VTI1B

General Information

Gene Name       : VTI1B
Gene ID             : ENSG00000100568.10
Essential Gene : No

Functions

Localization

Domains (AlphaFold: VTI1B)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878VTI1BENSG00000100568.1034.6934.8534.77ENCSR000AEF
HepG2VTI1BENSG00000100568.1050.4754.9652.72ENCSR985KAT
K562VTI1BENSG00000100568.1033.4333.7033.56ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for VTI1B is not avaliable on ENCORE database.



Proteins bound to RNA
  • VTI1B RNA is bound by 18 proteins.  







eCLIP assay for VTI1B is not avaliable on ENCORE database.





18 proteins are bound to VTI1B RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr146811439568114481-3'-UTR,intron-Distal5.037527.62903HepG2QKI
chr146811791968118054-3'-UTR,CDS,intron-Distal,intron-Proximal3.051404.87202K562DDX6
chr146812657168126637-3'-UTR,CDS,intron-Distal,intron-Proximal4.460615.16762K562YBX3
chr146812919368129217-3'-UTR,CDS,intron-Distal,intron-Proximal3.170594.62864K562ZNF622
chr146811790568117952-3'-UTR,intron-Distal,intron-Proximal4.351006.14390K562PABPC4
chr146812651068126639-3'-UTR,CDS,intron-Distal,intron-Proximal3.540165.91739K562UCHL5
chr146812651168126580-3'-UTR,CDS,intron-Distal,intron-Proximal3.263853.94979HepG2BCLAF1
chr146811793868118060-3'-UTR,CDS,intron-Distal,intron-Proximal4.082667.48534K562LIN28B
chr146811790468118042-3'-UTR,intron-Distal,intron-Proximal4.452954.02861K562APOBEC3C
chr146811798668118031-3'-UTR,intron-Distal4.030254.88658HepG2SUB1
chr146811801368118051-3'-UTR,intron-Distal3.333423.21204K562PUM2
chr146811794768118061-3'-UTR,CDS,intron-Distal,intron-Proximal3.643543.54552HepG2LARP4
chr146811803168118065-3'-UTR,CDS,intron-Distal4.822735.25980HepG2SUB1
chr146812649268126640-3'-UTR,CDS,intron-Distal,intron-Proximal3.794788.14338K562ZNF800
chr146811794068118013-3'-UTR,intron-Distal,intron-Proximal3.608793.44691K562PUM2
chr146812658068126638-3'-UTR,CDS,intron-Distal,intron-Proximal3.593114.09885HepG2BCLAF1
chr146811792068118035-3'-UTR,intron-Distal,intron-Proximal3.157794.48738K562UPF1
chr146811415568114291-3'-UTR,intron-Distal3.329573.81193HepG2QKI
chr146811806868118173-3'-UTR,CDS,intron-Distal3.5493110.17500K562YBX3
chr146812644768126608-3'-UTR,CDS,intron-Distal,intron-Proximal3.595196.18332HepG2GRWD1
chr146812921768129252-3'-UTR,CDS,intron-Distal3.619916.74842K562ZNF622
chr146814120368141328-5'-UTR,CDS,intron-Distal,intron-Proximal3.313473.19733K562ZNF622
chr146814118268141247-5'-UTR,CDS,intron-Distal4.693563.99162HepG2DDX3X
chr146814124768141332-5'-UTR,intron-Distal,intron-Proximal4.5425011.11007HepG2DDX3X
chr146814124268141292-5'-UTR,intron-Distal4.571164.15208K562RBM15
chr146814121268141322-5'-UTR,intron-Distal3.868393.19625HepG2NCBP2
chr146814110368141340-5'-UTR,CDS,intron-Distal,intron-Proximal4.181326.73521K562DDX3X
chr146814109468141176-CDS,intron-Distal4.181619.80049K562YBX3
chr146814109068141182-CDS,intron-Distal3.094594.28697K562ZNF622
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for VTI1B is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for VTI1B is not available on ENCORE database.

  • 61 RBPs can affect the levels of VTI1B.  








The Knockdown/knockout RNA-Seq assay for VTI1B is not available on ENCORE database.





61 RBPs can affect the gene expression of VTI1B :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
VTI1BENSG00000100568.6610.143901006.32770-0.7219012.9251011.43080HepG2AKAP8L
VTI1BENSG00000100568.61369.080201081.701100.339802.255501.54280HepG2ASCC1
VTI1BENSG00000100568.61246.148801522.12940-0.288602.047301.52680HepG2BOP1
VTI1BENSG00000100568.61497.495201027.685100.543105.192504.15070HepG2CIRBP
VTI1BENSG00000100568.6327.35850893.21520-1.4481014.7966013.09280HepG2CNOT7
VTI1BENSG00000100568.6937.214101397.41250-0.576305.825104.86070HepG2CPSF6
VTI1BENSG00000100568.61105.849101395.39310-0.335504.477403.57120HepG2DAZAP1
VTI1BENSG00000100568.61148.82790926.363300.310403.815402.85490HepG2DDX19B
VTI1BENSG00000100568.6730.65130918.16640-0.329602.491501.62810HepG2DDX24
VTI1BENSG00000100568.6576.52000832.39340-0.529904.809403.53350HepG2DHX30
VTI1BENSG00000100568.6839.577901112.72320-0.406402.071301.47200HepG2EIF4B
VTI1BENSG00000100568.6802.188501376.75170-0.7793016.7203015.02520HepG2EIF4G1
VTI1BENSG00000100568.62342.717501761.295600.411407.435706.53020HepG2ETF1
VTI1BENSG00000100568.6510.79290654.17650-0.356902.255301.45360HepG2GEMIN5
VTI1BENSG00000100568.61191.44660983.420000.276703.316202.52000HepG2ILF2
VTI1BENSG00000100568.6769.61860915.61090-0.250602.366801.42330HepG2KIF1C
VTI1BENSG00000100568.6441.16930848.37820-0.943405.690204.08690HepG2NONO
VTI1BENSG00000100568.6569.98810816.28680-0.518102.341801.53750HepG2PABPC1
VTI1BENSG00000100568.6842.402301086.23880-0.366804.095203.38390HepG2PCBP1
VTI1BENSG00000100568.6603.82140855.13930-0.502003.291801.45610HepG2PHF6
VTI1BENSG00000100568.61438.758401169.399500.299003.380102.53300HepG2PRPF4
VTI1BENSG00000100568.6395.31700713.05240-0.851007.546606.28970HepG2PRPF8
VTI1BENSG00000100568.61279.095201105.333300.210501.867101.40060HepG2PTBP1
VTI1BENSG00000100568.61382.140301002.713200.462902.107101.48560HepG2RAVER1
VTI1BENSG00000100568.62070.542001472.120000.492008.085207.30800HepG2RBM22
VTI1BENSG00000100568.61393.915001145.731500.282803.126202.47660HepG2RECQL
VTI1BENSG00000100568.61841.631401265.948100.540703.910103.10270HepG2SF3A3
VTI1BENSG00000100568.6974.252201266.59900-0.378605.170404.25970HepG2SLBP
VTI1BENSG00000100568.61070.977301662.71030-0.6346014.3288013.42520HepG2SRFBP1
VTI1BENSG00000100568.61538.671701201.129500.357204.913904.33010HepG2SRSF1
VTI1BENSG00000100568.61243.738401610.01680-0.372402.201901.32050HepG2SRSF3
VTI1BENSG00000100568.61079.087101304.22180-0.273402.642402.02760HepG2SRSF5
VTI1BENSG00000100568.61073.209001363.78050-0.345704.411203.56430HepG2SRSF7
VTI1BENSG00000100568.6831.38200977.21100-0.233201.886701.41490HepG2SRSF9
VTI1BENSG00000100568.61619.038801079.712800.5844010.198209.22950HepG2TAF15
VTI1BENSG00000100568.61178.949701473.37870-0.321602.311001.64010HepG2TARDBP
VTI1BENSG00000100568.61550.449101254.958500.304902.022501.47640HepG2U2AF1
VTI1BENSG00000100568.61015.026701366.02630-0.428502.799501.95770HepG2UBE2L3
VTI1BENSG00000100568.6924.026401154.03520-0.320703.893203.11990HepG2ZC3H8
VTI1BENSG00000100568.61701.201501234.758200.462209.927409.05200HepG2ZNF622
VTI1BENSG00000100568.62195.970201527.765300.5233010.886409.85350K562AGGF1
VTI1BENSG00000100568.61043.355201865.49160-0.8383013.1674012.02310K562AQR
VTI1BENSG00000100568.62117.723401667.943500.344304.254503.09590K562ATP5C1
VTI1BENSG00000100568.61314.476902189.63400-0.736205.014003.53020K562CNOT7
VTI1BENSG00000100568.61042.060701447.73820-0.474405.419304.32940K562CPSF6
VTI1BENSG00000100568.62340.177801993.482400.231202.689402.04550K562DDX47
VTI1BENSG00000100568.6703.13360933.13590-0.408302.829101.90500K562EFTUD2
VTI1BENSG00000100568.6792.340701046.47920-0.401403.296702.40500K562EIF4A3
VTI1BENSG00000100568.61378.381202009.65990-0.544007.109505.88820K562GRSF1
VTI1BENSG00000100568.61173.696801392.30930-0.246402.172001.38120K562HNRNPU
VTI1BENSG00000100568.61922.822302519.14640-0.389703.413402.15820K562MSI2
VTI1BENSG00000100568.61166.190301467.10960-0.331204.260403.27530K562MTPAP
VTI1BENSG00000100568.6821.777301139.90880-0.472104.384603.14590K562PCBP2
VTI1BENSG00000100568.61260.955601583.43410-0.328502.157801.42280K562PCBP3
VTI1BENSG00000100568.6995.146901214.52760-0.287402.317901.58510K562POLR2G
VTI1BENSG00000100568.62251.094301576.647600.513705.908805.15220K562PUS1
VTI1BENSG00000100568.61970.582001536.116700.359204.330303.60490K562RBM15
VTI1BENSG00000100568.6860.052201193.54530-0.472804.454503.35650K562RBM22
VTI1BENSG00000100568.6891.334901163.46830-0.384402.784401.40350K562RBM34
VTI1BENSG00000100568.6929.464401256.01230-0.434403.592602.32550K562NELFE
VTI1BENSG00000100568.6927.121201220.23110-0.396303.634702.82990K562SRSF1
VTI1BENSG00000100568.6660.68760879.26690-0.412302.473601.51840K562SUPV3L1
VTI1BENSG00000100568.61521.122301218.230900.320203.059502.19300K562SYNCRIP
VTI1BENSG00000100568.6882.636801168.96230-0.405303.378902.14920K562TRA2A
VTI1BENSG00000100568.61440.647901018.605300.500003.980002.61900K562U2AF1
VTI1BENSG00000100568.61313.358301052.050700.320002.865202.04760K562U2AF2
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for VTI1B is not available on ENCORE database.





8 RBPs can affect the splicing of VTI1B :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEVTI1BENSG00000100568.6chr14-681297456812990768129193681292526814109168141327-0.074000.000540.03742excludedHepG2RBM22
SEVTI1BENSG00000100568.6chr14-681297456812990768129193681292526814109168141327-0.052000.000870.06933excludedK562XRCC6
SEVTI1BENSG00000100568.6chr14-6812974568129907681291936812925268141091681413270.058000.000040.00843includedK562FMR1
SEVTI1BENSG00000100568.6chr14-681291936812925268126447681266396814109168141548-0.079000.000000.00003excludedK562PUS1
SEVTI1BENSG00000100568.6chr14-6812974568129907681291936812925268141091681413270.135000.001280.06222includedHepG2PTBP1
SEVTI1BENSG00000100568.6chr14-6812015368120215681179776811819868123132681233060.107000.000030.00558includedK562HNRNPUL1
SEVTI1BENSG00000100568.6chr14-6812015368120215681179776811819868123132681233060.107000.000190.04085includedK562NPM1
SEVTI1BENSG00000100568.6chr14-6812974568129907681291936812925268141091681413270.171000.000000.00000includedK562HNRNPC

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for VTI1B is not avaliable on ENCORE database.