNA-Seq assay for ARFIP1 is not available on ENCORE database.





65 RBPs can affect the gene expression of ARFIP1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
ARFIP1ENSG00000164144.10596.04340434.313200.456602.470201.89020HepG2ACO1
ARFIP1ENSG00000164144.101118.50360761.847200.553904.028903.40400HepG2AKAP1
ARFIP1ENSG00000164144.10203.15880301.60170-0.570002.650601.63430HepG2AKAP8
ARFIP1ENSG00000164144.10534.64430362.840400.559102.522101.79330HepG2CNOT7
ARFIP1ENSG00000164144.10222.90330364.99010-0.711404.922804.04460HepG2DDX21
ARFIP1ENSG00000164144.10407.42420626.85870-0.621604.069903.33300HepG2DDX6
ARFIP1ENSG00000164144.10255.52780393.07580-0.621305.783504.89130HepG2DNAJC2
ARFIP1ENSG00000164144.10476.05000336.137700.502002.524901.47150HepG2AGO1
ARFIP1ENSG00000164144.10398.70420602.68910-0.596104.115403.40110HepG2EIF2S1
ARFIP1ENSG00000164144.10130.97060305.58420-1.2223010.825808.72420HepG2EIF2S2
ARFIP1ENSG00000164144.10465.80310643.25990-0.465703.314902.42790HepG2EIF4G2
ARFIP1ENSG00000164144.10549.91560424.486700.373402.347801.57950HepG2EWSR1
ARFIP1ENSG00000164144.10329.13170451.72460-0.456803.339702.55740HepG2HNRNPF
ARFIP1ENSG00000164144.10471.29810631.09110-0.421202.533601.86340HepG2HNRNPK
ARFIP1ENSG00000164144.10513.21920620.09850-0.272902.164101.55770HepG2HNRNPL
ARFIP1ENSG00000164144.10257.03390442.44260-0.783508.426807.41040HepG2HNRNPU
ARFIP1ENSG00000164144.10484.77730633.66910-0.386402.062301.47000HepG2IGF2BP2
ARFIP1ENSG00000164144.10297.47770451.94340-0.603406.420505.34940HepG2ILF2
ARFIP1ENSG00000164144.10465.77580637.32460-0.452402.185601.30700HepG2KHSRP
ARFIP1ENSG00000164144.10525.55680672.17000-0.355001.845401.30460HepG2MAGOH
ARFIP1ENSG00000164144.10500.47580691.88670-0.467202.809702.17190HepG2NCBP2
ARFIP1ENSG00000164144.10200.97020312.54660-0.637102.617801.88920HepG2NSUN2
ARFIP1ENSG00000164144.10411.13220616.23660-0.583904.088903.22240HepG2PABPC4
ARFIP1ENSG00000164144.10248.44540394.62650-0.667605.680804.65750HepG2PPIL4
ARFIP1ENSG00000164144.10348.80190590.93250-0.760608.159807.17470HepG2QKI
ARFIP1ENSG00000164144.10353.70140486.59690-0.460202.770902.08760HepG2RPLP0
ARFIP1ENSG00000164144.10574.26370389.150300.561303.820502.91460HepG2RRP9
ARFIP1ENSG00000164144.10277.89560394.02480-0.503703.814703.07910HepG2SAFB2
ARFIP1ENSG00000164144.10601.54290447.049300.428102.228101.62180HepG2SF3A3
ARFIP1ENSG00000164144.10481.51290617.74090-0.359403.243002.49370HepG2SLBP
ARFIP1ENSG00000164144.101183.42920794.646200.574509.775108.99000HepG2SRFBP1
ARFIP1ENSG00000164144.10837.22410592.945900.497605.710505.09200HepG2SRSF1
ARFIP1ENSG00000164144.10348.38080443.79960-0.349202.205001.57600HepG2SRSF7
ARFIP1ENSG00000164144.10419.50410532.96420-0.345402.162401.65540HepG2TAF15
ARFIP1ENSG00000164144.10190.45600343.64940-0.851504.574803.67390HepG2TARDBP
ARFIP1ENSG00000164144.10286.36210429.97970-0.586404.598203.98790HepG2TIAL1
ARFIP1ENSG00000164144.10241.61140433.75470-0.844209.597008.64440HepG2TRIM56
ARFIP1ENSG00000164144.10214.18270299.81300-0.485201.988701.34560HepG2UCHL5
ARFIP1ENSG00000164144.10298.66400464.81760-0.638102.455901.51320HepG2UPF2
ARFIP1ENSG00000164144.10326.29270499.55010-0.614503.258402.47560HepG2XRN2
ARFIP1ENSG00000164144.10314.55950459.63520-0.547203.998402.77160K562AKAP8
ARFIP1ENSG00000164144.10991.93210763.465700.377602.838602.24370K562AQR
ARFIP1ENSG00000164144.10198.02400312.75210-0.659304.236102.90700K562DDX3X
ARFIP1ENSG00000164144.10273.11300529.00660-0.9538012.5382011.17180K562EIF2S2
ARFIP1ENSG00000164144.10209.39000294.28080-0.491002.795601.63320K562EIF4B
ARFIP1ENSG00000164144.10625.14080802.44130-0.360202.728201.79620K562EIF4G2
ARFIP1ENSG00000164144.10445.37160339.821800.390102.578901.99050K562FXR1
ARFIP1ENSG00000164144.10470.46350704.93730-0.583404.943203.93520K562GRSF1
ARFIP1ENSG00000164144.10264.92470516.37950-0.9628012.1836010.32920K562HNRNPU
ARFIP1ENSG00000164144.10330.16490442.20360-0.421502.517701.50680K562MAK16
ARFIP1ENSG00000164144.10264.51090387.92580-0.552504.036703.07480K562MTPAP
ARFIP1ENSG00000164144.10254.98900362.75600-0.508602.175601.41450K562NAA15
ARFIP1ENSG00000164144.10278.00060431.00380-0.632606.002904.96300K562NSUN2
ARFIP1ENSG00000164144.10209.75690349.77820-0.737702.567801.62360K562PABPN1
ARFIP1ENSG00000164144.10326.95520248.893400.393502.046901.35840K562POLR2G
ARFIP1ENSG00000164144.10245.99330415.91690-0.757702.734501.31480K562PPP1R8
ARFIP1ENSG00000164144.10529.32450308.547200.778606.247405.11970K562PRPF8
ARFIP1ENSG00000164144.10275.82390431.77930-0.646504.476503.80930K562PUS1
ARFIP1ENSG00000164144.10307.95180420.62480-0.449803.008102.39470K562RBM15
ARFIP1ENSG00000164144.10202.65620304.10490-0.585503.325001.85340K562RBM25
ARFIP1ENSG00000164144.10217.58840325.58240-0.581403.162001.34530K562RECQL
ARFIP1ENSG00000164144.10497.80770314.296800.663404.328903.30240K562RPS19
ARFIP1ENSG00000164144.10222.71910367.34730-0.721902.438801.31700K562SNRNP200
ARFIP1ENSG00000164144.10310.70450477.52460-0.620002.671101.64320K562SRSF5
ARFIP1ENSG00000164144.10326.23740484.34370-0.570103.764302.46020K562TRA2A
ARFIP1ENSG00000164144.10302.85880457.00380-0.593605.336204.37330K562UPF1
ARFIP1ENSG00000164144.10354.24940494.96480-0.482603.532401.63420K562UPF2
ARFIP1ENSG00000164144.10273.06400437.68270-0.680602.862801.54220K562UTP18
ARFIP1ENSG00000164144.10252.16390391.04160-0.633004.548703.41330K562WDR3
ARFIP1ENSG00000164144.10632.10450904.50350-0.517005.078903.32740K562WRN
ARFIP1ENSG00000164144.10596.50730860.10030-0.528004.940803.73410K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for ARFIP1 is not available on ENCORE database.





9 RBPs can affect the splicing of ARFIP1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEARFIP1ENSG00000164144.10chr4+153791904153792000153784757153784866153793603153793716-0.272000.000580.03965excludedHepG2RBM22
SEARFIP1ENSG00000164144.10chr4+153791904153792000153784757153784866153793603153793716-0.390000.000030.00647excludedHepG2HNRNPM
SEARFIP1ENSG00000164144.10chr4+153791904153792000153784757153784866153793603153793716-0.472000.000020.00400excludedHepG2QKI
SEARFIP1ENSG00000164144.10chr4+1537919041537920001537847571537848661537936031537937160.339000.000300.07997includedHepG2BCLAF1
SEARFIP1ENSG00000164144.10chr4+153791904153792000153784757153784866153793603153793716-0.239000.001240.05007excludedHepG2MATR3
SEARFIP1ENSG00000164144.10chr4+1537919041537920001537847571537848661537936031537937160.302000.000350.03887includedHepG2SUPV3L1
SEARFIP1ENSG00000164144.10chr4+1537919041537920001537847571537848661537936031537937160.478000.000010.00092includedK562HNRNPU
SEARFIP1ENSG00000164144.10chr4+153791904153792000153784757153784866153793603153793716-0.330000.000010.00094excludedK562PTBP1
A3SSARFIP1ENSG00000164144.10chr4+1537847291537848661537847571537848661537507451537508780.092000.000680.00491longerK562AQR
A3SSARFIP1ENSG00000164144.10chr4+1538092561538094591538092841538094591538038741538040320.054000.020480.09731longerK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for ARFIP1 is not avaliable on ENCORE database.