VTI1B

General Information

Gene Name : VTI1B
Gene ID : ENSG00000100568.10
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: VTI1B)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	VTI1B	ENSG00000100568.10	34.69	34.85	34.77	ENCSR000AEF
HepG2	VTI1B	ENSG00000100568.10	50.47	54.96	52.72	ENCSR985KAT
K562	VTI1B	ENSG00000100568.10	33.43	33.70	33.56	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for VTI1B is not avaliable on ENCORE database.

Proteins bound to RNA

VTI1B RNA is bound by 18 proteins.

CanvasJS.com

eCLIP assay for VTI1B is not avaliable on ENCORE database.

18 proteins are bound to VTI1B RNA:

Show entries

Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr14	68141247	68141332	-	5'-UTR,intron-Distal,intron-Proximal	4.54250	11.11007	HepG2	DDX3X
chr14	68118068	68118173	-	3'-UTR,CDS,intron-Distal	3.54931	10.17500	K562	YBX3
chr14	68141094	68141176	-	CDS,intron-Distal	4.18161	9.80049	K562	YBX3
chr14	68126492	68126640	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.79478	8.14338	K562	ZNF800
chr14	68114395	68114481	-	3'-UTR,intron-Distal	5.03752	7.62903	HepG2	QKI
chr14	68117938	68118060	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.08266	7.48534	K562	LIN28B
chr14	68129217	68129252	-	3'-UTR,CDS,intron-Distal	3.61991	6.74842	K562	ZNF622
chr14	68141103	68141340	-	5'-UTR,CDS,intron-Distal,intron-Proximal	4.18132	6.73521	K562	DDX3X
chr14	68126447	68126608	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.59519	6.18332	HepG2	GRWD1
chr14	68117905	68117952	-	3'-UTR,intron-Distal,intron-Proximal	4.35100	6.14390	K562	PABPC4
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 29 entries

eCLIP assay for VTI1B is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for VTI1B is not available on ENCORE database.
61 RBPs can affect the levels of VTI1B.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for VTI1B is not available on ENCORE database.

61 RBPs can affect the gene expression of VTI1B :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
VTI1B	ENSG00000100568.6	802.18850	1376.75170	-0.77930	16.72030	15.02520	HepG2	EIF4G1
VTI1B	ENSG00000100568.6	1070.97730	1662.71030	-0.63460	14.32880	13.42520	HepG2	SRFBP1
VTI1B	ENSG00000100568.6	327.35850	893.21520	-1.44810	14.79660	13.09280	HepG2	CNOT7
VTI1B	ENSG00000100568.6	1043.35520	1865.49160	-0.83830	13.16740	12.02310	K562	AQR
VTI1B	ENSG00000100568.6	610.14390	1006.32770	-0.72190	12.92510	11.43080	HepG2	AKAP8L
VTI1B	ENSG00000100568.6	2195.97020	1527.76530	0.52330	10.88640	9.85350	K562	AGGF1
VTI1B	ENSG00000100568.6	1619.03880	1079.71280	0.58440	10.19820	9.22950	HepG2	TAF15
VTI1B	ENSG00000100568.6	1701.20150	1234.75820	0.46220	9.92740	9.05200	HepG2	ZNF622
VTI1B	ENSG00000100568.6	2070.54200	1472.12000	0.49200	8.08520	7.30800	HepG2	RBM22
VTI1B	ENSG00000100568.6	2342.71750	1761.29560	0.41140	7.43570	6.53020	HepG2	ETF1
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 66 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for VTI1B is not available on ENCORE database.

8 RBPs can affect the splicing of VTI1B :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	VTI1B	ENSG00000100568.6	chr14	-	68129193	68129252	68126447	68126639	68141091	68141548	-0.07900	0.00000	0.00003	excluded	K562	PUS1
SE	VTI1B	ENSG00000100568.6	chr14	-	68129745	68129907	68129193	68129252	68141091	68141327	0.17100	0.00000	0.00000	included	K562	HNRNPC
SE	VTI1B	ENSG00000100568.6	chr14	-	68120153	68120215	68117977	68118198	68123132	68123306	0.10700	0.00003	0.00558	included	K562	HNRNPUL1
SE	VTI1B	ENSG00000100568.6	chr14	-	68129745	68129907	68129193	68129252	68141091	68141327	0.05800	0.00004	0.00843	included	K562	FMR1
SE	VTI1B	ENSG00000100568.6	chr14	-	68120153	68120215	68117977	68118198	68123132	68123306	0.10700	0.00019	0.04085	included	K562	NPM1
SE	VTI1B	ENSG00000100568.6	chr14	-	68129745	68129907	68129193	68129252	68141091	68141327	-0.07400	0.00054	0.03742	excluded	HepG2	RBM22
SE	VTI1B	ENSG00000100568.6	chr14	-	68129745	68129907	68129193	68129252	68141091	68141327	-0.05200	0.00087	0.06933	excluded	K562	XRCC6
SE	VTI1B	ENSG00000100568.6	chr14	-	68129745	68129907	68129193	68129252	68141091	68141327	0.13500	0.00128	0.06222	included	HepG2	PTBP1

Showing 1 to 8 of 8 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

VTI1B

General Information

Functions

Localization

Domains (AlphaFold: VTI1B)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for VTI1B is not avaliable on ENCORE database.

18 proteins are bound to VTI1B RNA:

eCLIP assay for VTI1B is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for VTI1B is not available on ENCORE database.

61 RBPs can affect the gene expression of VTI1B :

The Knockdown/knockout RNA-Seq assay for VTI1B is not available on ENCORE database.

8 RBPs can affect the splicing of VTI1B :

The Knockdown/knockout RNA-Seq assay for VTI1B is not avaliable on ENCORE database.