SWI5

General Information

Gene Name       : SWI5
Gene ID             : ENSG00000175854.11
Essential Gene : No

Functions

Localization

Domains (AlphaFold: SWI5)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878SWI5ENSG00000175854.119.989.649.81ENCSR000AEF
HepG2SWI5ENSG00000175854.1153.3634.0043.68ENCSR985KAT
K562SWI5ENSG00000175854.1174.8264.5069.66ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for SWI5 is not avaliable on ENCORE database.



Proteins bound to RNA
  • SWI5 RNA is bound by 11 proteins.  







eCLIP assay for SWI5 is not avaliable on ENCORE database.





11 proteins are bound to SWI5 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr9131050966131051061+3'-UTR,CDS4.373264.30926HepG2LARP4
chr9131051048131051110+3'-UTR5.900766.59792K562PABPC4
chr9131051203131051245+3'-UTR6.3320111.93389K562PABPC4
chr9131038566131038683+5'-UTR,CDS,intron-Distal,intron-Proximal5.0807015.40823K562DDX3X
chr9131046867131046911+CDS,intron-Proximal3.833624.82082K562ZNF622
chr9131038633131038690+CDS,intron-Distal,intron-Proximal3.958047.03491K562RBM15
chr9131046788131046845+CDS,intron-Proximal3.920257.37356K562DDX3X
chr9131050931131050963+CDS3.100293.87559K562YBX3
chr9131038986131039003+CDS5.326434.54356K562DDX3X
chr9131039195131039299+intron-Distal4.174866.43614HepG2PCBP2
chr9131039133131039306+intron-Distal,intron-Proximal3.944376.67846K562HNRNPK
chr9131050596131050663+intron-Distal4.838054.75034HepG2XPO5
chr9131039107131039290+intron-Distal,intron-Proximal3.999509.84066HepG2DDX59
chr9131046910131046967+intron-Proximal3.964544.49024K562AQR
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for SWI5 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for SWI5 is not available on ENCORE database.

  • 80 RBPs can affect the levels of SWI5.  








The Knockdown/knockout RNA-Seq assay for SWI5 is not available on ENCORE database.





80 RBPs can affect the gene expression of SWI5 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
SWI5ENSG00000175854.7124.88570199.06960-0.672702.641601.59180HepG2AATF
SWI5ENSG00000175854.7190.25680269.08360-0.500102.791602.02160HepG2AKAP8L
SWI5ENSG00000175854.7385.80030245.629600.651303.055502.06780HepG2BCCIP
SWI5ENSG00000175854.7141.67830213.41800-0.591102.522601.66330HepG2BCLAF1
SWI5ENSG00000175854.7412.81750285.002600.534402.499701.57990HepG2CCAR1
SWI5ENSG00000175854.7571.21720361.059000.661704.965303.94540HepG2CIRBP
SWI5ENSG00000175854.7203.46960267.76520-0.396202.018301.43760HepG2CKAP4
SWI5ENSG00000175854.7486.51120342.125900.507804.485103.70160HepG2CELF1
SWI5ENSG00000175854.7467.58090367.804000.346202.735401.99700HepG2DAZAP1
SWI5ENSG00000175854.7299.43460219.558200.447502.040501.44740HepG2DDX21
SWI5ENSG00000175854.785.42450193.94500-1.182904.769503.49710HepG2DDX59
SWI5ENSG00000175854.7321.40590202.003200.669904.034902.82140HepG2DDX5
SWI5ENSG00000175854.7358.23690256.241800.483303.025402.32110HepG2DKC1
SWI5ENSG00000175854.7235.08450170.734200.461302.469901.84770HepG2DNAJC2
SWI5ENSG00000175854.7711.83650401.506700.826007.146506.11990HepG2EIF4A3
SWI5ENSG00000175854.7277.82160390.94480-0.492801.968501.38130HepG2EIF4B
SWI5ENSG00000175854.7195.50830362.91750-0.892407.708006.44150HepG2EIF4G1
SWI5ENSG00000175854.7490.55630347.641600.496703.312002.42520HepG2EIF4G2
SWI5ENSG00000175854.7273.94100453.98110-0.728807.184506.29140HepG2ETF1
SWI5ENSG00000175854.7176.45080279.74610-0.664903.850402.93190HepG2FUBP3
SWI5ENSG00000175854.7177.58890255.69840-0.525903.047702.02740HepG2HDGF
SWI5ENSG00000175854.7298.03930173.909700.777104.696903.88470HepG2HNRNPA1
SWI5ENSG00000175854.7253.93530192.162200.402001.955901.43720HepG2HNRNPU
SWI5ENSG00000175854.7276.03210196.287600.491802.880902.13450HepG2ILF2
SWI5ENSG00000175854.7270.00260407.54210-0.594003.079602.41710HepG2MATR3
SWI5ENSG00000175854.7250.68580371.46730-0.567403.083302.32310HepG2PABPC4
SWI5ENSG00000175854.7170.02150360.25040-1.0833011.9449010.82560HepG2PCBP1
SWI5ENSG00000175854.796.32530186.26600-0.951404.369503.37790HepG2PRPF8
SWI5ENSG00000175854.7235.34260366.55180-0.639304.888904.20520HepG2PTBP1
SWI5ENSG00000175854.7489.70660348.172600.492003.472202.81470HepG2PUF60
SWI5ENSG00000175854.7238.77960369.33860-0.629304.064503.25750HepG2PUM2
SWI5ENSG00000175854.7196.95420272.80470-0.470002.656002.04840HepG2PUS1
SWI5ENSG00000175854.796.97830185.96710-0.939302.396001.73680HepG2RAVER1
SWI5ENSG00000175854.7153.39860360.30760-1.2319012.3192010.95870HepG2RBM25
SWI5ENSG00000175854.7303.31400407.95060-0.427602.686102.15110HepG2NELFE
SWI5ENSG00000175854.7243.84930379.92590-0.639705.003904.20540HepG2RECQL
SWI5ENSG00000175854.7101.69240184.25160-0.857503.479802.61210HepG2RRP9
SWI5ENSG00000175854.7116.35020182.82890-0.652002.259401.61920HepG2SF3B1
SWI5ENSG00000175854.7125.09100381.65720-1.6093021.3044019.91850HepG2SF3B4
SWI5ENSG00000175854.785.63260203.43550-1.248305.272304.18410HepG2SNRNP70
SWI5ENSG00000175854.7249.54110428.55360-0.780207.926707.19940HepG2SRFBP1
SWI5ENSG00000175854.7252.30310324.07310-0.361202.038101.55000HepG2SRSF9
SWI5ENSG00000175854.7738.81000372.070400.9895018.0900017.02200HepG2SSB
SWI5ENSG00000175854.7443.51820240.410100.883405.519504.61550HepG2SUPV3L1
SWI5ENSG00000175854.7217.21130358.02410-0.721005.877605.11230HepG2TAF15
SWI5ENSG00000175854.7261.96930186.726700.488402.325201.85860HepG2TIAL1
SWI5ENSG00000175854.7261.18120188.390300.471202.501401.95940HepG2TRIM56
SWI5ENSG00000175854.739.03910188.90830-2.274707.370205.67990HepG2U2AF2
SWI5ENSG00000175854.7463.45390220.110401.074106.764005.15290HepG2UPF2
SWI5ENSG00000175854.7358.57400232.845000.622804.735103.98570HepG2UTP3
SWI5ENSG00000175854.7454.91370236.657800.942706.800105.67790HepG2XRN2
SWI5ENSG00000175854.7141.09340194.49900-0.463101.917701.34390HepG2ZC3H8
SWI5ENSG00000175854.7373.23720265.246600.492703.741703.13080HepG2ZNF622
SWI5ENSG00000175854.71287.596301041.567800.305802.982702.39670K562AGGF1
SWI5ENSG00000175854.71396.408201083.811600.365503.269002.55700K562AKAP8L
SWI5ENSG00000175854.71593.391601244.688200.356203.874902.44890K562CCDC124
SWI5ENSG00000175854.71229.03210841.257000.546805.682603.87540K562CIRBP
SWI5ENSG00000175854.71249.44290835.466300.580507.388305.58980K562DDX3X
SWI5ENSG00000175854.71053.60240847.051400.314702.901401.55130K562DDX6
SWI5ENSG00000175854.7498.07620697.16290-0.485102.680001.78240K562EFTUD2
SWI5ENSG00000175854.7275.01580479.83650-0.803003.987002.75520K562EIF3A
SWI5ENSG00000175854.7754.43890553.434400.446903.443802.48910K562FIP1L1
SWI5ENSG00000175854.7602.05850907.73190-0.592407.807406.85790K562FXR1
SWI5ENSG00000175854.7220.34260574.25790-1.3820010.307508.77640K562G3BP2
SWI5ENSG00000175854.7707.44900470.646700.587904.524303.51230K562GPKOW
SWI5ENSG00000175854.72259.896001366.729900.7254012.2643010.65260K562GRSF1
SWI5ENSG00000175854.7506.99190783.92280-0.628705.338203.57950K562HNRNPK
SWI5ENSG00000175854.7653.49020455.256700.521403.445802.39710K562HNRNPM
SWI5ENSG00000175854.71053.60650750.270800.489804.352103.36100K562HSPD1
SWI5ENSG00000175854.71105.55970785.049000.493802.368101.43920K562IGF2BP2
SWI5ENSG00000175854.7641.24960824.93240-0.363402.828201.97800K562MAGOH
SWI5ENSG00000175854.71064.69580823.240200.371003.174502.18190K562MATR3
SWI5ENSG00000175854.7978.480001288.46400-0.397003.421402.39190K562MBNL1
SWI5ENSG00000175854.72271.271501756.493000.370702.940901.77130K562MSI2
SWI5ENSG00000175854.7509.95700733.96310-0.525304.335103.10510K562PCBP2
SWI5ENSG00000175854.71127.77370628.328200.843808.350706.74040K562PPIG
SWI5ENSG00000175854.7402.75220678.42600-0.752304.260503.33160K562PRPF8
SWI5ENSG00000175854.7334.69260544.27310-0.701506.740904.56860K562RBM25
SWI5ENSG00000175854.7426.83940581.93380-0.447202.986301.86220K562SAFB
SWI5ENSG00000175854.7242.30060596.73610-1.3003013.0799011.13540K562SF3B4
SWI5ENSG00000175854.7816.22730972.72140-0.253102.255301.40110K562SRPK2
SWI5ENSG00000175854.7459.47730655.10910-0.511703.402702.49360K562SYNCRIP
SWI5ENSG00000175854.71000.79930795.184400.331702.165801.53480K562TARDBP
SWI5ENSG00000175854.7989.51820767.053000.367303.082002.20980K562TIA1
SWI5ENSG00000175854.7282.00440556.20270-0.979909.089206.92450K562U2AF1
SWI5ENSG00000175854.7190.30970574.58020-1.5942018.7415016.59570K562U2AF2
SWI5ENSG00000175854.71413.254101020.198500.470104.306203.42890K562UPF1
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for SWI5 is not available on ENCORE database.





2 RBPs can affect the splicing of SWI5 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
A3SSSWI5ENSG00000175854.7chr9+1310509101310510121310509301310510121310482171310483120.061000.000000.00000longerK562AQR
A3SSSWI5ENSG00000175854.7chr9+131038865131039034131038924131039034131038424131038681-0.165000.002550.01595shorterK562AQR
MXESWI5ENSG00000175854.7chr9+1310389851310390341310467881310469101310385221310386811310482171310483120.159000.000170.005811includedK562PRPF8

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for SWI5 is not avaliable on ENCORE database.