SSSCA1

General Information

Gene Name : SSSCA1
Gene ID : ENSG00000173465.7
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: SSSCA1)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	SSSCA1	ENSG00000173465.7	0.78	5.37	3.08	ENCSR000AEF
HepG2	SSSCA1	ENSG00000173465.7	39.73	4.86	22.29	ENCSR985KAT
K562	SSSCA1	ENSG00000173465.7	55.82	11.14	33.48	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for SSSCA1 is not avaliable on ENCORE database.

Proteins bound to RNA

SSSCA1 RNA is bound by 7 proteins.

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eCLIP assay for SSSCA1 is not avaliable on ENCORE database.

7 proteins are bound to SSSCA1 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr11	65339545	65339687	+	intron-Distal	4.35751	10.72130	K562	UPF1
chr11	65339153	65339213	+	3'-UTR,CDS,intron-Distal	4.62982	8.74631	K562	PABPC4
chr11	65340078	65340231	+	3'-UTR,5'-UTR,CDS,intron-Distal	4.65821	6.52213	HepG2	UPF1
chr11	65339593	65339675	+	intron-Distal	4.46263	5.05197	K562	HNRNPK
chr11	65340037	65340149	+	3'-UTR,5'-UTR,CDS,intron-Distal	3.81753	4.77128	HepG2	RBFOX2
chr11	65340441	65340530	+	intron-Distal,intron-Proximal	3.38628	4.25955	HepG2	RBFOX2
chr11	65340018	65340102	+	3'-UTR,5'-UTR,intron-Distal	4.03045	4.11089	HepG2	XRN2
chr11	65340087	65340135	+	3'-UTR,5'-UTR,intron-Distal	4.01110	4.10564	HepG2	CSTF2T
chr11	65341284	65341340	+	3'-UTR	4.06976	3.94684	HepG2	CSTF2T
chr11	65341267	65341309	+	3'-UTR	4.19943	3.87930	K562	UPF1
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 13 entries

eCLIP assay for SSSCA1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for SSSCA1 is not available on ENCORE database.
94 RBPs can affect the levels of SSSCA1.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for SSSCA1 is not available on ENCORE database.

94 RBPs can affect the gene expression of SSSCA1 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
SSSCA1	ENSG00000173465.3	297.16170	81.75150	1.86180	21.46390	18.95200	K562	MAGOH
SSSCA1	ENSG00000173465.3	286.12640	97.47420	1.55350	17.17540	15.83750	HepG2	SUCLG1
SSSCA1	ENSG00000173465.3	261.57920	76.09940	1.78120	17.83510	15.46840	K562	RBM22
SSSCA1	ENSG00000173465.3	326.50960	77.88860	2.06750	12.71710	11.19830	K562	SRSF1
SSSCA1	ENSG00000173465.3	304.78200	79.43640	1.93980	12.35100	11.00050	K562	PTBP1
SSSCA1	ENSG00000173465.3	150.44850	49.29970	1.60950	10.77190	9.76870	HepG2	TRIM56
SSSCA1	ENSG00000173465.3	48.80870	156.47580	-1.68070	10.34070	9.36670	HepG2	TAF15
SSSCA1	ENSG00000173465.3	142.89120	44.84950	1.67170	10.69510	9.29640	HepG2	PPIL4
SSSCA1	ENSG00000173465.3	213.82090	85.70850	1.31880	10.27210	9.16880	HepG2	SRSF5
SSSCA1	ENSG00000173465.3	353.13250	143.96710	1.29440	10.11090	8.75930	HepG2	SF3A3
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 107 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for SSSCA1 is not available on ENCORE database.

7 RBPs can affect the splicing of SSSCA1 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
RI	SSSCA1	ENSG00000173465.3	chr11	+	65337957	65338121	65337957	65337981	65338074	65338121	0.54300	0.00000	0.00000	included	HepG2	RBM22
RI	SSSCA1	ENSG00000173465.3	chr11	+	65337957	65338121	65337957	65337981	65338074	65338121	0.35100	0.00000	0.00000	included	K562	AQR
RI	SSSCA1	ENSG00000173465.3	chr11	+	65337957	65338121	65337957	65337981	65338074	65338121	0.29600	0.00003	0.01430	included	K562	LARP7
SE	SSSCA1	ENSG00000173465.3	chr11	+	65338861	65339250	65338356	65338441	65339913	65340363	-0.21400	0.00022	0.06046	excluded	K562	WDR43
RI	SSSCA1	ENSG00000173465.3	chr11	+	65337957	65338121	65337957	65337981	65338074	65338121	0.11100	0.00029	0.00436	included	K562	RBM15
SE	SSSCA1	ENSG00000173465.3	chr11	+	65338861	65339250	65338356	65338441	65339913	65340363	-0.39500	0.00031	0.02487	excluded	HepG2	SRSF9
SE	SSSCA1	ENSG00000173465.3	chr11	+	65338861	65339250	65338356	65338441	65339913	65340363	-0.11400	0.00047	0.00639	excluded	K562	AQR
RI	SSSCA1	ENSG00000173465.3	chr11	+	65337957	65338121	65337957	65337981	65338074	65338121	-0.10600	0.00111	0.04680	excluded	K562	SUPV3L1

Showing 1 to 8 of 8 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

SSSCA1

General Information

Functions

Localization

Domains (AlphaFold: SSSCA1)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for SSSCA1 is not avaliable on ENCORE database.

7 proteins are bound to SSSCA1 RNA:

eCLIP assay for SSSCA1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for SSSCA1 is not available on ENCORE database.

94 RBPs can affect the gene expression of SSSCA1 :

The Knockdown/knockout RNA-Seq assay for SSSCA1 is not available on ENCORE database.

7 RBPs can affect the splicing of SSSCA1 :

The Knockdown/knockout RNA-Seq assay for SSSCA1 is not avaliable on ENCORE database.