SSSCA1

General Information

Gene Name       : SSSCA1
Gene ID             : ENSG00000173465.7
Essential Gene : No

Functions

Localization

Domains (AlphaFold: SSSCA1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878SSSCA1ENSG00000173465.70.785.373.08ENCSR000AEF
HepG2SSSCA1ENSG00000173465.739.734.8622.29ENCSR985KAT
K562SSSCA1ENSG00000173465.755.8211.1433.48ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for SSSCA1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • SSSCA1 RNA is bound by 7 proteins.  







eCLIP assay for SSSCA1 is not avaliable on ENCORE database.





7 proteins are bound to SSSCA1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr116534007865340231+3'-UTR,5'-UTR,CDS,intron-Distal4.658216.52213HepG2UPF1
chr116534009565340171+3'-UTR,5'-UTR,CDS,intron-Distal4.321663.12843K562PRPF8
chr116534008765340135+3'-UTR,5'-UTR,intron-Distal4.011104.10564HepG2CSTF2T
chr116534003765340149+3'-UTR,5'-UTR,CDS,intron-Distal3.817534.77128HepG2RBFOX2
chr116533915365339213+3'-UTR,CDS,intron-Distal4.629828.74631K562PABPC4
chr116534001865340102+3'-UTR,5'-UTR,intron-Distal4.030454.11089HepG2XRN2
chr116534007865340134+3'-UTR,5'-UTR,intron-Distal3.819313.17740K562CSTF2T
chr116534126765341309+3'-UTR4.199433.87930K562UPF1
chr116534128465341340+3'-UTR4.069763.94684HepG2CSTF2T
chr116534046865340537+intron-Distal,intron-Proximal3.936823.70058K562CSTF2T
chr116534044165340530+intron-Distal,intron-Proximal3.386284.25955HepG2RBFOX2
chr116533954565339687+intron-Distal4.3575110.72130K562UPF1
chr116533959365339675+intron-Distal4.462635.05197K562HNRNPK
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for SSSCA1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for SSSCA1 is not available on ENCORE database.

  • 94 RBPs can affect the levels of SSSCA1.  








The Knockdown/knockout RNA-Seq assay for SSSCA1 is not available on ENCORE database.





94 RBPs can affect the gene expression of SSSCA1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
SSSCA1ENSG00000173465.3237.71770173.105600.457502.279501.71770HepG2ACO1
SSSCA1ENSG00000173465.3234.49080173.919400.431001.988801.32430HepG2AKAP8L
SSSCA1ENSG00000173465.3210.15940143.606200.549302.222501.68070HepG2BOP1
SSSCA1ENSG00000173465.3114.7455053.556801.099202.941402.15140HepG2CNOT7
SSSCA1ENSG00000173465.381.8302045.913400.833602.271301.35100HepG2YBX3
SSSCA1ENSG00000173465.3138.0335085.288700.694502.702602.06590HepG2CELF1
SSSCA1ENSG00000173465.3251.1852078.146101.684403.353502.51250HepG2DDX55
SSSCA1ENSG00000173465.3232.70010138.673300.746703.180302.52270HepG2DDX6
SSSCA1ENSG00000173465.3106.7399045.072101.243702.857602.14620HepG2DNAJC21
SSSCA1ENSG00000173465.3151.5476044.690801.761606.919105.95300HepG2DNAJC2
SSSCA1ENSG00000173465.391.27200147.47340-0.692202.477501.73340HepG2FUBP3
SSSCA1ENSG00000173465.3250.26400148.628300.751603.247302.49970HepG2FXR1
SSSCA1ENSG00000173465.3129.7219045.396501.514706.944804.71910HepG2HNRNPA0
SSSCA1ENSG00000173465.3104.1633044.318901.232803.521001.93740HepG2HNRNPAB
SSSCA1ENSG00000173465.3215.59530139.717200.625702.209301.57990HepG2HNRNPK
SSSCA1ENSG00000173465.3197.8204083.537601.243609.252708.08880HepG2HNRNPL
SSSCA1ENSG00000173465.390.84750142.63710-0.650801.974201.43420HepG2HNRNPLL
SSSCA1ENSG00000173465.3113.0957050.285301.169202.554401.97180HepG2HNRNPU
SSSCA1ENSG00000173465.384.0435051.363800.710301.989301.35490HepG2ILF2
SSSCA1ENSG00000173465.3126.8158051.141501.310102.603801.45870HepG2KHDRBS1
SSSCA1ENSG00000173465.3227.10620148.680900.611002.024601.45990HepG2MAGOH
SSSCA1ENSG00000173465.3237.42310149.488000.667302.361401.77530HepG2MATR3
SSSCA1ENSG00000173465.377.67500145.44510-0.905002.507201.58790HepG2MTPAP
SSSCA1ENSG00000173465.3277.67210152.989000.859904.130403.36180HepG2NCBP2
SSSCA1ENSG00000173465.3180.9514090.935900.992605.656604.57370HepG2NOL12
SSSCA1ENSG00000173465.346.24730126.46630-1.451305.619104.57270HepG2NSUN2
SSSCA1ENSG00000173465.3122.6057048.985201.323504.788703.59700HepG2PABPC1
SSSCA1ENSG00000173465.387.3354049.766900.811302.344001.55740HepG2PARN
SSSCA1ENSG00000173465.3241.93330157.417900.619903.555602.88630HepG2PCBP1
SSSCA1ENSG00000173465.3142.8912044.849501.6717010.695109.29640HepG2PPIL4
SSSCA1ENSG00000173465.3188.4865086.806201.118506.363305.50850HepG2PUF60
SSSCA1ENSG00000173465.3270.2638092.148601.552204.823404.08530HepG2PUM1
SSSCA1ENSG00000173465.3143.1056092.081300.636002.208701.60630HepG2PUM2
SSSCA1ENSG00000173465.3395.11690232.456200.765203.333202.77950HepG2RBM22
SSSCA1ENSG00000173465.3182.0184065.731801.469302.675401.69840HepG2RBM27
SSSCA1ENSG00000173465.3107.8022051.762201.058303.427701.72840HepG2RBM47
SSSCA1ENSG00000173465.3146.6560091.182200.685502.390401.81440HepG2RPS19
SSSCA1ENSG00000173465.3179.7899060.596301.568902.746201.94800HepG2RPS2
SSSCA1ENSG00000173465.3125.8486053.884201.223704.719903.67540HepG2RPS3A
SSSCA1ENSG00000173465.3192.5874061.883501.637804.435203.05990HepG2RPS5
SSSCA1ENSG00000173465.3115.4188044.778001.365906.536105.60850HepG2SAFB2
SSSCA1ENSG00000173465.3353.13250143.967101.2944010.110908.75930HepG2SF3A3
SSSCA1ENSG00000173465.3154.5985083.233500.893204.435503.57900HepG2SLBP
SSSCA1ENSG00000173465.3151.1892052.213201.533809.756108.66510HepG2SMN1
SSSCA1ENSG00000173465.3146.4496048.625401.590505.943904.49780HepG2SMNDC1
SSSCA1ENSG00000173465.399.07330174.06780-0.813103.592303.07040HepG2SRSF1
SSSCA1ENSG00000173465.3213.8209085.708501.3188010.272109.16880HepG2SRSF5
SSSCA1ENSG00000173465.3143.4861046.909201.612909.009306.92930HepG2STIP1
SSSCA1ENSG00000173465.3286.1264097.474201.5535017.1754015.83750HepG2SUCLG1
SSSCA1ENSG00000173465.348.80870156.47580-1.6807010.340709.36670HepG2TAF15
SSSCA1ENSG00000173465.3150.4485049.299701.6095010.771909.76870HepG2TRIM56
SSSCA1ENSG00000173465.3215.4083084.805901.344709.352807.56370HepG2TUFM
SSSCA1ENSG00000173465.3217.1030089.765701.274003.485602.54120HepG2UBE2L3
SSSCA1ENSG00000173465.3106.5182045.903301.214302.144301.47600HepG2UCHL5
SSSCA1ENSG00000173465.3251.59420123.266301.029207.789206.86570HepG2UTP3
SSSCA1ENSG00000173465.3118.9088048.270001.300605.407803.87070HepG2XPO5
SSSCA1ENSG00000173465.3118.2175052.189701.179503.393702.21750HepG2XRCC6
SSSCA1ENSG00000173465.3218.66360140.419700.638903.680003.07360HepG2ZNF622
SSSCA1ENSG00000173465.3428.79890297.579200.526903.126702.43140K562AKAP8L
SSSCA1ENSG00000173465.3365.51680196.462800.895602.946301.58880K562BCCIP
SSSCA1ENSG00000173465.3343.92660189.915400.856605.909604.48780K562BCLAF1
SSSCA1ENSG00000173465.3163.8059083.365600.974402.592701.35650K562CIRBP
SSSCA1ENSG00000173465.3328.28340144.079301.188007.588905.70990K562CSTF2
SSSCA1ENSG00000173465.3629.91240791.98820-0.330302.267901.38490K562CELF1
SSSCA1ENSG00000173465.3336.10130166.422401.013903.128301.71180K562DDX27
SSSCA1ENSG00000173465.3710.06510444.570200.675408.918207.83010K562DDX47
SSSCA1ENSG00000173465.3236.63990142.203800.734602.642501.75340K562EFTUD2
SSSCA1ENSG00000173465.3335.18630211.667600.663102.661701.67970K562EIF3A
SSSCA1ENSG00000173465.3142.9678056.569401.337507.259905.98090K562EIF3G
SSSCA1ENSG00000173465.3101.38730201.38130-0.990105.077003.47330K562FKBP4
SSSCA1ENSG00000173465.3131.38080197.10700-0.585202.296101.51470K562FMR1
SSSCA1ENSG00000173465.3469.39850286.105500.714202.535501.95060K562FXR1
SSSCA1ENSG00000173465.38.2954041.84620-2.334704.849003.85190K562G3BP2
SSSCA1ENSG00000173465.3309.04970231.895100.414301.823201.32630K562HNRNPC
SSSCA1ENSG00000173465.3282.8595077.910301.860103.077501.97460K562IGF2BP2
SSSCA1ENSG00000173465.3167.0744079.193101.076905.754203.92920K562IGF2BP3
SSSCA1ENSG00000173465.389.51880157.93130-0.819002.240301.41010K562KRR1
SSSCA1ENSG00000173465.3297.1617081.751501.8618021.4639018.95200K562MAGOH
SSSCA1ENSG00000173465.3229.4907081.566001.492306.208004.74710K562MATR3
SSSCA1ENSG00000173465.3286.96210140.369301.031505.525303.54830K562NONO
SSSCA1ENSG00000173465.3160.9017079.972801.008505.276403.34710K562PCBP1
SSSCA1ENSG00000173465.3139.5188072.715000.940003.739002.60300K562PCBP2
SSSCA1ENSG00000173465.3400.14970307.961700.377701.982801.30300K562POLR2G
SSSCA1ENSG00000173465.3514.59880315.165700.707205.935504.65940K562PPIG
SSSCA1ENSG00000173465.3307.28390138.383301.150803.529102.68120K562PRPF8
SSSCA1ENSG00000173465.3304.7820079.436401.9398012.3510011.00050K562PTBP1
SSSCA1ENSG00000173465.3526.98140747.47940-0.504305.174403.68120K562PUM1
SSSCA1ENSG00000173465.3261.5792076.099401.7812017.8351015.46840K562RBM22
SSSCA1ENSG00000173465.3201.6540074.236401.441602.955701.50920K562RBM34
SSSCA1ENSG00000173465.3281.40260189.723100.568602.903701.88770K562RCC2
SSSCA1ENSG00000173465.3164.0085080.099001.033804.373602.96480K562NELFE
SSSCA1ENSG00000173465.3314.38730140.884201.157903.098502.23270K562RPS19
SSSCA1ENSG00000173465.3202.4310093.444301.115205.153403.72630K562RPS3
SSSCA1ENSG00000173465.3536.00400274.461400.9655010.418108.39580K562SAFB
SSSCA1ENSG00000173465.388.4860043.478601.025003.382502.43530K562SF3B4
SSSCA1ENSG00000173465.3286.72100179.850300.672803.628502.40530K562SRFBP1
SSSCA1ENSG00000173465.3326.5096077.888602.0675012.7171011.19830K562SRSF1
SSSCA1ENSG00000173465.3175.7334090.213800.961904.194502.85650K562SRSF4
SSSCA1ENSG00000173465.3198.8210073.595801.4337010.236308.06450K562SRSF5
SSSCA1ENSG00000173465.3252.66140364.23140-0.527702.728901.38140K562SSRP1
SSSCA1ENSG00000173465.311.3281041.07420-1.858303.412101.71600K562TAF15
SSSCA1ENSG00000173465.3251.3202078.797101.673205.423504.41630K562TARDBP
SSSCA1ENSG00000173465.3234.6756076.016901.626205.989904.71580K562TIA1
SSSCA1ENSG00000173465.3212.5755074.669201.509303.187602.00270K562TRA2A
SSSCA1ENSG00000173465.3551.53570792.28020-0.522602.729001.34030K562UBE2L3
SSSCA1ENSG00000173465.3274.25120144.428300.925003.430502.03570K562XRN2
SSSCA1ENSG00000173465.3162.50780308.51580-0.924803.289701.51270K562YTHDC2
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for SSSCA1 is not available on ENCORE database.





7 RBPs can affect the splicing of SSSCA1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SESSSCA1ENSG00000173465.3chr11+653388616533925065338356653384416533991365340363-0.214000.000220.06046excludedK562WDR43
SESSSCA1ENSG00000173465.3chr11+653388616533925065338356653384416533991365340363-0.114000.000470.00639excludedK562AQR
SESSSCA1ENSG00000173465.3chr11+653388616533925065338356653384416533991365340363-0.395000.000310.02487excludedHepG2SRSF9
RISSSCA1ENSG00000173465.3chr11+6533795765338121653379576533798165338074653381210.296000.000030.01430includedK562LARP7
RISSSCA1ENSG00000173465.3chr11+653379576533812165337957653379816533807465338121-0.106000.001110.04680excludedK562SUPV3L1
RISSSCA1ENSG00000173465.3chr11+6533795765338121653379576533798165338074653381210.111000.000290.00436includedK562RBM15
RISSSCA1ENSG00000173465.3chr11+6533795765338121653379576533798165338074653381210.543000.000000.00000includedHepG2RBM22
RISSSCA1ENSG00000173465.3chr11+6533795765338121653379576533798165338074653381210.351000.000000.00000includedK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for SSSCA1 is not avaliable on ENCORE database.