TMEM230

General Information

Gene Name       : TMEM230
Gene ID             : ENSG00000089063.14
Essential Gene : No

Functions

Localization

Domains (AlphaFold: TMEM230)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878TMEM230ENSG00000089063.1494.5588.1191.33ENCSR000AEF
HepG2TMEM230ENSG00000089063.14115.40200.56157.98ENCSR985KAT
K562TMEM230ENSG00000089063.1458.0055.6156.80ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for TMEM230 is not avaliable on ENCORE database.



Proteins bound to RNA
  • TMEM230 RNA is bound by 10 proteins.  







eCLIP assay for TMEM230 is not avaliable on ENCORE database.





10 proteins are bound to TMEM230 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr2050812015081220-3'-UTR,intron-Distal3.380557.24994K562YBX3
chr2050808225080897-3'-UTR,intron-Distal3.1667114.29268K562PUM2
chr2050813915081442-3'-UTR,CDS,intron-Distal3.907133.63655K562IGF2BP2
chr2050936015093644-5'-UTR,CDS,intron-Distal,intron-Proximal3.827438.94209HepG2DDX3X
chr2050935745093722-5'-UTR,CDS,intron-Distal,intron-Proximal5.368079.87158HepG2NCBP2
chr2050936455093725-5'-UTR,CDS,intron-Distal,intron-Proximal4.325305.22400HepG2DDX3X
chr2050936295093727-5'-UTR,CDS,intron-Distal,intron-Proximal4.9629410.10446K562DDX3X
chr2050923275092444-5'-UTR,intron-Distal,intron-Proximal3.461515.77624HepG2QKI
chr2050814805081529-CDS,intron-Distal3.775905.78947K562YBX3
chr2050899425090010-CDS,intron-Distal,intron-Proximal3.683284.78164HepG2PRPF8
chr2050907315090810-intron-Distal3.885933.72818HepG2ILF3
chr2050866745086768-intron-Distal,intron-Proximal4.373037.66106K562EIF4G2
chr2050931175093220-intron-Distal4.379205.87146HepG2HNRNPC
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for TMEM230 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for TMEM230 is not available on ENCORE database.

  • 80 RBPs can affect the levels of TMEM230.  








The Knockdown/knockout RNA-Seq assay for TMEM230 is not available on ENCORE database.





80 RBPs can affect the gene expression of TMEM230 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
TMEM230ENSG00000089063.102761.447603201.05260-0.213102.620802.02590HepG2ACO1
TMEM230ENSG00000089063.103117.492105144.49550-0.7226010.437808.98370HepG2ASCC1
TMEM230ENSG00000089063.101758.876902832.95960-0.687707.612406.01920HepG2BCCIP
TMEM230ENSG00000089063.104803.600103946.743800.283403.127802.31210HepG2CALR
TMEM230ENSG00000089063.102788.766003200.71940-0.198801.978801.40460HepG2CKAP4
TMEM230ENSG00000089063.101861.414203067.06910-0.720505.418104.34440HepG2CNOT7
TMEM230ENSG00000089063.102665.842503480.90210-0.384906.145304.62470HepG2YBX3
TMEM230ENSG00000089063.101448.597602960.68170-1.0313029.1521027.16630HepG2DDX19B
TMEM230ENSG00000089063.103366.654805116.01810-0.603706.321605.41750HepG2DDX6
TMEM230ENSG00000089063.103275.373104918.45620-0.586506.949006.03820HepG2EIF2S1
TMEM230ENSG00000089063.102225.778702702.50510-0.280002.711101.63910HepG2EIF3G
TMEM230ENSG00000089063.102720.692005435.61930-0.9985015.7164014.21000HepG2EIF4A3
TMEM230ENSG00000089063.103019.134204782.35800-0.663607.779606.50740HepG2EIF4G1
TMEM230ENSG00000089063.103259.839804581.36970-0.491003.042902.18970HepG2EIF4G2
TMEM230ENSG00000089063.104170.541705270.10750-0.337606.678805.81160HepG2ETF1
TMEM230ENSG00000089063.101894.433903128.32210-0.7236013.8509012.06100HepG2EWSR1
TMEM230ENSG00000089063.103682.053705483.86720-0.574706.873605.81390HepG2FXR1
TMEM230ENSG00000089063.103814.675005087.32490-0.415303.497402.75280HepG2G3BP1
TMEM230ENSG00000089063.103934.283505400.54190-0.457004.790003.60420HepG2G3BP2
TMEM230ENSG00000089063.102022.341903838.38340-0.9245020.5535018.84400HepG2HNRNPC
TMEM230ENSG00000089063.103414.888605150.83110-0.593008.575807.39890HepG2HNRNPK
TMEM230ENSG00000089063.103662.722204416.95940-0.270102.111201.51200HepG2HNRNPL
TMEM230ENSG00000089063.102883.176903813.01120-0.403308.966307.92300HepG2HNRNPU
TMEM230ENSG00000089063.101557.959305171.23790-1.7309051.9979049.52980HepG2IGF2BP2
TMEM230ENSG00000089063.103728.381905201.22600-0.480303.643602.47320HepG2KHSRP
TMEM230ENSG00000089063.102199.161103040.40910-0.467304.921903.29390HepG2LIN28B
TMEM230ENSG00000089063.103215.747805485.77970-0.7705011.260509.96870HepG2MAGOH
TMEM230ENSG00000089063.103560.261605516.55530-0.631807.101206.12530HepG2MATR3
TMEM230ENSG00000089063.102749.389703717.18700-0.435102.457601.54840HepG2MTPAP
TMEM230ENSG00000089063.104331.031005646.55990-0.382703.143902.47120HepG2NCBP2
TMEM230ENSG00000089063.103630.091704807.70160-0.405303.088902.28350HepG2NOL12
TMEM230ENSG00000089063.102647.830003231.96190-0.287602.341001.65060HepG2NSUN2
TMEM230ENSG00000089063.101971.901302803.01140-0.507402.637201.77500HepG2PABPC1
TMEM230ENSG00000089063.103942.491805009.78150-0.345607.267306.35960HepG2PCBP1
TMEM230ENSG00000089063.102865.687903400.91260-0.247002.930802.17440HepG2PPIL4
TMEM230ENSG00000089063.103103.931503714.01850-0.258902.086501.40660HepG2PRPF4
TMEM230ENSG00000089063.103553.022905097.52350-0.5207014.4910013.43040HepG2PTBP1
TMEM230ENSG00000089063.103245.966104867.78550-0.584605.708204.75650HepG2PUM2
TMEM230ENSG00000089063.104760.768105520.99220-0.213702.442701.85000HepG2QKI
TMEM230ENSG00000089063.101197.125503439.07010-1.5224018.0866016.44120HepG2RAVER1
TMEM230ENSG00000089063.104149.108505010.56140-0.272202.838302.15630HepG2RBM25
TMEM230ENSG00000089063.103768.369905673.15110-0.5902019.3281018.15020HepG2NELFE
TMEM230ENSG00000089063.103454.849805283.59360-0.6129021.1391019.70720HepG2RECQL
TMEM230ENSG00000089063.103825.610003395.693400.171902.340401.74000HepG2SAFB2
TMEM230ENSG00000089063.103783.309605307.38890-0.4884013.9081012.74080HepG2SF3B4
TMEM230ENSG00000089063.103017.537203960.01690-0.3921011.8645010.67670HepG2SMN1
TMEM230ENSG00000089063.104387.430805539.67970-0.336407.893407.19010HepG2SRSF1
TMEM230ENSG00000089063.102018.820703881.98150-0.9433012.6147010.38580HepG2SRSF3
TMEM230ENSG00000089063.103159.030304530.57770-0.520205.859804.99820HepG2SRSF5
TMEM230ENSG00000089063.103339.296304506.75100-0.432508.871507.98280HepG2SRSF9
TMEM230ENSG00000089063.103938.347605152.89620-0.387804.014403.28980HepG2SUCLG1
TMEM230ENSG00000089063.10718.477102772.78900-1.9483052.3275050.14500HepG2SUPV3L1
TMEM230ENSG00000089063.103722.042904979.04340-0.419808.270807.38620HepG2TAF15
TMEM230ENSG00000089063.103790.555904575.31370-0.271502.919102.06260HepG2TIA1
TMEM230ENSG00000089063.102651.377103705.29670-0.482808.253107.47280HepG2TIAL1
TMEM230ENSG00000089063.103009.501303738.15750-0.312805.697804.94110HepG2TRIM56
TMEM230ENSG00000089063.102435.505204065.88560-0.7393012.3742011.01280HepG2U2AF1
TMEM230ENSG00000089063.103687.830604744.47390-0.363503.215902.31370HepG2UBE2L3
TMEM230ENSG00000089063.102239.243003381.27270-0.594604.606302.96410HepG2XRCC5
TMEM230ENSG00000089063.104680.165404190.440400.159402.529101.99970HepG2ZNF622
TMEM230ENSG00000089063.101788.812001432.379600.320504.235203.55930K562AGGF1
TMEM230ENSG00000089063.101980.219501490.450800.409804.117603.31840K562AKAP8L
TMEM230ENSG00000089063.101881.766001563.832100.266902.751101.84080K562ATP5C1
TMEM230ENSG00000089063.10885.594101116.94270-0.334803.269301.81560K562BCCIP
TMEM230ENSG00000089063.101232.786001680.57290-0.447004.224802.39090K562DDX19B
TMEM230ENSG00000089063.101586.458001308.332900.278002.701701.50770K562DDX21
TMEM230ENSG00000089063.10630.71250815.54560-0.370802.297201.46470K562EFTUD2
TMEM230ENSG00000089063.10597.88440934.16420-0.643807.004905.70540K562EIF4A3
TMEM230ENSG00000089063.101876.696101407.073600.415404.000402.96790K562FIP1L1
TMEM230ENSG00000089063.101357.073101000.504500.439702.666301.97520K562G3BP2
TMEM230ENSG00000089063.101541.160101287.116000.259802.422201.36220K562GLRX3
TMEM230ENSG00000089063.10557.029101169.48790-1.0701019.3809017.87900K562HNRNPC
TMEM230ENSG00000089063.102335.729401907.636300.292002.239601.52060K562HSPD1
TMEM230ENSG00000089063.10699.124201057.26710-0.596704.608603.14620K562IGF2BP2
TMEM230ENSG00000089063.10855.507901075.56640-0.330202.461301.35540K562IGF2BP3
TMEM230ENSG00000089063.10777.945701111.59780-0.514904.323103.26800K562MAGOH
TMEM230ENSG00000089063.101669.574101242.018800.426702.666601.80300K562NAA15
TMEM230ENSG00000089063.10665.29100989.12930-0.572205.824004.39210K562PCBP2
TMEM230ENSG00000089063.102072.567701599.173900.374002.742701.91510K562PCBP3
TMEM230ENSG00000089063.101556.966001226.569800.344002.130301.42810K562POLR2G
TMEM230ENSG00000089063.101957.013401597.365300.292902.173301.45010K562PPIG
TMEM230ENSG00000089063.10822.563901048.59980-0.350302.504601.65040K562PSIP1
TMEM230ENSG00000089063.102601.459201478.154700.8154013.4326012.28190K562PUS1
TMEM230ENSG00000089063.101942.762001440.208800.431706.036305.18660K562RBM15
TMEM230ENSG00000089063.10699.682601035.79290-0.566005.764804.49530K562RBM22
TMEM230ENSG00000089063.101154.91580811.526200.509003.313701.85640K562RRP9
TMEM230ENSG00000089063.10820.688601040.20970-0.342003.043702.14560K562SF3B4
TMEM230ENSG00000089063.10658.133401058.66340-0.685808.965107.70180K562SRSF1
TMEM230ENSG00000089063.10308.80740768.53380-1.3154017.0402014.51920K562SUPV3L1
TMEM230ENSG00000089063.10801.755801033.59820-0.366402.885502.04760K562TIA1
TMEM230ENSG00000089063.10830.551601001.49650-0.270001.994801.31330K562U2AF2
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for TMEM230 is not available on ENCORE database.





30 RBPs can affect the splicing of TMEM230 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SETMEM230ENSG00000089063.10chr20-5092409509245450899775090091509338850935500.192000.005390.05628includedHepG2U2AF2
SETMEM230ENSG00000089063.10chr20-508683350869565080485508157750899775090091-0.058000.000000.00008excludedHepG2U2AF2
SETMEM230ENSG00000089063.10chr20-5092409509245450899775090091509337550933990.150000.000100.01326includedHepG2DDX3X
SETMEM230ENSG00000089063.10chr20-5092145509225150899775090091509338850936880.211000.001340.06432includedHepG2PTBP1
SETMEM230ENSG00000089063.10chr20-5092409509245450899775090091509338850935500.603000.000090.01609includedHepG2SSB
SETMEM230ENSG00000089063.10chr20-5092145509225150899775090091509338850936880.293000.000180.01800includedHepG2TIAL1
SETMEM230ENSG00000089063.10chr20-508683350868685080485508157750899775090091-0.069000.001660.06325excludedHepG2HNRNPU
SETMEM230ENSG00000089063.10chr20-5092145509225150899775090091509360650937330.163000.000000.00000includedHepG2HNRNPC
SETMEM230ENSG00000089063.10chr20-5092145509225150899775090091509338850936880.420000.000530.03863includedHepG2SRSF9
MXETMEM230ENSG00000089063.10chr20-508683350869565089977509009150804855081577509360650937490.155000.000000.000021includedHepG2MATR3
MXETMEM230ENSG00000089063.10chr20-508683350869565089977509009150804855081577509360650937490.108000.000020.007181includedHepG2HNRNPA1
MXETMEM230ENSG00000089063.10chr20-508683350869565089977509009150804855081577509360650937490.137000.000070.014121includedHepG2KHSRP
MXETMEM230ENSG00000089063.10chr20-508683350869565089977509009150804855081577509360650937490.129000.000010.001371includedHepG2PTBP1
MXETMEM230ENSG00000089063.10chr20-508683350869565089977509009150804855081577509337550936880.143000.000000.000001includedHepG2TAF15
MXETMEM230ENSG00000089063.10chr20-50868335086956508997750900915080485508157750936065093749-0.132000.000000.000192includedHepG2TAF15
MXETMEM230ENSG00000089063.10chr20-50868335086956508997750900915080485508157750936065093749-0.143000.001230.010912includedK562AQR
MXETMEM230ENSG00000089063.10chr20-508683350869565089977509009150804855081577509360650937490.200000.000000.000001includedHepG2XPO5
MXETMEM230ENSG00000089063.10chr20-508683350869565089977509009150804855081577509360650937490.114000.000040.006031includedHepG2NOLC1
MXETMEM230ENSG00000089063.10chr20-50868335086956508997750900915080485508157750936065093749-0.227000.000250.005332includedHepG2SFPQ
MXETMEM230ENSG00000089063.10chr20-508683350869565089977509009150804855081577509360650937490.141000.000000.000011includedHepG2NOL12
MXETMEM230ENSG00000089063.10chr20-508683350869565089977509009150804855081577509360650937490.118000.000120.006951includedHepG2XRN2
MXETMEM230ENSG00000089063.10chr20-508683350869565089977509009150804855081577509360650937490.179000.000000.000001includedHepG2DDX55
MXETMEM230ENSG00000089063.10chr20-508683350869565089977509009150804855081577509360650937490.147000.000000.000081includedHepG2PCBP1
MXETMEM230ENSG00000089063.10chr20-508683350869565089977509009150804855081577509360650937490.120000.000380.059491includedHepG2CDC40
MXETMEM230ENSG00000089063.10chr20-508683350869565089977509009150804855081577509360650937490.103000.000430.019081includedHepG2SF3B4
MXETMEM230ENSG00000089063.10chr20-508683350869565089977509009150804855081577509360650937490.152000.003110.093881includedHepG2DROSHA
MXETMEM230ENSG00000089063.10chr20-508683350869565089977509009150804855081577509360650937490.111000.000100.009691includedHepG2AKAP1
MXETMEM230ENSG00000089063.10chr20-508683350869565089977509009150804855081577509360650937490.192000.000000.000001includedHepG2HNRNPU
MXETMEM230ENSG00000089063.10chr20-508683350869565089977509009150804855081577509360650937490.126000.000010.001351includedHepG2DDX3X
MXETMEM230ENSG00000089063.10chr20-508683350869565089977509009150804855081577509360650937490.148000.000060.004141includedHepG2SUPV3L1
MXETMEM230ENSG00000089063.10chr20-508683350869565089977509009150804855081577509360650937490.131000.000000.000771includedHepG2ILF3
MXETMEM230ENSG00000089063.10chr20-50868335086956508997750900915080485508157750933755093688-0.093000.000010.001792includedHepG2LARP4
MXETMEM230ENSG00000089063.10chr20-508683350869565089977509009150804855081577509360650937490.118000.000030.002231includedHepG2HNRNPL
MXETMEM230ENSG00000089063.10chr20-50868335086956508997750900915080485508157750933755093688-0.056000.000070.011322includedHepG2SSB
MXETMEM230ENSG00000089063.10chr20-508683350869565089977509009150804855081577509360650937490.144000.000000.000101includedHepG2NCBP2
MXETMEM230ENSG00000089063.10chr20-508683350869565089977509009150804855081577509360650937490.161000.000000.000001includedHepG2TIAL1
MXETMEM230ENSG00000089063.10chr20-508683350869565089977509009150804855081577509360650937490.126000.000120.019041includedHepG2PRPF8

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for TMEM230 is not avaliable on ENCORE database.