WIPI2

General Information

Gene Name : WIPI2
Gene ID : ENSG00000157954.14
Essential Gene : Yes

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: WIPI2)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	WIPI2	ENSG00000157954.14	23.29	29.40	26.34	ENCSR000AEF
HepG2	WIPI2	ENSG00000157954.14	47.58	35.67	41.62	ENCSR985KAT
K562	WIPI2	ENSG00000157954.14	39.53	35.75	37.64	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for WIPI2 is not avaliable on ENCORE database.

Proteins bound to RNA

WIPI2 RNA is bound by 17 proteins.

CanvasJS.com

eCLIP assay for WIPI2 is not avaliable on ENCORE database.

17 proteins are bound to WIPI2 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr7	5270925	5270970	+	3'-UTR	5.85338	86.29805	K562	PUM2
chr7	5270970	5270996	+	3'-UTR	5.64235	60.15110	K562	PUM2
chr7	5262219	5262267	+	CDS,intron-Proximal	4.83931	30.79288	K562	U2AF2
chr7	5262230	5262265	+	CDS,intron-Proximal	5.68999	27.25959	K562	U2AF1
chr7	5262219	5262230	+	intron-Proximal	6.58487	25.25822	K562	U2AF1
chr7	5266784	5266853	+	CDS,intron-Proximal	4.57423	19.15895	K562	SF3B4
chr7	5262219	5262275	+	CDS,intron-Proximal	4.78425	17.19157	HepG2	U2AF2
chr7	5270701	5270749	+	3'-UTR	4.45503	15.08701	K562	PABPC4
chr7	5266755	5266784	+	intron-Proximal	4.30501	13.70474	K562	SF3B4
chr7	5265408	5265482	+	CDS,intron-Proximal	6.17392	12.80845	K562	SF3B4
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 34 entries

eCLIP assay for WIPI2 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for WIPI2 is not available on ENCORE database.
69 RBPs can affect the levels of WIPI2.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for WIPI2 is not available on ENCORE database.

69 RBPs can affect the gene expression of WIPI2 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
WIPI2	ENSG00000157954.10	3155.92280	1880.89010	0.74650	12.65120	11.52850	K562	AQR
WIPI2	ENSG00000157954.10	1167.02630	1740.25970	-0.57650	11.80470	10.97340	HepG2	SRSF1
WIPI2	ENSG00000157954.10	1050.46480	1573.79850	-0.58320	11.39830	10.30290	HepG2	PCBP1
WIPI2	ENSG00000157954.10	2600.60670	1860.28580	0.48320	10.76990	9.74370	K562	AGGF1
WIPI2	ENSG00000157954.10	2725.73010	1870.45180	0.54320	10.59810	9.46220	K562	RBM15
WIPI2	ENSG00000157954.10	3064.56500	1919.56110	0.67480	10.34640	9.34200	K562	PUS1
WIPI2	ENSG00000157954.10	1149.27240	1601.43210	-0.47860	8.31820	7.47480	HepG2	PTBP1
WIPI2	ENSG00000157954.10	1742.02380	1278.22630	0.44650	7.68140	6.61720	HepG2	SRSF7
WIPI2	ENSG00000157954.10	2070.08570	1401.48910	0.56260	7.32350	6.29140	HepG2	RPLP0
WIPI2	ENSG00000157954.10	1630.57400	1070.95480	0.60640	7.62040	6.14550	K562	FIP1L1
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 73 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for WIPI2 is not available on ENCORE database.

9 RBPs can affect the splicing of WIPI2 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	WIPI2	ENSG00000157954.10	chr7	+	5232748	5232802	5229818	5230124	5239206	5239289	-0.42900	0.00000	0.00000	excluded	K562	HNRNPU
A3SS	WIPI2	ENSG00000157954.10	chr7	+	5256681	5256818	5256720	5256818	5256193	5256290	0.08400	0.00000	0.00000	longer	K562	AQR
SE	WIPI2	ENSG00000157954.10	chr7	+	5232748	5232802	5229876	5230124	5239206	5239289	0.41900	0.00005	0.00473	included	HepG2	SFPQ
SE	WIPI2	ENSG00000157954.10	chr7	+	5232748	5232802	5229818	5230124	5239206	5239289	-0.23300	0.00015	0.01382	excluded	HepG2	AKAP1
SE	WIPI2	ENSG00000157954.10	chr7	+	5232748	5232976	5229889	5230124	5239206	5239289	-0.20900	0.00017	0.04647	excluded	HepG2	DKC1
A5SS	WIPI2	ENSG00000157954.10	chr7	+	5269238	5269396	5269238	5269336	5270465	5271101	0.20200	0.00028	0.05991	longer	K562	DROSHA
A5SS	WIPI2	ENSG00000157954.10	chr7	+	5265453	5265633	5265453	5265561	5266810	5266975	0.05600	0.00029	0.00650	longer	K562	AQR
SE	WIPI2	ENSG00000157954.10	chr7	+	5232748	5232802	5229818	5230124	5239206	5239289	0.23200	0.00079	0.03136	included	K562	PRPF8
SE	WIPI2	ENSG00000157954.10	chr7	+	5232748	5232802	5229818	5230124	5239206	5239289	-0.29500	0.00135	0.05422	excluded	HepG2	HNRNPU
SE	WIPI2	ENSG00000157954.10	chr7	+	5239206	5239289	5229903	5230124	5254165	5254335	-0.08000	0.00306	0.06463	excluded	K562	AGGF1

Showing 1 to 10 of 12 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

WIPI2

General Information

Functions

Localization

Domains (AlphaFold: WIPI2)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for WIPI2 is not avaliable on ENCORE database.

17 proteins are bound to WIPI2 RNA:

eCLIP assay for WIPI2 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for WIPI2 is not available on ENCORE database.

69 RBPs can affect the gene expression of WIPI2 :

The Knockdown/knockout RNA-Seq assay for WIPI2 is not available on ENCORE database.

9 RBPs can affect the splicing of WIPI2 :

The Knockdown/knockout RNA-Seq assay for WIPI2 is not avaliable on ENCORE database.