SUMO1

General Information

Gene Name       : SUMO1
Gene ID             : ENSG00000116030.16
Essential Gene : No

Functions

Localization

Domains (AlphaFold: SUMO1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878SUMO1ENSG00000116030.16212.26157.75185.00ENCSR000AEF
HepG2SUMO1ENSG00000116030.1699.21211.03155.12ENCSR985KAT
K562SUMO1ENSG00000116030.1684.1794.1289.15ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for SUMO1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • SUMO1 RNA is bound by 15 proteins.  







eCLIP assay for SUMO1 is not avaliable on ENCORE database.





15 proteins are bound to SUMO1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr2203071914203071951-3'-UTR,intron-Distal,intron-Proximal4.662306.65598K562TIA1
chr2203071847203071914-3'-UTR,intron-Distal,intron-Proximal3.177266.64817K562TIA1
chr2203071698203071800-3'-UTR,intron-Distal,intron-Proximal3.191255.16029K562DDX55
chr2203071706203071722-3'-UTR,intron-Distal,intron-Proximal3.057753.88666HepG2LARP4
chr2203071660203071706-3'-UTR,intron-Distal,intron-Proximal3.745974.08867HepG2LARP4
chr2203071856203071926-3'-UTR,intron-Distal,intron-Proximal3.291574.04650HepG2TIAL1
chr2203103179203103279-5'-UTR,intron-Distal,intron-Proximal3.542514.06757K562UCHL5
chr2203103163203103289-5'-UTR,CDS,intron-Distal,intron-Proximal4.6547230.10353K562DDX3X
chr2203102972203103049-intron-Distal5.083673.59041K562DROSHA
chr2203102972203103051-intron-Distal4.491414.06667K562GTF2F1
chr2203082672203082765-intron-Distal5.256007.38423HepG2PCBP2
chr2203091297203091439-intron-Distal4.022013.62238HepG2MATR3
chr2203102990203103065-intron-Distal5.073878.83237HepG2CSTF2T
chr2203103003203103061-intron-Distal4.379747.26711HepG2EFTUD2
chr2203082606203082645-intron-Distal4.411833.70058HepG2XPO5
chr2203102986203103051-intron-Distal4.185573.59342K562CSTF2T
chr2203102997203103072-intron-Distal4.801966.11395HepG2GTF2F1
chr2203102968203103076-intron-Distal4.7996614.08721HepG2PRPF4
chr2203102594203102679-intron-Distal4.316843.30705HepG2GTF2F1
chr2203102984203103058-intron-Distal4.9744313.48337HepG2FAM120A
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for SUMO1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for SUMO1 is not available on ENCORE database.

  • 72 RBPs can affect the levels of SUMO1.  








The Knockdown/knockout RNA-Seq assay for SUMO1 is not available on ENCORE database.





72 RBPs can affect the gene expression of SUMO1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
SUMO1ENSG00000116030.122566.138402281.892600.169301.934901.40960HepG2ACO1
SUMO1ENSG00000116030.123237.088503964.77520-0.292506.616205.54010HepG2DAZAP1
SUMO1ENSG00000116030.123310.372804385.15730-0.405602.640302.02770HepG2DDX3X
SUMO1ENSG00000116030.122235.082703621.27140-0.696205.912005.06240HepG2EIF2S1
SUMO1ENSG00000116030.122418.360404002.23470-0.726807.984406.90180HepG2EIF4A3
SUMO1ENSG00000116030.122639.875502229.876800.243402.058001.33930HepG2EWSR1
SUMO1ENSG00000116030.121727.075002254.92540-0.384702.838702.04170HepG2FUBP3
SUMO1ENSG00000116030.123236.347804037.16690-0.319002.430601.78050HepG2FXR1
SUMO1ENSG00000116030.122778.249403745.54830-0.431003.606502.85120HepG2G3BP1
SUMO1ENSG00000116030.121224.445502012.31000-0.716705.222003.68910HepG2GRSF1
SUMO1ENSG00000116030.121742.254202227.86550-0.354703.496102.78010HepG2HNRNPA1
SUMO1ENSG00000116030.121775.351402477.99390-0.481104.835303.93730HepG2HNRNPC
SUMO1ENSG00000116030.122188.638103791.57690-0.7928011.6708010.33140HepG2HNRNPK
SUMO1ENSG00000116030.122998.165103611.71040-0.268605.756304.81490HepG2HNRNPL
SUMO1ENSG00000116030.122349.904503209.80790-0.449901.967901.42900HepG2HNRNPLL
SUMO1ENSG00000116030.122102.350902938.93740-0.483302.150301.50700HepG2IGF2BP1
SUMO1ENSG00000116030.122728.472503807.44020-0.480704.191503.37570HepG2IGF2BP2
SUMO1ENSG00000116030.122885.521303829.31220-0.408302.634501.65920HepG2KHSRP
SUMO1ENSG00000116030.121836.491702085.97800-0.183802.236201.31750HepG2KIF1C
SUMO1ENSG00000116030.122696.560104038.57220-0.582706.583505.58350HepG2MAGOH
SUMO1ENSG00000116030.123303.265404061.32530-0.298101.891501.36460HepG2MATR3
SUMO1ENSG00000116030.122396.852904157.11390-0.794409.459008.32830HepG2NCBP2
SUMO1ENSG00000116030.123089.352103931.44470-0.347805.102804.07200HepG2NOL12
SUMO1ENSG00000116030.122312.483903702.74000-0.679106.599905.49260HepG2PABPC4
SUMO1ENSG00000116030.123053.684503618.57670-0.244903.598002.92520HepG2PCBP1
SUMO1ENSG00000116030.121869.785302195.58290-0.231702.060301.41610HepG2PPIL4
SUMO1ENSG00000116030.122652.746203681.99950-0.4730011.0219010.07090HepG2PTBP1
SUMO1ENSG00000116030.123164.761403983.66580-0.332008.947508.01060HepG2PUM1
SUMO1ENSG00000116030.122054.176402324.26550-0.178202.010301.46660HepG2PUS1
SUMO1ENSG00000116030.123200.362003987.77650-0.317304.348103.59040HepG2QKI
SUMO1ENSG00000116030.123979.132903353.490500.246702.569701.74100HepG2RBM15
SUMO1ENSG00000116030.121969.372403699.48300-0.9096030.9113029.54730HepG2RBM22
SUMO1ENSG00000116030.123100.053304097.74310-0.402508.680307.81990HepG2NELFE
SUMO1ENSG00000116030.122902.839903816.43420-0.394808.490407.49980HepG2RECQL
SUMO1ENSG00000116030.121487.315601900.84710-0.353903.490302.80840HepG2RPS19
SUMO1ENSG00000116030.121833.143102192.23530-0.258101.859801.31470HepG2SAFB2
SUMO1ENSG00000116030.121156.450201907.73580-0.722209.293707.59760HepG2SERBP1
SUMO1ENSG00000116030.123148.465703833.50410-0.284004.752204.00870HepG2SF3B4
SUMO1ENSG00000116030.122990.066803598.13470-0.267105.410104.48470HepG2SLBP
SUMO1ENSG00000116030.124856.420304178.438900.216803.579803.03220HepG2SRFBP1
SUMO1ENSG00000116030.124619.441804001.320800.207102.940902.45710HepG2SRSF1
SUMO1ENSG00000116030.122128.960003128.09730-0.555107.115706.02800HepG2TARDBP
SUMO1ENSG00000116030.122695.236703304.74410-0.294103.121602.23870HepG2TIA1
SUMO1ENSG00000116030.121940.462402413.28080-0.314602.446301.90910HepG2TRIM56
SUMO1ENSG00000116030.122813.868402149.655900.388307.168206.31820K562AGGF1
SUMO1ENSG00000116030.122939.931402362.082300.315602.825701.83050K562AKAP8
SUMO1ENSG00000116030.122151.014602613.69020-0.281102.255301.71690K562AQR
SUMO1ENSG00000116030.121099.857101330.54360-0.274702.876201.89770K562BCLAF1
SUMO1ENSG00000116030.122134.245903240.74800-0.602603.841402.55150K562CNOT7
SUMO1ENSG00000116030.122015.125002520.00460-0.322604.324902.92200K562CPEB4
SUMO1ENSG00000116030.121287.456301936.39370-0.588802.383701.65080K562CPSF6
SUMO1ENSG00000116030.122199.172902607.24370-0.245603.078702.39570K562DDX47
SUMO1ENSG00000116030.122906.122402407.055100.271703.342102.36870K562DKC1
SUMO1ENSG00000116030.12812.935101044.66660-0.361802.286501.45600K562EFTUD2
SUMO1ENSG00000116030.121018.439401434.02170-0.493706.292605.10990K562EIF3G
SUMO1ENSG00000116030.12968.293401251.64690-0.370303.048302.18830K562EIF4A3
SUMO1ENSG00000116030.121978.300401486.464800.412302.580901.90290K562G3BP2
SUMO1ENSG00000116030.121418.396401737.17310-0.292503.109901.89720K562GLRX3
SUMO1ENSG00000116030.121840.223602524.12500-0.455903.908603.01420K562GRSF1
SUMO1ENSG00000116030.12621.059901304.92630-1.0712018.4664017.00360K562HNRNPC
SUMO1ENSG00000116030.12864.898401165.14230-0.429903.552202.24820K562HNRNPF
SUMO1ENSG00000116030.123093.479202373.858000.381903.645302.68110K562KIF1C
SUMO1ENSG00000116030.121504.700901937.76080-0.364903.723702.64090K562MATR3
SUMO1ENSG00000116030.123421.528002659.312800.363503.920002.80690K562MBNL1
SUMO1ENSG00000116030.121205.557801804.68210-0.582002.479501.65470K562METAP2
SUMO1ENSG00000116030.12846.109801826.40330-1.1101032.3755030.12830K562MTPAP
SUMO1ENSG00000116030.122677.756301863.980800.522503.476502.46260K562NAA15
SUMO1ENSG00000116030.121559.602402029.34150-0.379808.309707.11470K562NSUN2
SUMO1ENSG00000116030.121244.493701560.59570-0.326502.142901.40960K562PCBP3
SUMO1ENSG00000116030.121277.160801016.578600.329102.320601.63160K562PRPF8
SUMO1ENSG00000116030.12873.096001169.95900-0.422203.580102.53320K562PSIP1
SUMO1ENSG00000116030.121456.494001886.42180-0.373204.001303.21710K562PTBP1
SUMO1ENSG00000116030.123224.807002218.404300.539606.391505.60550K562PUS1
SUMO1ENSG00000116030.122783.647902161.406400.364905.027904.25000K562RBM15
SUMO1ENSG00000116030.121406.670001809.00360-0.362903.185602.27780K562RBM22
SUMO1ENSG00000116030.12857.972601067.22350-0.314902.397301.47940K562RCC2
SUMO1ENSG00000116030.12762.820901011.72140-0.407403.185702.06670K562SRFBP1
SUMO1ENSG00000116030.121785.422302051.47320-0.200402.406101.52540K562SRPK2
SUMO1ENSG00000116030.121231.622701871.67010-0.603807.062105.87950K562TARDBP
SUMO1ENSG00000116030.121395.735101805.41970-0.371303.877602.88670K562TIA1
SUMO1ENSG00000116030.12892.307401195.28120-0.421703.712202.58560K562TRIM56
SUMO1ENSG00000116030.121731.719302151.75030-0.313304.759303.84320K562UPF1
SUMO1ENSG00000116030.121208.970401898.32470-0.650907.165905.28470K562UTP3
SUMO1ENSG00000116030.121545.988501841.19040-0.252102.066901.31180K562WDR3
SUMO1ENSG00000116030.122397.224802944.42920-0.296602.627401.79040K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for SUMO1 is not available on ENCORE database.





2 RBPs can affect the splicing of SUMO1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SESUMO1ENSG00000116030.12chr2-2030847862030848692030790792030791572031031622031032990.258000.001450.01671includedK562AQR
SESUMO1ENSG00000116030.12chr2-203075457203075506203071592203072044203079079203079212-0.072000.000010.00017excludedK562AQR
A3SSSUMO1ENSG00000116030.12chr2-2030719752030721902030719752030720442030754572030756590.079000.000000.00000longerK562AQR
A3SSSUMO1ENSG00000116030.12chr2-203079079203079212203079079203079152203084754203084869-0.057000.000270.00215shorterK562AQR
MXESUMO1ENSG00000116030.12chr2-2030754572030755292030847862030848292030714902030720442031031622031033220.126000.001260.044141includedHepG2SUPV3L1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for SUMO1 is not avaliable on ENCORE database.