ZCCHC17

General Information

Gene Name       : ZCCHC17
Gene ID             : ENSG00000121766.15
Essential Gene : No

Functions

Localization

Domains (AlphaFold: ZCCHC17)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878ZCCHC17ENSG00000121766.1539.0034.1936.59ENCSR000AEF
HepG2ZCCHC17ENSG00000121766.1531.9445.7338.84ENCSR985KAT
K562ZCCHC17ENSG00000121766.1559.5465.0362.28ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for ZCCHC17 is not avaliable on ENCORE database.



Proteins bound to RNA
  • ZCCHC17 RNA is bound by 17 proteins.  







eCLIP assay for ZCCHC17 is not avaliable on ENCORE database.





17 proteins are bound to ZCCHC17 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr13183725531837328+3'-UTR3.991915.61622K562UPF1
chr13183704831837090+3'-UTR3.599063.05298K562GRWD1
chr13183705231837140+3'-UTR4.7142114.52844K562AGGF1
chr13183771331837748+3'-UTR5.0532819.13600K562PUM2
chr13183703031837103+3'-UTR,CDS4.9942915.11473K562UCHL5
chr13183693431837053+3'-UTR,CDS4.655334.83264K562TRA2A
chr13183769031837713+3'-UTR5.5905319.61215K562PUM2
chr13176986631769939+5'-UTR,intron-Proximal4.449685.05409HepG2NCBP2
chr13177003931770094+5'-UTR,intron-Distal,intron-Proximal4.376855.32062K562EFTUD2
chr13177003931770113+5'-UTR,intron-Distal,intron-Proximal5.524856.68817HepG2EFTUD2
chr13179200831792013+CDS4.099084.51688K562YBX3
chr13181004431810053+CDS3.343013.90824K562YBX3
chr13181948531819523+CDS,intron-Proximal3.7730410.32378K562YBX3
chr13183692931837037+CDS3.467964.56123K562CPSF6
chr13181952631819570+CDS4.073673.20743HepG2PPIG
chr13179198331792008+CDS4.621207.13593K562YBX3
chr13183691331837032+CDS3.771816.47322K562SRSF7
chr13181002131810036+CDS,intron-Proximal4.199264.72754K562YBX3
chr13181000931810059+CDS,intron-Proximal3.540373.95921HepG2U2AF2
chr13181188231811896+CDS,intron-Proximal3.488787.38488K562YBX3
chr13183691031836968+CDS3.296297.85158K562UCHL5
chr13181000931810060+CDS,intron-Proximal4.306954.08501K562U2AF2
chr13183696831837030+CDS3.530887.06500K562UCHL5
chr13181186431811882+CDS3.014123.46769K562YBX3
chr13181195731812062+intron-Distal,intron-Proximal4.110984.54401K562KHSRP
chr13180877431808933+intron-Distal4.3450510.69368K562KHSRP
chr13182843931828477+intron-Distal4.322323.16986HepG2QKI
chr13178436331784554+intron-Distal4.229787.56833K562ILF3
chr13180717731807281+intron-Distal3.922473.12825K562EIF4G2
chr13182841831828494+intron-Distal6.3887715.08232K562QKI
chr13180868831808774+intron-Distal3.090073.68839K562KHSRP
chr13178785631787976+intron-Distal3.971553.92684K562KHSRP
chr13179343931793505+intron-Distal3.259473.93901K562KHSRP
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for ZCCHC17 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for ZCCHC17 is not available on ENCORE database.

  • 58 RBPs can affect the levels of ZCCHC17.  








The Knockdown/knockout RNA-Seq assay for ZCCHC17 is not available on ENCORE database.





58 RBPs can affect the gene expression of ZCCHC17 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
ZCCHC17ENSG00000121766.10641.80630507.292500.339202.885902.26750HepG2ACO1
ZCCHC17ENSG00000121766.10955.66770785.191200.283402.610901.94170HepG2AUH
ZCCHC17ENSG00000121766.10327.52290507.23850-0.631105.963105.05470HepG2CKAP4
ZCCHC17ENSG00000121766.10365.18970248.920900.552902.118601.45510HepG2CNOT7
ZCCHC17ENSG00000121766.10606.63310805.94700-0.409902.683702.00510HepG2CPSF6
ZCCHC17ENSG00000121766.10381.47290485.35600-0.347502.257301.63530HepG2DKC1
ZCCHC17ENSG00000121766.10320.87440417.69570-0.380402.360201.70430HepG2DNAJC21
ZCCHC17ENSG00000121766.10310.82790495.68460-0.673304.468103.72460HepG2EIF2S1
ZCCHC17ENSG00000121766.10540.77710741.03650-0.454504.819403.76440HepG2EIF4G1
ZCCHC17ENSG00000121766.10210.98320307.91870-0.545402.776201.98890HepG2FUBP3
ZCCHC17ENSG00000121766.10658.50860913.66020-0.472503.077402.40670HepG2GPKOW
ZCCHC17ENSG00000121766.10385.37110484.35320-0.329802.343201.43860HepG2HDGF
ZCCHC17ENSG00000121766.10335.71750469.04260-0.482502.830502.13060HepG2HNRNPC
ZCCHC17ENSG00000121766.10517.62160836.43810-0.692408.631807.45470HepG2HNRNPF
ZCCHC17ENSG00000121766.10480.36970684.25950-0.510405.985205.02600HepG2HNRNPL
ZCCHC17ENSG00000121766.10513.27700871.91770-0.764507.594506.61020HepG2HNRNPLL
ZCCHC17ENSG00000121766.10373.03460465.94280-0.320802.033101.50370HepG2HNRNPU
ZCCHC17ENSG00000121766.10500.74280823.66390-0.718007.934306.76650HepG2IGF2BP1
ZCCHC17ENSG00000121766.10323.06700463.76390-0.521604.848003.50480HepG2KIF1C
ZCCHC17ENSG00000121766.10564.43610889.11910-0.655604.088802.90090HepG2MTPAP
ZCCHC17ENSG00000121766.10530.66560773.08070-0.542804.235303.31440HepG2NSUN2
ZCCHC17ENSG00000121766.10333.04550506.83220-0.605803.952003.09960HepG2PABPC4
ZCCHC17ENSG00000121766.10286.31870415.58680-0.537504.136203.25150HepG2PPIL4
ZCCHC17ENSG00000121766.10508.46150711.01220-0.483703.926403.23020HepG2PUF60
ZCCHC17ENSG00000121766.10540.78820754.21540-0.479904.390203.55520HepG2PUM2
ZCCHC17ENSG00000121766.10453.85460667.57990-0.556702.161501.39100HepG2RBM15
ZCCHC17ENSG00000121766.101090.97360753.470700.533907.175106.43250HepG2RBM22
ZCCHC17ENSG00000121766.10705.33310548.343800.363102.756602.21620HepG2NELFE
ZCCHC17ENSG00000121766.10661.76680900.88230-0.445003.223502.49480HepG2RPLP0
ZCCHC17ENSG00000121766.10140.90410479.61310-1.7672017.7248015.59450HepG2RPS10
ZCCHC17ENSG00000121766.10246.49370414.95280-0.751407.618006.62630HepG2SAFB2
ZCCHC17ENSG00000121766.10853.69680663.355600.363801.945201.37750HepG2SF3A3
ZCCHC17ENSG00000121766.10504.79590863.05890-0.773807.143206.05570HepG2SF3B1
ZCCHC17ENSG00000121766.10474.18740681.72740-0.523706.223705.23830HepG2SLBP
ZCCHC17ENSG00000121766.10497.06690851.02940-0.7758013.0524012.17890HepG2SRFBP1
ZCCHC17ENSG00000121766.10926.83470535.447000.7915013.1813012.31460HepG2SRSF1
ZCCHC17ENSG00000121766.10537.55520821.73440-0.612306.957705.93450HepG2SRSF7
ZCCHC17ENSG00000121766.10391.23700509.46150-0.380902.171701.33360HepG2SUPT6H
ZCCHC17ENSG00000121766.10347.03380481.23320-0.471703.593802.97030HepG2TAF15
ZCCHC17ENSG00000121766.10501.94610849.69980-0.759408.073206.92110HepG2TARDBP
ZCCHC17ENSG00000121766.10329.34290442.23800-0.425202.739501.90730HepG2TIA1
ZCCHC17ENSG00000121766.10307.66780456.79360-0.570205.418304.68010HepG2TRIM56
ZCCHC17ENSG00000121766.10207.66690735.22300-1.8239025.2391022.78490HepG2UBE2L3
ZCCHC17ENSG00000121766.10465.97860604.68230-0.375902.961001.88250HepG2UTP18
ZCCHC17ENSG00000121766.10441.34480567.97540-0.363902.819602.21800HepG2UTP3
ZCCHC17ENSG00000121766.101658.106602054.96250-0.309602.547701.97930K562AQR
ZCCHC17ENSG00000121766.101685.931002029.47400-0.267602.810601.69640K562CPEB4
ZCCHC17ENSG00000121766.101578.180101938.84450-0.296902.686801.91360K562CPSF6
ZCCHC17ENSG00000121766.101622.919302100.25390-0.372005.793804.90180K562DDX47
ZCCHC17ENSG00000121766.10682.77900975.68000-0.515002.576301.69850K562EFTUD2
ZCCHC17ENSG00000121766.101335.701701598.65550-0.259302.654901.94740K562EIF2S2
ZCCHC17ENSG00000121766.10674.956301044.91110-0.630503.303502.16650K562EIF3D
ZCCHC17ENSG00000121766.102047.579202462.01370-0.265902.973302.00170K562EIF4G2
ZCCHC17ENSG00000121766.101129.67440828.404500.447405.415104.60770K562FXR1
ZCCHC17ENSG00000121766.101453.451201851.15160-0.348903.135602.29320K562GPKOW
ZCCHC17ENSG00000121766.102377.146601588.701300.581305.790604.37640K562HNRNPM
ZCCHC17ENSG00000121766.101480.948701806.91690-0.287002.357801.55290K562METAP2
ZCCHC17ENSG00000121766.101494.522501712.96450-0.196802.502101.78850K562NSUN2
ZCCHC17ENSG00000121766.10849.067701100.13830-0.373702.264901.38440K562PCBP2
ZCCHC17ENSG00000121766.102280.020002799.56440-0.296203.540802.45620K562PUM2
ZCCHC17ENSG00000121766.10760.22570996.55940-0.390504.995902.88210K562RPS10
ZCCHC17ENSG00000121766.10662.59250855.35540-0.368402.654501.62910K562SRSF4
ZCCHC17ENSG00000121766.101422.155701125.547300.337403.259702.36900K562SYNCRIP
ZCCHC17ENSG00000121766.10959.763101191.82730-0.312402.070801.45250K562TARDBP
ZCCHC17ENSG00000121766.10945.015801149.63030-0.282802.104801.39810K562TIA1
ZCCHC17ENSG00000121766.102020.316003028.55480-0.584009.017606.66340K562UBE2L3
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for ZCCHC17 is not available on ENCORE database.





14 RBPs can affect the splicing of ZCCHC17 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEZCCHC17ENSG00000121766.10chr1+3179101331791083317828903178301131791955317920130.134000.000390.00976includedK562SRSF1
SEZCCHC17ENSG00000121766.10chr1+318216753182182131819486318195873183687831837783-0.060000.000520.01176excludedHepG2U2AF1
SEZCCHC17ENSG00000121766.10chr1+318100213181012231791955317920133181180331811895-0.063000.002100.05541excludedK562AKAP8L
SEZCCHC17ENSG00000121766.10chr1+317910133179108331782890317830113179195531792013-0.125000.001600.02099excludedHepG2U2AF2
SEZCCHC17ENSG00000121766.10chr1+318194863181958731811803318118953183687831837783-0.279000.000000.00005excludedHepG2U2AF2
SEZCCHC17ENSG00000121766.10chr1+3179101331791083317828903178301131791955317920130.095000.001490.09722includedK562SUPV3L1
SEZCCHC17ENSG00000121766.10chr1+317910133179108331782890317830113179195531792013-0.106000.000060.00327excludedHepG2SF3A3
SEZCCHC17ENSG00000121766.10chr1+318100213181012231791955317920133181180331811895-0.109000.000050.00333excludedK562UTP18
SEZCCHC17ENSG00000121766.10chr1+317828903178301131769878317699223179195531792013-0.095000.000430.01786excludedK562UTP18
SEZCCHC17ENSG00000121766.10chr1+317828903178301131769878317699223179195531792013-0.099000.000030.00109excludedK562U2AF2
SEZCCHC17ENSG00000121766.10chr1+3179101331791083317828903178301131791955317920130.168000.000080.00534includedK562SF3B1
SEZCCHC17ENSG00000121766.10chr1+317910133179108331769844317699223179195531792013-0.673000.000270.01693excludedK562HNRNPK
SEZCCHC17ENSG00000121766.10chr1+3179101331791083317828903178301131791955317920130.195000.000000.00249includedHepG2FUS
A3SSZCCHC17ENSG00000121766.10chr1+3181946531819665318194863181966531811773318118950.056000.000000.00000longerK562AQR
MXEZCCHC17ENSG00000121766.10chr1+31782890317830113179195531792013317698933176994331810021318101220.080000.000390.041311includedHepG2RBM22
MXEZCCHC17ENSG00000121766.10chr1+31791955317920133181180331811895317828903178301131819486318195870.104000.004370.032071includedK562AQR
MXEZCCHC17ENSG00000121766.10chr1+31782890317830113181002131810122317698543177006031811803318118950.058000.000430.004381includedK562AQR
MXEZCCHC17ENSG00000121766.10chr1+31791955317920133181180331811895317698823176992231819486318196650.067000.001760.076491includedK562UTP18
MXEZCCHC17ENSG00000121766.10chr1+31811803318118953181948631819587317919553179201331821675318218210.056000.000300.023971includedK562UTP18
MXEZCCHC17ENSG00000121766.10chr1+31782890317830113179195531792013317698543177006031810021318101220.051000.000730.032141includedK562HNRNPU
MXEZCCHC17ENSG00000121766.10chr1+3179195531792013318100213181012231782890317830113181180331811895-0.135000.000570.021232includedK562PPIL4
MXEZCCHC17ENSG00000121766.10chr1+31791955317920133181002131810122317698823176992231811803318118950.071000.001390.067611includedK562HNRNPK
MXEZCCHC17ENSG00000121766.10chr1+31791955317920133181002131810122317698823176992231811803318118950.135000.000440.022471includedK562AKAP8L

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for ZCCHC17 is not avaliable on ENCORE database.