TFE3

General Information

Gene Name       : TFE3
Gene ID             : ENSG00000068323.16
Essential Gene : No

Functions

Localization

Domains (AlphaFold: TFE3)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878TFE3ENSG00000068323.167.2010.949.07ENCSR000AEF
HepG2TFE3ENSG00000068323.1616.8713.6715.27ENCSR985KAT
K562TFE3ENSG00000068323.1614.9012.5813.74ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for TFE3 is not avaliable on ENCORE database.



Proteins bound to RNA
  • TFE3 RNA is bound by 14 proteins.  







eCLIP assay for TFE3 is not avaliable on ENCORE database.





14 proteins are bound to TFE3 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chrX4888734048887425-3'-UTR,intron-Distal5.3263117.33080K562UPF1
chrX4889173948891799-3'-UTR,CDS,intron-Distal,intron-Proximal3.853015.23469HepG2AQR
chrX4888702548887092-3'-UTR,intron-Distal4.0121013.47833K562UPF1
chrX4889167348891752-3'-UTR,CDS,intron-Distal3.633945.61746K562LIN28B
chrX4888720148887245-3'-UTR,intron-Distal4.105168.62096K562UPF1
chrX4888762148887676-3'-UTR,CDS,intron-Distal5.016754.92687K562PCBP1
chrX4889126148891337-3'-UTR,CDS,intron-Distal,intron-Proximal4.188773.56713HepG2SF3B4
chrX4888641448886508-3'-UTR,intron-Distal3.9576418.51029K562UPF1
chrX4888682848886922-3'-UTR,intron-Distal4.5294519.25318K562UPF1
chrX4888711948887201-3'-UTR,intron-Distal4.6787721.20110K562UPF1
chrX4889101948891090-3'-UTR,CDS,intron-Distal,intron-Proximal3.955418.26514HepG2U2AF2
chrX4888894048889029-3'-UTR,CDS,intron-Distal3.103293.00343HepG2GRWD1
chrX4889174048891800-3'-UTR,CDS,intron-Distal,intron-Proximal3.715486.32052K562AQR
chrX4889094748890982-3'-UTR,CDS,intron-Distal,intron-Proximal5.344188.34710K562AQR
chrX4888658448886646-3'-UTR,intron-Distal4.8583120.42065K562UPF1
chrX4888707648887181-3'-UTR,intron-Distal3.595204.54434HepG2UPF1
chrX4888666348886726-3'-UTR,intron-Distal5.677138.00788K562UPF1
chrX4888748648887571-3'-UTR,intron-Distal5.3898418.13060K562UPF1
chrX4889172448891791-3'-UTR,CDS,intron-Distal,intron-Proximal4.809485.93128HepG2PRPF8
chrX4889164548891694-3'-UTR,CDS,intron-Distal,intron-Proximal3.495613.34848HepG2PPIG
chrX4888674048886782-3'-UTR,intron-Distal3.999418.62096K562UPF1
chrX4889173048891788-3'-UTR,CDS,intron-Distal,intron-Proximal4.470405.02679K562BUD13
chrX4888694748887023-3'-UTR,intron-Distal4.3407114.62996K562UPF1
chrX4889578748895803-5'-UTR,CDS,intron-Distal,intron-Proximal4.190638.72318K562YBX3
chrX4890071648900813-5'-UTR,CDS,intron-Distal4.591947.84643K562GEMIN5
chrX4890072648900857-5'-UTR,CDS,intron-Distal3.999903.58858HepG2NCBP2
chrX4889573748895787-5'-UTR,CDS,intron-Distal,intron-Proximal5.299289.56355K562YBX3
chrX4890075648900808-5'-UTR,intron-Distal4.766233.32488HepG2DDX3X
chrX4889802148898097-CDS,intron-Distal,intron-Proximal4.653693.69821K562DDX3X
chrX4889163848891648-intron-Distal,intron-Proximal4.708594.13847K562AQR
chrX4889179048891843-intron-Distal,intron-Proximal3.248423.33980HepG2SF3B4
chrX4889160348891638-intron-Distal,intron-Proximal5.123635.69951K562AQR
chrX4889093548890947-intron-Distal,intron-Proximal4.312117.15298K562AQR
chrX4890056848900637-intron-Distal6.0608611.02807K562AQR
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for TFE3 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for TFE3 is not available on ENCORE database.

  • 87 RBPs can affect the levels of TFE3.  








The Knockdown/knockout RNA-Seq assay for TFE3 is not available on ENCORE database.





87 RBPs can affect the gene expression of TFE3 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
TFE3ENSG00000068323.121346.48820961.810600.485303.329802.29940HepG2ABCF1
TFE3ENSG00000068323.12987.95150736.006000.424605.519004.71880HepG2ACO1
TFE3ENSG00000068323.12710.362101090.22820-0.618004.836204.15910HepG2AKAP1
TFE3ENSG00000068323.121019.97550739.433400.463906.015404.92320HepG2AKAP8L
TFE3ENSG00000068323.121588.49170919.128200.7892019.3450017.83550HepG2AUH
TFE3ENSG00000068323.121568.35010735.956101.0915020.7461019.33990HepG2BOP1
TFE3ENSG00000068323.12618.65070735.80930-0.250202.010101.43090HepG2CKAP4
TFE3ENSG00000068323.12985.52050675.640000.544504.913904.02010HepG2CPSF6
TFE3ENSG00000068323.121053.04200818.180500.364004.708903.78130HepG2DAZAP1
TFE3ENSG00000068323.121676.11820897.276700.9014010.817409.68750HepG2DDX6
TFE3ENSG00000068323.121019.04830704.148800.533207.348806.34410HepG2DKC1
TFE3ENSG00000068323.12668.21090531.375000.330502.493801.82210HepG2DNAJC21
TFE3ENSG00000068323.12731.31670526.619400.473605.857504.96120HepG2DNAJC2
TFE3ENSG00000068323.12718.18140492.491400.544103.862902.80570HepG2EIF3D
TFE3ENSG00000068323.121602.61820927.969000.788206.818005.76940HepG2EIF4B
TFE3ENSG00000068323.12996.23870807.214900.303402.981702.11850HepG2EIF4G1
TFE3ENSG00000068323.121136.22330773.254900.555105.465804.34230HepG2EIF4G2
TFE3ENSG00000068323.121282.618301055.277900.281402.739702.14150HepG2ETF1
TFE3ENSG00000068323.121146.06120719.176800.672208.792107.31880HepG2EWSR1
TFE3ENSG00000068323.121269.16290971.160300.386002.275601.57390HepG2FIP1L1
TFE3ENSG00000068323.12850.45610473.339600.845308.457006.68140HepG2GNB2L1
TFE3ENSG00000068323.121151.61200765.869300.588404.906504.06980HepG2GPKOW
TFE3ENSG00000068323.121193.70140788.215200.598703.556801.99040HepG2HNRNPA0
TFE3ENSG00000068323.12762.41730536.465000.507004.068903.30820HepG2HNRNPA1
TFE3ENSG00000068323.121251.93900890.681800.491107.296606.20200HepG2HNRNPF
TFE3ENSG00000068323.12701.31870903.64200-0.365702.417501.76250HepG2HNRNPK
TFE3ENSG00000068323.121341.04480877.071300.612508.880307.65430HepG2IGF2BP1
TFE3ENSG00000068323.121273.11560906.613800.489703.996503.19870HepG2IGF2BP2
TFE3ENSG00000068323.12609.74310912.02120-0.580903.900502.69220HepG2KHSRP
TFE3ENSG00000068323.121274.34430962.088700.405402.836502.17350HepG2MAGOH
TFE3ENSG00000068323.121280.88110851.243700.589402.405701.58870HepG2PABPC1
TFE3ENSG00000068323.121014.95520774.474000.390003.232202.59420HepG2PUF60
TFE3ENSG00000068323.121012.18640821.542000.301002.388101.76450HepG2PUM2
TFE3ENSG00000068323.12939.44350749.664500.325503.134602.48770HepG2PUS1
TFE3ENSG00000068323.121019.36030543.561500.907006.013105.00010HepG2RAVER1
TFE3ENSG00000068323.121298.79340882.018000.558208.486607.69500HepG2RBM22
TFE3ENSG00000068323.12729.892001033.49000-0.501806.635505.74010HepG2RECQL
TFE3ENSG00000068323.122218.16370959.423401.2090028.4160026.73210HepG2RPLP0
TFE3ENSG00000068323.12737.26510534.244000.464602.225001.37670HepG2RPS10
TFE3ENSG00000068323.12701.65370515.837000.443702.516801.75170HepG2RPS2
TFE3ENSG00000068323.121538.79340980.681400.649805.149304.21070HepG2SF3A3
TFE3ENSG00000068323.121553.10520723.419501.1022020.4687018.74490HepG2SF3B1
TFE3ENSG00000068323.12894.01350555.111300.687405.093603.76460HepG2SMNDC1
TFE3ENSG00000068323.122356.97710996.208401.2423058.2577056.72600HepG2SRFBP1
TFE3ENSG00000068323.12920.43830764.693500.267302.333901.75310HepG2SRSF5
TFE3ENSG00000068323.121277.48190875.051800.545809.265508.12120HepG2SRSF7
TFE3ENSG00000068323.121092.79570881.506500.309903.424002.82370HepG2SRSF9
TFE3ENSG00000068323.121721.32390864.947500.9927032.6860031.36660HepG2SSB
TFE3ENSG00000068323.12911.39480655.631900.475103.975602.85930HepG2SUPT6H
TFE3ENSG00000068323.121174.58400542.985301.1131013.3320012.03290HepG2SUPV3L1
TFE3ENSG00000068323.12626.68580973.92920-0.636108.841107.93010HepG2TAF15
TFE3ENSG00000068323.12966.73790712.443200.440203.399402.60480HepG2TARDBP
TFE3ENSG00000068323.12841.26740576.049900.546305.993405.31050HepG2TIAL1
TFE3ENSG00000068323.121450.62480830.670200.8042010.185008.96220HepG2U2AF1
TFE3ENSG00000068323.121125.43950869.714100.371804.656003.78820HepG2UPF1
TFE3ENSG00000068323.12744.76310497.122300.583102.952801.91480HepG2UPF2
TFE3ENSG00000068323.121376.43050839.675400.7129015.6386014.38650HepG2UTP3
TFE3ENSG00000068323.12809.73320683.107900.245201.946401.36770HepG2ZC3H8
TFE3ENSG00000068323.121324.02050956.519600.469008.696107.86600HepG2ZNF622
TFE3ENSG00000068323.122547.037601693.538900.5887014.9734013.76230K562AGGF1
TFE3ENSG00000068323.122556.647601762.214400.536807.159506.06660K562AKAP8L
TFE3ENSG00000068323.12773.72660624.820200.308302.712601.76050K562BCLAF1
TFE3ENSG00000068323.12947.86330714.466800.407702.821901.94070K562BOP1
TFE3ENSG00000068323.12932.36140759.666700.295402.005401.32930K562CPSF6
TFE3ENSG00000068323.12983.669701279.29730-0.379104.869704.03940K562DDX47
TFE3ENSG00000068323.12857.84850578.373800.568604.727403.51820K562EFTUD2
TFE3ENSG00000068323.121420.90410823.403500.7870016.3540014.81880K562EIF2S2
TFE3ENSG00000068323.12325.03780658.51490-1.018607.029105.37750K562EIF3A
TFE3ENSG00000068323.121067.64540860.168400.311602.268201.52270K562EIF4A3
TFE3ENSG00000068323.121047.71000742.857800.496004.552803.44430K562FIP1L1
TFE3ENSG00000068323.121083.36000772.974700.486904.198703.14420K562FMR1
TFE3ENSG00000068323.12328.14830548.15740-0.740201.955301.37320K562G3BP2
TFE3ENSG00000068323.12991.60000725.281600.451103.867402.93620K562GPKOW
TFE3ENSG00000068323.12832.540901096.80560-0.397703.640802.40460K562HNRNPA1
TFE3ENSG00000068323.121675.180001090.377300.619402.530101.37960K562HNRNPA2B1
TFE3ENSG00000068323.12906.602101156.19640-0.350802.907201.82070K562HNRNPL
TFE3ENSG00000068323.121006.756001214.68230-0.270902.262901.45500K562HNRNPU
TFE3ENSG00000068323.121702.780801007.111900.7576010.729809.18930K562HSPD1
TFE3ENSG00000068323.121106.21080772.221100.518403.674902.42890K562IGF2BP2
TFE3ENSG00000068323.122349.824001870.113300.329303.223402.32680K562KIF1C
TFE3ENSG00000068323.12935.18150720.976100.375203.011701.40340K562LSM11
TFE3ENSG00000068323.122191.362001790.188300.291602.276201.33090K562MAK16
TFE3ENSG00000068323.122557.261202095.004400.287502.870401.94010K562MBNL1
TFE3ENSG00000068323.121418.50550953.521900.572902.199601.33780K562PABPN1
TFE3ENSG00000068323.121051.790201339.40170-0.348702.222801.47780K562PCBP3
TFE3ENSG00000068323.121013.22840789.108800.360602.876901.42150K562PHF6
TFE3ENSG00000068323.12786.841901027.36910-0.384803.482402.57750K562POLR2G
TFE3ENSG00000068323.121176.77760843.337500.480604.356903.29570K562PPIG
TFE3ENSG00000068323.12956.74190788.137900.279601.994801.41430K562PTBP1
TFE3ENSG00000068323.122315.493301747.558600.405904.216303.56730K562PUS1
TFE3ENSG00000068323.122363.049701702.794400.472604.518203.77920K562RBM15
TFE3ENSG00000068323.121778.90510871.876301.028704.888103.13910K562SF1
TFE3ENSG00000068323.12927.94500729.851100.346302.248201.32080K562SRSF5
TFE3ENSG00000068323.121068.76260781.908900.450803.651102.83410K562TARDBP
TFE3ENSG00000068323.12958.92960754.264700.346302.782601.96210K562TIA1
TFE3ENSG00000068323.121183.85310740.648800.676508.101906.28160K562TRIM56
TFE3ENSG00000068323.12779.80150576.645800.435302.786801.76420K562UCHL5
TFE3ENSG00000068323.121529.087901321.964900.209902.056101.43080K562UPF1
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for TFE3 is not available on ENCORE database.






No RBPs affect the alternative splcing events of TFE3 on ENCORE database.





The Knockdown/knockout RNA-Seq assay for TFE3 is not avaliable on ENCORE database.