ZCCHC6

General Information

Gene Name       : ZCCHC6
Gene ID             :
Essential Gene : No

Functions

Localization

Domains (AlphaFold: ZCCHC6)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for ZCCHC6 is not avaliable on ENCORE database.



Proteins bound to RNA
  • ZCCHC6 RNA is bound by 12 proteins.  







eCLIP assay for ZCCHC6 is not avaliable on ENCORE database.





12 proteins are bound to ZCCHC6 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr98896121488961309-5'-UTR,CDS,intron-Distal4.970998.99884HepG2GRWD1
chr98896121388961272-5'-UTR,CDS,intron-Distal,intron-Proximal4.002914.13344K562GRWD1
chr98895381988953897-5'-UTR,CDS,intron-Distal,intron-Proximal3.812538.98256HepG2U2AF2
chr98895989188959948-5'-UTR,CDS,intron-Distal,intron-Proximal5.241308.40988HepG2BCLAF1
chr98896917388969187-5'-UTR,intron-Distal4.652285.32906HepG2AQR
chr98896123288961355-5'-UTR,CDS,intron-Distal3.247468.53142K562UCHL5
chr98895233788952385-5'-UTR,CDS,intron-Distal4.406388.41475HepG2BCLAF1
chr98896127788961333-5'-UTR,CDS,intron-Distal4.437467.97334HepG2BCLAF1
chr98896127988961397-5'-UTR,CDS,intron-Distal,intron-Proximal3.006526.46638HepG2PPIG
chr98893859488938628-5'-UTR,CDS,intron-Distal3.313523.12941K562UCHL5
chr98894025188940333-5'-UTR,CDS,intron-Distal3.550898.99805HepG2BCLAF1
chr98896916488969189-5'-UTR,intron-Distal3.892344.49024K562AQR
chr98896121388961324-5'-UTR,CDS,intron-Distal,intron-Proximal4.450733.68892HepG2ZNF800
chr98895495188955012-5'-UTR,CDS,intron-Distal3.8262610.35753HepG2BCLAF1
chr98894037588940415-5'-UTR,CDS,intron-Distal3.881365.06180HepG2BCLAF1
chr98896801288968169-5'-UTR,CDS,intron-Distal,intron-Proximal3.568528.66562HepG2AQR
chr98894329788943332-5'-UTR,CDS,intron-Distal3.930564.93978HepG2BCLAF1
chr98895999988960062-5'-UTR,CDS,intron-Distal3.351884.62864K562ZNF622
chr98896790588967953-5'-UTR,CDS,intron-Distal4.067345.65086HepG2BCLAF1
chr98895803588958066-5'-UTR,CDS,intron-Distal,intron-Proximal4.461593.89826HepG2BCLAF1
chr98896795388968024-5'-UTR,CDS,intron-Distal4.431557.49468HepG2BCLAF1
chr98895234188952397-5'-UTR,CDS,intron-Distal4.790756.46917K562ZNF622
chr98893790488937963-CDS,intron-Distal3.957784.93978HepG2BCLAF1
chr98893832088938422-CDS,intron-Distal3.043693.06626K562GRWD1
chr98893735688937388-CDS,intron-Distal3.351883.61259K562ZNF622
chr98891978988919813-CDS,intron-Distal3.704304.76554HepG2BCLAF1
chr98893805488938179-CDS,intron-Distal3.048664.89603K562TRA2A
chr98893792588937978-CDS,intron-Distal3.960494.49887K562ZNF622
chr98893794488938054-CDS,intron-Distal4.389575.10317K562TRA2A
chr98893824888938311-CDS,intron-Distal3.289335.39086K562UCHL5
chr98893796588938075-CDS,intron-Distal3.226403.34822K562RBM15
chr98893791188938014-CDS,intron-Distal5.170817.31591K562UCHL5
chr98890362888903677-CDS,intron-Distal3.066614.05586HepG2U2AF2
chr98893831188938384-CDS,intron-Distal3.789337.45042K562UCHL5
chr98893736888937386-CDS,intron-Distal4.081813.36385K562UCHL5
chr98893833188938385-CDS,intron-Distal3.927918.51432HepG2BCLAF1
chr98892442888924490-CDS,intron-Distal4.570325.86049K562LIN28B
chr98892442988924486-CDS,intron-Distal3.988603.43975HepG2LIN28B
chr98896914288969164-intron-Distal4.853345.17615K562AQR
chr98896914688969173-intron-Distal4.700764.97857HepG2AQR
chr98895477888954840-intron-Distal3.182273.35377HepG2QKI
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for ZCCHC6 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for ZCCHC6 is not available on ENCORE database.

  • 73 RBPs can affect the levels of ZCCHC6.  








The Knockdown/knockout RNA-Seq assay for ZCCHC6 is not available on ENCORE database.





73 RBPs can affect the gene expression of ZCCHC6 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
ZCCHC6ENSG00000083223.13450.41130596.46530-0.405202.431101.49450HepG2ADAR
ZCCHC6ENSG00000083223.131027.027001328.12060-0.370902.965602.34880HepG2BOP1
ZCCHC6ENSG00000083223.13741.58430560.141900.404702.440301.70980HepG2CIRBP
ZCCHC6ENSG00000083223.131001.68720747.240600.422705.808504.90850HepG2CKAP4
ZCCHC6ENSG00000083223.13572.38480744.28100-0.378903.947003.08660HepG2DAZAP1
ZCCHC6ENSG00000083223.13857.14680614.332100.480404.011203.20850HepG2DDX21
ZCCHC6ENSG00000083223.13902.41070682.614000.402602.544001.94250HepG2DDX3X
ZCCHC6ENSG00000083223.13484.50590600.61530-0.309902.111501.48850HepG2DNAJC21
ZCCHC6ENSG00000083223.13806.97380625.200000.368102.253501.41990HepG2EEF2
ZCCHC6ENSG00000083223.13845.16310606.475400.478701.963301.37700HepG2EIF4B
ZCCHC6ENSG00000083223.131390.480001033.637100.427806.293305.44850HepG2ETF1
ZCCHC6ENSG00000083223.13573.89490730.34780-0.347802.377801.60450HepG2EWSR1
ZCCHC6ENSG00000083223.13651.38500433.267100.588205.012403.96770HepG2FUBP3
ZCCHC6ENSG00000083223.13503.56170674.47100-0.421602.789302.09340HepG2HNRNPC
ZCCHC6ENSG00000083223.13559.09930683.22480-0.289302.443601.48390HepG2KIF1C
ZCCHC6ENSG00000083223.13807.21630628.621100.360702.092901.51950HepG2MAGOH
ZCCHC6ENSG00000083223.131044.93130779.795200.422103.918602.96030HepG2MSI2
ZCCHC6ENSG00000083223.131077.79020690.049900.643203.514702.50570HepG2PABPC1
ZCCHC6ENSG00000083223.13722.18140575.737000.326902.694502.09390HepG2PCBP1
ZCCHC6ENSG00000083223.13717.61270433.394000.727406.296805.13090HepG2PRPF8
ZCCHC6ENSG00000083223.13733.46590585.834800.324102.434201.91530HepG2PTBP1
ZCCHC6ENSG00000083223.13843.36400634.471600.410503.575302.87820HepG2QKI
ZCCHC6ENSG00000083223.131433.88620863.928400.7308013.6820012.70410HepG2RBM22
ZCCHC6ENSG00000083223.13927.31070651.977200.508106.041705.29380HepG2NELFE
ZCCHC6ENSG00000083223.13773.93780607.229500.349903.015102.37540HepG2RECQL
ZCCHC6ENSG00000083223.13630.34470428.719700.556003.526402.65280HepG2RRP9
ZCCHC6ENSG00000083223.13469.49670596.67690-0.345802.825902.17620HepG2SAFB2
ZCCHC6ENSG00000083223.13901.01440609.928000.562807.251506.36710HepG2SF3B4
ZCCHC6ENSG00000083223.131781.52410975.773700.8684026.6405025.49980HepG2SRFBP1
ZCCHC6ENSG00000083223.13812.89250636.633500.352503.141402.64580HepG2SRSF1
ZCCHC6ENSG00000083223.13842.16880695.587000.275802.215001.64780HepG2SRSF5
ZCCHC6ENSG00000083223.13862.65440517.935800.7359012.7200011.69020HepG2SRSF9
ZCCHC6ENSG00000083223.131533.64050847.199700.8561023.3866022.21730HepG2SSB
ZCCHC6ENSG00000083223.131029.41270791.081500.379804.657803.88840HepG2SUCLG1
ZCCHC6ENSG00000083223.13737.58580559.242800.399202.123101.52030HepG2SUPV3L1
ZCCHC6ENSG00000083223.131013.89830572.232900.8251014.4357013.30280HepG2TAF15
ZCCHC6ENSG00000083223.13657.89030525.802100.323202.146801.40900HepG2TIA1
ZCCHC6ENSG00000083223.131623.56690824.109800.9782011.105509.82470HepG2U2AF1
ZCCHC6ENSG00000083223.131023.54930728.504000.490503.210802.30920HepG2UBE2L3
ZCCHC6ENSG00000083223.13673.95280964.56590-0.517206.860305.98860HepG2UTP3
ZCCHC6ENSG00000083223.13839.36890694.361100.273502.386501.75730HepG2ZC3H8
ZCCHC6ENSG00000083223.131332.693501098.789100.278303.578502.97810HepG2ZNF622
ZCCHC6ENSG00000083223.13845.527701308.11010-0.6296010.975509.93990K562AGGF1
ZCCHC6ENSG00000083223.13978.888501361.15820-0.475604.552303.70730K562AKAP8L
ZCCHC6ENSG00000083223.131188.872501567.97210-0.399304.295802.69450K562APOBEC3C
ZCCHC6ENSG00000083223.131100.261701563.22960-0.506706.324404.51390K562CCDC124
ZCCHC6ENSG00000083223.131278.323601552.06840-0.279902.842901.71780K562CPEB4
ZCCHC6ENSG00000083223.131134.949801605.95110-0.500808.676207.60230K562DDX47
ZCCHC6ENSG00000083223.13545.07200714.18020-0.389803.306701.84480K562DDX6
ZCCHC6ENSG00000083223.13299.60680464.82200-0.633602.771101.76670K562EIF3A
ZCCHC6ENSG00000083223.13467.93670653.26910-0.481404.271303.29280K562EIF3G
ZCCHC6ENSG00000083223.131326.795801777.01590-0.421506.219304.82740K562EIF4G2
ZCCHC6ENSG00000083223.13495.22380642.40830-0.375402.907601.57970K562EWSR1
ZCCHC6ENSG00000083223.13783.827201079.59100-0.461904.105603.05900K562FIP1L1
ZCCHC6ENSG00000083223.13749.981201120.50300-0.579206.522805.35570K562GRSF1
ZCCHC6ENSG00000083223.13485.60170746.66950-0.620703.623302.95180K562HNRNPC
ZCCHC6ENSG00000083223.131115.598301451.35890-0.379603.579302.35670K562HNRNPL
ZCCHC6ENSG00000083223.13592.29780887.92620-0.584104.590103.36470K562HNRNPM
ZCCHC6ENSG00000083223.131063.283801463.77040-0.461204.441203.43780K562HSPD1
ZCCHC6ENSG00000083223.131029.225501382.76440-0.426003.619302.33550K562MAK16
ZCCHC6ENSG00000083223.131300.048401618.20170-0.315802.719801.82090K562MBNL1
ZCCHC6ENSG00000083223.13825.866101117.59050-0.436404.011402.94370K562METAP2
ZCCHC6ENSG00000083223.13997.770301234.92080-0.307602.504501.73480K562MTPAP
ZCCHC6ENSG00000083223.13408.72120581.05670-0.507603.168701.76040K562NONO
ZCCHC6ENSG00000083223.13863.720001381.80140-0.677902.603501.65030K562PABPN1
ZCCHC6ENSG00000083223.131007.78840804.845000.324302.285601.40150K562PCBP2
ZCCHC6ENSG00000083223.13864.234801225.47310-0.503803.186902.29750K562PPIG
ZCCHC6ENSG00000083223.131645.192902062.45860-0.326103.614902.38610K562PUM1
ZCCHC6ENSG00000083223.131738.312502020.58680-0.217102.194201.33740K562PUM2
ZCCHC6ENSG00000083223.131066.360301349.82140-0.340102.446601.92880K562PUS1
ZCCHC6ENSG00000083223.131084.134801315.25890-0.278802.309101.75910K562RBM15
ZCCHC6ENSG00000083223.13441.25750584.49370-0.405602.007401.31720K562RPS19
ZCCHC6ENSG00000083223.13513.78470861.49610-0.745709.310208.02340K562SRSF1
ZCCHC6ENSG00000083223.13721.51390911.92710-0.337902.376101.41060K562SRSF4
ZCCHC6ENSG00000083223.13639.83200813.56840-0.346602.334501.38280K562SRSF5
ZCCHC6ENSG00000083223.13641.15130841.06700-0.391603.143102.26230K562TIA1
ZCCHC6ENSG00000083223.13427.57000643.90040-0.590704.187203.01430K562TIAL1
ZCCHC6ENSG00000083223.131047.208201294.53210-0.305903.694402.72710K562WDR43
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for ZCCHC6 is not available on ENCORE database.





14 RBPs can affect the splicing of ZCCHC6 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEZCCHC6ENSG00000083223.13chr9-889392768893943988938542889388758894024888940429-0.110000.004550.07025excludedHepG2U2AF1
SEZCCHC6ENSG00000083223.13chr9-8891665488916743889161908891651688918000889181160.127000.001030.02761includedHepG2HNRNPK
SEZCCHC6ENSG00000083223.13chr9-8891665488916743889161908891651688918000889181160.061000.000000.00131includedHepG2DDX59
SEZCCHC6ENSG00000083223.13chr9-889559168895596888954950889550208895798988958078-0.123000.000900.01120excludedK562AQR
SEZCCHC6ENSG00000083223.13chr9-8894128588941406889402488894042988943254889434070.340000.003040.06075includedHepG2SRSF1
SEZCCHC6ENSG00000083223.13chr9-8891368188913745889026498890365988916190889165160.338000.000100.01192includedHepG2IGF2BP3
SEZCCHC6ENSG00000083223.13chr9-8894128588941406889402488894042988943254889434070.420000.000220.02159includedHepG2TIAL1
SEZCCHC6ENSG00000083223.13chr9-8894128588941406889402488894042988943254889434070.570000.000500.05809includedHepG2RBFOX2
SEZCCHC6ENSG00000083223.13chr9-889338728893397388932133889321918893449888934559-0.298000.000590.01821excludedK562AGGF1
SEZCCHC6ENSG00000083223.13chr9-8891368188913745889026498890365988916190889165160.311000.000040.04017includedK562AARS
SEZCCHC6ENSG00000083223.13chr9-8891368188913745889026498890365988916190889165160.413000.000260.04924includedK562EIF3G
SEZCCHC6ENSG00000083223.13chr9-8891368188913745889026498890365988916190889165160.329000.000010.00364includedHepG2KHSRP
SEZCCHC6ENSG00000083223.13chr9-8891665488916743889161908891651688918000889181160.169000.000330.05019includedHepG2KHSRP
SEZCCHC6ENSG00000083223.13chr9-8891368188913745889026498890365988916190889165160.355000.001750.03050includedK562HNRNPC
SEZCCHC6ENSG00000083223.13chr9-8893927688939439889385428893887588940248889404290.601000.000010.00029includedK562HNRNPC
A3SSZCCHC6ENSG00000083223.13chr9-8892437788924562889243778892449188924842889249840.054000.017220.08396longerK562AQR
A3SSZCCHC6ENSG00000083223.13chr9-8892484288924984889248428892493288925620889257240.146000.000000.00001longerK562AQR
A3SSZCCHC6ENSG00000083223.13chr9-8893723988937449889372398893739088937787889388750.092000.016280.08019longerK562AQR
A3SSZCCHC6ENSG00000083223.13chr9-8892334388923554889233438892352188924126889242220.212000.000000.00003longerK562AQR
A3SSZCCHC6ENSG00000083223.13chr9-8895989188960122889598918896006988960583889607000.055000.013900.07007longerK562AQR
MXEZCCHC6ENSG00000083223.13chr9-8892412688924204889243778892449188923343889235218892484288924932-0.316000.000290.002842includedHepG2U2AF2

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for ZCCHC6 is not avaliable on ENCORE database.