AC024560.3

General Information

Gene Name       : AC024560.3
Gene ID             : ENSG00000273308.1
Essential Gene : No

Functions

Localization

Domains (AlphaFold: AC024560.3)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878AC024560.3ENSG00000273308.10.000.000.00ENCSR000AEF
HepG2AC024560.3ENSG00000273308.10.350.230.29ENCSR985KAT
K562AC024560.3ENSG00000273308.10.000.000.00ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for AC024560.3 is not avaliable on ENCORE database.



Proteins bound to RNA
  • AC024560.3 RNA is bound by 20 proteins.  







eCLIP assay for AC024560.3 is not avaliable on ENCORE database.





20 proteins are bound to AC024560.3 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr3197340151197340199-intron-Distal,intron-Proximal4.0328219.69430HepG2U2AF2
chr3197346607197346733-intron-Distal,intron-Proximal3.6069224.53330HepG2BCLAF1
chr3197333231197333264-intron-Distal3.226343.34034HepG2HLTF
chr3197340171197340252-intron-Distal,intron-Proximal3.047007.33255HepG2SF3A3
chr3197345971197346050-intron-Distal3.636066.52138HepG2QKI
chr3197330381197330401-intron-Distal4.9334213.85754HepG2AQR
chr3197334364197334439-intron-Distal3.178725.84909HepG2RBM22
chr3197346733197346758-intron-Distal4.229627.09561HepG2BCLAF1
chr3197341419197341523-intron-Distal3.048573.39327K562U2AF2
chr3197342528197342556-intron-Distal,intron-Proximal3.343376.09950HepG2BCLAF1
chr3197348576197348657-intron-Distal3.420637.90527K562ZNF622
chr3197348529197348579-intron-Distal,intron-Proximal5.123636.44303K562AQR
chr3197348574197348654-intron-Distal,intron-Proximal4.739258.51520K562DDX24
chr3197330299197330400-intron-Distal5.616077.28294K562AQR
chr3197339447197339532-intron-Distal3.6910011.26770K562KHSRP
chr3197348633197348690-intron-Distal3.0900612.39807HepG2BCLAF1
chr3197346609197346622-intron-Distal,intron-Proximal3.297965.73981HepG2GRWD1
chr3197354594197354639-intron-Distal4.549858.69247K562AQR
chr3197335739197335890-intron-Distal3.251083.23179HepG2RBFOX2
chr3197334356197334417-intron-Distal4.063203.82000HepG2GRWD1
chr3197331310197331394-intron-Distal3.025254.51544HepG2HNRNPL
chr3197354170197354279-intron-Distal4.027573.84268HepG2GRSF1
chr3197345979197346085-intron-Distal5.808277.47823K562QKI
chr3197348574197348627-intron-Distal,intron-Proximal3.883583.92633HepG2UCHL5
chr3197346622197346670-intron-Distal3.8620513.92979HepG2GRWD1
chr3197334349197334379-intron-Distal3.475093.34034HepG2HLTF
chr3197348573197348655-intron-Distal,intron-Proximal3.478176.92192K562UCHL5
chr3197346610197346720-intron-Distal,intron-Proximal3.507828.43531K562ZNF622
chr3197330357197330381-intron-Distal5.4205720.36945HepG2AQR
chr3197334314197334460-intron-Distal4.848837.06467HepG2SRSF9
chr3197341451197341528-intron-Distal3.6695814.26353HepG2U2AF2
chr3197348573197348633-intron-Distal,intron-Proximal4.4515022.95877HepG2BCLAF1
chr3197348574197348630-intron-Distal,intron-Proximal4.3855611.08250HepG2GRWD1
chr3197340169197340249-intron-Distal,intron-Proximal5.093246.66303HepG2SF3B4
chr3197330310197330357-intron-Distal5.6623311.60096HepG2AQR
chr3197340114197340200-intron-Distal,intron-Proximal4.395426.14774K562U2AF2
chr3197340388197340420-intron-Distal3.878113.41051HepG2SRSF1
chr3197354639197354652-intron-Distal4.416117.92018K562AQR
chr3197346608197346727-intron-Distal,intron-Proximal3.1650416.70890HepG2PPIG
chr3197348527197348577-intron-Distal,intron-Proximal3.7826510.17713HepG2PRPF8
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for AC024560.3 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for AC024560.3 is not available on ENCORE database.

  • 79 RBPs can affect the levels of AC024560.3.  








The Knockdown/knockout RNA-Seq assay for AC024560.3 is not available on ENCORE database.





79 RBPs can affect the gene expression of AC024560.3 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
AC024560.3ENSG00000214135.4254.44470521.45460-1.0352015.8776014.67580HepG2ACO1
AC024560.3ENSG00000214135.4144.47380422.20750-1.5471014.3099013.19800HepG2AKAP1
AC024560.3ENSG00000214135.4380.77830523.94310-0.460503.905003.00630HepG2AKAP8L
AC024560.3ENSG00000214135.4250.17510349.35230-0.481702.242101.53130HepG2ASCC1
AC024560.3ENSG00000214135.4182.16990331.81370-0.865106.011305.16920HepG2BOP1
AC024560.3ENSG00000214135.4281.65530388.73710-0.464902.635701.88240HepG2CALR
AC024560.3ENSG00000214135.4417.47280521.38770-0.320702.359701.73750HepG2CKAP4
AC024560.3ENSG00000214135.4344.15940557.69040-0.696403.690802.80150HepG2CNOT7
AC024560.3ENSG00000214135.4375.12990566.02420-0.593506.187105.29880HepG2CELF1
AC024560.3ENSG00000214135.4167.79650404.46650-1.2693011.5152010.31830HepG2DDX3X
AC024560.3ENSG00000214135.4439.52670596.71950-0.441102.893401.57230HepG2DDX47
AC024560.3ENSG00000214135.4234.13540392.31980-0.744706.609205.55790HepG2DNAJC21
AC024560.3ENSG00000214135.4633.41520334.009100.923208.793507.77530HepG2EIF2S1
AC024560.3ENSG00000214135.4203.30690312.37390-0.619603.172302.21150HepG2EIF3D
AC024560.3ENSG00000214135.4531.26660369.146100.525103.124402.44600HepG2EIF4A3
AC024560.3ENSG00000214135.4259.32950367.21310-0.501802.856501.69520HepG2FASTKD2
AC024560.3ENSG00000214135.4335.66780596.80830-0.830206.440105.31230HepG2FIP1L1
AC024560.3ENSG00000214135.4429.56160243.996200.815906.961905.75010HepG2FUBP3
AC024560.3ENSG00000214135.4522.94450366.707400.511903.132702.18530HepG2G3BP2
AC024560.3ENSG00000214135.4272.78350383.15010-0.490202.481501.52190HepG2GNB2L1
AC024560.3ENSG00000214135.4591.35470440.563100.424602.604001.92920HepG2HNRNPC
AC024560.3ENSG00000214135.4620.45320349.722500.827007.756106.63230HepG2HNRNPK
AC024560.3ENSG00000214135.4464.26250322.651400.524903.697802.87100HepG2IGF2BP1
AC024560.3ENSG00000214135.4341.50600447.04550-0.388502.975402.21680HepG2ILF2
AC024560.3ENSG00000214135.4254.96380375.35670-0.558003.294002.05620HepG2LARP7
AC024560.3ENSG00000214135.4554.54850372.501600.574003.738102.97570HepG2MAGOH
AC024560.3ENSG00000214135.4219.37390374.59970-0.772004.466903.68300HepG2MATR3
AC024560.3ENSG00000214135.4170.69640326.93250-0.937604.159402.88230HepG2METAP2
AC024560.3ENSG00000214135.4465.33620603.59180-0.375302.947402.16040HepG2NOL12
AC024560.3ENSG00000214135.4448.49990292.202100.618003.802902.92880HepG2NSUN2
AC024560.3ENSG00000214135.4300.60090509.66810-0.761703.929402.85890HepG2PABPC1
AC024560.3ENSG00000214135.4302.65470433.19990-0.517404.058203.05500HepG2PARN
AC024560.3ENSG00000214135.4332.40600576.15450-0.793508.157607.20650HepG2PUF60
AC024560.3ENSG00000214135.4387.70820611.58210-0.657608.994308.05510HepG2PUM1
AC024560.3ENSG00000214135.4489.80040611.15480-0.319302.165701.56940HepG2PUM2
AC024560.3ENSG00000214135.4477.94480671.16440-0.489804.390303.33990HepG2RBM15
AC024560.3ENSG00000214135.4221.44550600.04180-1.4381024.6321023.39430HepG2RBM22
AC024560.3ENSG00000214135.4664.51610337.045100.9793012.2850010.92580HepG2RBM25
AC024560.3ENSG00000214135.4537.78770355.380700.597605.449004.62060HepG2RECQL
AC024560.3ENSG00000214135.4140.09710303.94790-1.117409.284408.23630HepG2RPS19
AC024560.3ENSG00000214135.4311.97220417.43750-0.420102.022801.33160HepG2RPS2
AC024560.3ENSG00000214135.4215.80490305.06800-0.499402.175701.33790HepG2SERBP1
AC024560.3ENSG00000214135.4528.72470700.38820-0.405601.884501.32550HepG2SF3A3
AC024560.3ENSG00000214135.4270.22510454.51220-0.750208.437507.41080HepG2SMN1
AC024560.3ENSG00000214135.4289.45830436.74500-0.593403.197202.16060HepG2SMNDC1
AC024560.3ENSG00000214135.4465.01700677.71030-0.543406.247205.57770HepG2SRFBP1
AC024560.3ENSG00000214135.4358.29530568.83100-0.666906.503105.59780HepG2SRSF5
AC024560.3ENSG00000214135.4448.41070321.924200.478003.561502.78610HepG2SRSF7
AC024560.3ENSG00000214135.4722.45530588.387100.296002.327001.84750HepG2SSB
AC024560.3ENSG00000214135.4341.46770486.91670-0.511902.734201.64020HepG2STIP1
AC024560.3ENSG00000214135.4435.16820646.94980-0.572107.089506.17420HepG2SUCLG1
AC024560.3ENSG00000214135.4464.38850683.92940-0.558503.302401.84530HepG2SUGP2
AC024560.3ENSG00000214135.4275.77960403.01880-0.547303.888702.78580HepG2SUPT6H
AC024560.3ENSG00000214135.4592.84770334.891300.823909.722808.77430HepG2TAF15
AC024560.3ENSG00000214135.4421.69160307.770500.454202.750401.91650HepG2TIA1
AC024560.3ENSG00000214135.4279.16980425.26190-0.607204.657004.04290HepG2TIAL1
AC024560.3ENSG00000214135.4270.91760429.06050-0.663306.390405.59670HepG2TRIM56
AC024560.3ENSG00000214135.4400.71680595.71020-0.572003.448902.51240HepG2UBE2L3
AC024560.3ENSG00000214135.4297.70720190.872200.641203.689102.81340HepG2UCHL5
AC024560.3ENSG00000214135.4414.32880295.893000.485602.264701.36370HepG2UPF2
AC024560.3ENSG00000214135.4483.43280599.68250-0.310902.237901.68720HepG2UTP3
AC024560.3ENSG00000214135.4323.71420501.42060-0.631303.683402.41480HepG2XPO5
AC024560.3ENSG00000214135.4308.48610471.48080-0.612003.164402.02830HepG2XRCC6
AC024560.3ENSG00000214135.4481.87030683.13150-0.503506.145405.41380HepG2ZNF622
AC024560.3ENSG00000214135.4516.46680709.46230-0.458104.374403.68990K562AGGF1
AC024560.3ENSG00000214135.4475.17800738.22550-0.635605.976004.99130K562AKAP8L
AC024560.3ENSG00000214135.4590.54850774.57200-0.391303.389702.36910K562ATP5C1
AC024560.3ENSG00000214135.4422.65110753.07190-0.8333013.4200012.09540K562DDX47
AC024560.3ENSG00000214135.4644.29210794.39750-0.302102.357001.55780K562DKC1
AC024560.3ENSG00000214135.4423.32040597.95150-0.498304.613203.71400K562EIF2S2
AC024560.3ENSG00000214135.4135.92840248.52080-0.870503.324402.21320K562EIF3A
AC024560.3ENSG00000214135.4238.73560322.80150-0.435202.285001.55750K562EIF3G
AC024560.3ENSG00000214135.4388.35370536.48470-0.466203.004102.11780K562FIP1L1
AC024560.3ENSG00000214135.4666.13720378.876700.814008.890907.87190K562HNRNPC
AC024560.3ENSG00000214135.4500.65880727.33820-0.538804.230003.25270K562HSPD1
AC024560.3ENSG00000214135.4521.02130783.44960-0.588505.508704.25610K562KIF1C
AC024560.3ENSG00000214135.4551.57200749.94770-0.443203.085001.93380K562MAK16
AC024560.3ENSG00000214135.4415.34540615.17560-0.566703.120602.17520K562NAA15
AC024560.3ENSG00000214135.4296.23290636.92840-1.104405.989304.36300K562PABPN1
AC024560.3ENSG00000214135.4318.24730435.82910-0.453602.080001.48900K562PTBP1
AC024560.3ENSG00000214135.4667.239201079.15150-0.693607.151405.83490K562PUF60
AC024560.3ENSG00000214135.4503.87320732.13310-0.539004.464403.79770K562PUS1
AC024560.3ENSG00000214135.4445.21520713.34020-0.680107.782406.81820K562RBM15
AC024560.3ENSG00000214135.4168.39830349.27460-1.052507.452506.10020K562RPS19
AC024560.3ENSG00000214135.4214.60250350.59420-0.708103.484201.97970K562RRP9
AC024560.3ENSG00000214135.4557.82140361.220400.626804.411702.96580K562U2AF1
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for AC024560.3 is not available on ENCORE database.





16 RBPs can affect the splicing of AC024560.3 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEAC024560.3ENSG00000214135.4chr3-197349057197349201197348574197348739197350090197350253-0.353000.000000.00000excludedK562SRSF1
SEAC024560.3ENSG00000214135.4chr3-197349057197349201197348574197348739197350090197350253-0.371000.000040.00494excludedHepG2RBM22
SEAC024560.3ENSG00000214135.4chr3-197349057197349201197348574197348739197350090197350253-0.255000.000030.00103excludedHepG2U2AF1
SEAC024560.3ENSG00000214135.4chr3-197349057197349201197348574197348739197350090197350253-0.272000.000110.00435excludedHepG2HNRNPK
SEAC024560.3ENSG00000214135.4chr3-197351342197351591197350982197351068197354650197354713-0.303000.000590.00903excludedHepG2U2AF2
SEAC024560.3ENSG00000214135.4chr3-197349057197349201197348574197348739197350090197350253-0.417000.000000.00000excludedHepG2U2AF2
SEAC024560.3ENSG00000214135.4chr3-1973513421973515911973509821973510681973546501973547130.437000.000000.00000includedK562AQR
SEAC024560.3ENSG00000214135.4chr3-1973513421973515911973509821973510681973546501973547130.181000.000290.01459includedK562FXR1
SEAC024560.3ENSG00000214135.4chr3-197349057197349201197348574197348739197350090197350253-0.251000.000150.02058excludedHepG2SRSF7
SEAC024560.3ENSG00000214135.4chr3-197349057197349201197348574197348739197350090197350253-0.140000.003520.04744excludedK562PUS1
SEAC024560.3ENSG00000214135.4chr3-1973490571973492011973485741973487391973500901973502530.199000.000840.05784includedHepG2HNRNPL
SEAC024560.3ENSG00000214135.4chr3-197349057197349201197348574197348739197350090197350253-0.591000.000000.00000excludedHepG2SRSF1
SEAC024560.3ENSG00000214135.4chr3-1973513421973515911973509821973510681973546501973547130.222000.000850.02692includedHepG2SF3A3
SEAC024560.3ENSG00000214135.4chr3-1973490571973492011973485741973487391973500901973502530.204000.000450.07488includedK562FXR2
SEAC024560.3ENSG00000214135.4chr3-197349057197349201197348574197348739197350090197350253-0.172000.000330.05503excludedK562SRSF7
SEAC024560.3ENSG00000214135.4chr3-1973513421973515911973509821973510681973546501973547130.234000.000000.00004includedK562HNRNPU
SEAC024560.3ENSG00000214135.4chr3-197349057197349201197348574197348739197350090197350253-0.193000.000110.00469excludedK562RBM15
SEAC024560.3ENSG00000214135.4chr3-197349057197349201197348574197348739197350090197350253-0.277000.002100.06866excludedHepG2HNRNPC
SEAC024560.3ENSG00000214135.4chr3-1973490571973492011973485741973487391973500901973502530.193000.000020.04682includedK562CPEB4
SEAC024560.3ENSG00000214135.4chr3-1973513421973515911973509821973510681973546501973547130.260000.001720.03009includedK562HNRNPC
SEAC024560.3ENSG00000214135.4chr3-197349057197349201197348574197348739197350090197350253-0.283000.000000.00001excludedK562HNRNPC
A3SSAC024560.3ENSG00000214135.4chr3-1973485741973487741973485741973487391973500901973502720.080000.020120.09586longerK562AQR
A3SSAC024560.3ENSG00000214135.4chr3-1973400951973402701973400951973401891973424341973425310.254000.000020.00020longerK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for AC024560.3 is not avaliable on ENCORE database.