UBXN2B

General Information

Gene Name       : UBXN2B
Gene ID             : ENSG00000215114.8
Essential Gene : No

Functions

Localization

Domains (AlphaFold: UBXN2B)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878UBXN2BENSG00000215114.814.4812.5413.51ENCSR000AEF
HepG2UBXN2BENSG00000215114.86.1412.019.07ENCSR985KAT
K562UBXN2BENSG00000215114.89.6010.219.91ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for UBXN2B is not avaliable on ENCORE database.



Proteins bound to RNA
  • UBXN2B RNA is bound by 4 proteins.  







eCLIP assay for UBXN2B is not avaliable on ENCORE database.





4 proteins are bound to UBXN2B RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr85936247559362549+3'-UTR4.082983.63454HepG2SUGP2
chr85936309659363224+3'-UTR4.330008.08894HepG2QKI
chr85932400059324072+CDS,intron-Proximal4.1394410.01959HepG2PRPF8
chr85935556859355664+intron-Distal4.487833.70058HepG2XPO5
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for UBXN2B is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for UBXN2B is not available on ENCORE database.

  • 77 RBPs can affect the levels of UBXN2B.  








The Knockdown/knockout RNA-Seq assay for UBXN2B is not available on ENCORE database.





77 RBPs can affect the gene expression of UBXN2B :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
UBXN2BENSG00000215114.31371.07240837.112600.711707.604506.15040HepG2ABCF1
UBXN2BENSG00000215114.31096.83310821.684200.416603.914403.02020HepG2CALR
UBXN2BENSG00000215114.3769.73630537.272500.518603.804602.90760HepG2CIRBP
UBXN2BENSG00000215114.3658.74040459.395900.519902.415001.70360HepG2CNOT7
UBXN2BENSG00000215114.31081.39810871.639700.311002.011801.41530HepG2CPSF6
UBXN2BENSG00000215114.3421.46230609.14640-0.531404.945303.58590HepG2YBX3
UBXN2BENSG00000215114.3610.68840725.76970-0.249102.238601.56150HepG2DAZAP1
UBXN2BENSG00000215114.3907.89890451.495101.0077014.5434013.13270HepG2DDX21
UBXN2BENSG00000215114.3917.69110552.076400.7330011.8622010.66340HepG2DKC1
UBXN2BENSG00000215114.3413.25390598.11380-0.533405.098604.16970HepG2DNAJC21
UBXN2BENSG00000215114.3586.99320426.322000.461303.427802.24270HepG2EIF3G
UBXN2BENSG00000215114.3921.67960597.590300.625004.926004.07690HepG2EIF4A3
UBXN2BENSG00000215114.3303.51040581.71470-0.938606.658705.62340HepG2EIF4B
UBXN2BENSG00000215114.3513.15690685.83250-0.418502.899502.06750HepG2EIF4G2
UBXN2BENSG00000215114.3992.82330725.291000.452903.889902.61120HepG2ESF1
UBXN2BENSG00000215114.31466.03200824.139100.8309020.1631018.79290HepG2ETF1
UBXN2BENSG00000215114.3837.45610563.851400.570605.820004.60720HepG2EWSR1
UBXN2BENSG00000215114.3547.76850359.469000.607604.323803.19370HepG2GEMIN5
UBXN2BENSG00000215114.3554.00520988.09780-0.834808.477507.39860HepG2GPKOW
UBXN2BENSG00000215114.3521.86520667.23440-0.354503.074402.43810HepG2HNRNPU
UBXN2BENSG00000215114.3375.66800681.55600-0.8594015.3071013.74220HepG2ILF2
UBXN2BENSG00000215114.3381.07080527.47690-0.469004.482803.19840HepG2KIF1C
UBXN2BENSG00000215114.3824.04690602.957600.450602.975802.29690HepG2MAGOH
UBXN2BENSG00000215114.3625.31160836.09310-0.419102.803802.05020HepG2NSUN2
UBXN2BENSG00000215114.3317.55900480.56260-0.597703.231301.41620HepG2PHF6
UBXN2BENSG00000215114.3449.43750595.11790-0.405103.251702.45860HepG2PPIL4
UBXN2BENSG00000215114.3985.72510640.912800.621009.281707.98510HepG2PRPF4
UBXN2BENSG00000215114.3968.48610633.396700.612503.667202.27590HepG2PRPF6
UBXN2BENSG00000215114.3537.89480409.557600.393202.010301.31820HepG2PRPF8
UBXN2BENSG00000215114.3746.28780538.691400.470204.979504.29040HepG2PTBP1
UBXN2BENSG00000215114.3997.47540686.957600.538005.185404.40140HepG2PUF60
UBXN2BENSG00000215114.3884.18020729.204100.277902.512301.94150HepG2PUM1
UBXN2BENSG00000215114.3566.97830728.69120-0.362002.847702.16820HepG2PUM2
UBXN2BENSG00000215114.3841.61140581.507200.533302.411601.75040HepG2RAVER1
UBXN2BENSG00000215114.31042.78460688.825500.598108.088507.31100HepG2RBM22
UBXN2BENSG00000215114.3959.66740599.490400.6787010.313109.39040HepG2NELFE
UBXN2BENSG00000215114.3509.23760392.811300.374402.210901.65480HepG2RPS19
UBXN2BENSG00000215114.3449.82740594.19540-0.401603.553602.83960HepG2SAFB2
UBXN2BENSG00000215114.31770.36420911.788700.957209.860808.52820HepG2SF3A3
UBXN2BENSG00000215114.3499.27830658.62020-0.399604.036003.21210HepG2SLBP
UBXN2BENSG00000215114.31097.35690777.999000.496107.197006.49310HepG2SRFBP1
UBXN2BENSG00000215114.3800.27740585.373700.451004.855204.27310HepG2SRSF1
UBXN2BENSG00000215114.31259.50690675.480200.8988022.4313021.27830HepG2SSB
UBXN2BENSG00000215114.3240.82600354.24530-0.556802.585801.61900HepG2TFIP11
UBXN2BENSG00000215114.3456.72430654.14120-0.518305.805905.04280HepG2TRIM56
UBXN2BENSG00000215114.3511.67370671.07670-0.391302.841601.95650HepG2TUFM
UBXN2BENSG00000215114.31111.08850723.235500.619306.470205.52690HepG2U2AF1
UBXN2BENSG00000215114.31417.16050655.815201.111503.745302.58820HepG2U2AF2
UBXN2BENSG00000215114.3310.68840483.95950-0.639402.810401.79700HepG2UPF2
UBXN2BENSG00000215114.31331.00040632.503701.0733034.0301032.18480HepG2ZC3H8
UBXN2BENSG00000215114.31265.76010889.323600.509109.762608.89320HepG2ZNF622
UBXN2BENSG00000215114.3253.93460351.88660-0.470703.119701.50410K562AKAP1
UBXN2BENSG00000215114.3522.01500845.74340-0.696102.922402.25090K562AKAP8L
UBXN2BENSG00000215114.3638.59520798.52500-0.322402.098601.57410K562AQR
UBXN2BENSG00000215114.3481.92240652.95490-0.438202.724601.85790K562BOP1
UBXN2BENSG00000215114.3753.780701030.26890-0.450805.408103.82230K562CPEB4
UBXN2BENSG00000215114.3379.67940694.25080-0.8707010.764109.20290K562CPSF6
UBXN2BENSG00000215114.3998.725901258.76370-0.333802.485001.56160K562CELF1
UBXN2BENSG00000215114.3234.68750356.55030-0.603404.102002.79970K562DDX3X
UBXN2BENSG00000215114.3812.22490649.658500.322102.777302.05710K562EIF2S2
UBXN2BENSG00000215114.3209.66470335.46200-0.678105.313503.63910K562EIF4B
UBXN2BENSG00000215114.3668.38070892.69260-0.417503.245902.32400K562FIP1L1
UBXN2BENSG00000215114.3403.43060706.43710-0.808208.265006.74040K562FMR1
UBXN2BENSG00000215114.3443.09930598.79240-0.434402.611801.72690K562FTO
UBXN2BENSG00000215114.3557.22960387.391100.524404.653703.89640K562FXR1
UBXN2BENSG00000215114.3629.68790405.269200.635704.140103.23430K562G3BP2
UBXN2BENSG00000215114.3519.05590697.34160-0.426003.794302.46650K562GLRX3
UBXN2BENSG00000215114.3400.28240662.81660-0.727607.217205.93420K562GPKOW
UBXN2BENSG00000215114.3641.65800865.82410-0.432302.792902.03420K562GRSF1
UBXN2BENSG00000215114.3872.03590444.488000.9721014.1871012.91760K562HNRNPC
UBXN2BENSG00000215114.3312.45810507.58140-0.700007.056305.62760K562HNRNPU
UBXN2BENSG00000215114.3508.13770646.99230-0.348502.109501.34400K562METAP2
UBXN2BENSG00000215114.3536.72010733.15810-0.450004.594603.57380K562MTPAP
UBXN2BENSG00000215114.3453.32030814.63630-0.8456016.5567014.93900K562NSUN2
UBXN2BENSG00000215114.3582.28450437.268500.413102.613301.66300K562PCBP2
UBXN2BENSG00000215114.3698.075001013.30920-0.537604.599703.50430K562PPIG
UBXN2BENSG00000215114.3544.65820371.354700.552503.637602.77780K562PRPF8
UBXN2BENSG00000215114.31930.415901117.244400.7889012.2169010.49200K562PUF60
UBXN2BENSG00000215114.3574.13810839.01750-0.547302.360301.85040K562PUS1
UBXN2BENSG00000215114.3800.949301071.39410-0.419702.998401.68990K562STAU1
UBXN2BENSG00000215114.3758.71950490.203600.630106.965205.64660K562SYNCRIP
UBXN2BENSG00000215114.3759.778501044.54850-0.459203.103801.61830K562TRIP6
UBXN2BENSG00000215114.3943.73070406.112401.2164025.4798023.05870K562U2AF2
UBXN2BENSG00000215114.3710.11430863.77360-0.282602.494501.81040K562UPF1
UBXN2BENSG00000215114.3491.55610739.10790-0.588405.893904.59320K562WDR3
UBXN2BENSG00000215114.3696.43620899.64010-0.369402.219101.45730K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for UBXN2B is not available on ENCORE database.





8 RBPs can affect the splicing of UBXN2B :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEUBXN2BENSG00000215114.3chr8+5934741659347507593469535934706359352191593523290.549000.000010.00049includedK562SRSF1
SEUBXN2BENSG00000215114.3chr8+5932585759325930593239175932402859329408593295120.342000.000120.02972includedK562FTO
SEUBXN2BENSG00000215114.3chr8+593258575932593059323917593240285932940859329512-0.379000.000000.00000excludedHepG2U2AF2
SEUBXN2BENSG00000215114.3chr8+5934741659347507593469535934706359352191593523290.305000.000270.00402includedK562AQR
SEUBXN2BENSG00000215114.3chr8+5934741659347507593469535934706359352191593523290.254000.001450.02320includedK562PUS1
SEUBXN2BENSG00000215114.3chr8+593258575932593059323917593240285932940859329512-0.317000.000030.00350excludedHepG2SFPQ
SEUBXN2BENSG00000215114.3chr8+5934741659347507593469535934706359352191593523290.512000.002020.04443includedHepG2SRSF1
SEUBXN2BENSG00000215114.3chr8+5932585759325930593239175932402859329408593295120.372000.000030.00104includedK562HNRNPC
MXEUBXN2BENSG00000215114.3chr8+59347416593475075935219159352329593469535934706359358465593586270.309000.002340.045541includedHepG2SRSF1
MXEUBXN2BENSG00000215114.3chr8+59347416593475075935219159352329593469535934706359358465593586270.375000.000080.002481includedK562SRSF1
MXEUBXN2BENSG00000215114.3chr8+59352191593523295935846559358627593474165934750759359947593602430.256000.008110.053461includedK562AQR
MXEUBXN2BENSG00000215114.3chr8+59347416593475075935219159352329593469535934706359358465593586270.164000.003380.025881includedK562AQR
MXEUBXN2BENSG00000215114.3chr8+59343077593432285934571859345802593294085932951259346953593470630.165000.003370.049571includedK562HNRNPUL1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for UBXN2B is not avaliable on ENCORE database.