SRGAP2B

General Information

Gene Name       : SRGAP2B
Gene ID             : ENSG00000196369.11
Essential Gene : No

Functions

Localization

Domains (AlphaFold: SRGAP2B)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878SRGAP2BENSG00000196369.111.592.011.80ENCSR000AEF
HepG2SRGAP2BENSG00000196369.1113.9513.4913.72ENCSR985KAT
K562SRGAP2BENSG00000196369.112.343.102.72ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for SRGAP2B is not avaliable on ENCORE database.



Proteins bound to RNA
  • SRGAP2B RNA is bound by 10 proteins.  







eCLIP assay for SRGAP2B is not avaliable on ENCORE database.





10 proteins are bound to SRGAP2B RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr1144056411144056426+intron-Distal8.29890400.00000HepG2DKC1
chr1144005713144005779+intron-Distal4.576483.27829HepG2MATR3
chr1144056426144056467+intron-Distal4.5220120.33454HepG2NOLC1
chr1144010472144010542+intron-Distal3.981066.77443HepG2PTBP1
chr1144005722144005782+intron-Distal4.135806.48743K562PTBP1
chr1144009979144010057+intron-Distal3.231863.71972K562TARDBP
chr1144056376144056426+intron-Distal4.2340731.96585HepG2NOLC1
chr1144056445144056454+intron-Distal8.85653400.00000HepG2DKC1
chr1144056459144056469+intron-Distal9.32141263.04294HepG2DKC1
chr1144005441144005501+intron-Distal4.272244.86548HepG2SUGP2
chr1144056378144056426+intron-Distal3.139609.07529K562PTBP1
chr1144010659144010721+intron-Distal4.098593.74583HepG2PTBP1
chr1144056457144056467+intron-Distal4.775855.39854K562PTBP1
chr1144056379144056470+intron-Distal3.1612710.48640K562AATF
chr1144010544144010588+intron-Distal4.669354.90095K562PTBP1
chr1144005517144005598+intron-Distal4.500483.62238HepG2MATR3
chr1144056380144056392+intron-Distal8.53967400.00000HepG2DKC1
chr1144014104144014201+intron-Distal,intron-Proximal3.504785.19069HepG2TIAL1
chr1144056426144056445+intron-Distal8.27653400.00000HepG2DKC1
chr1144015990144016229+intron-Distal4.550465.32928K562MATR3
chr1144005707144005782+intron-Distal3.273444.59863HepG2PTBP1
chr1144014098144014215+intron-Distal,intron-Proximal3.364114.48980K562PRPF8
chr1144061795144061865+intron-Distal4.533895.97091K562TARDBP
chr1144005638144005779+intron-Distal4.041033.47525K562MATR3
chr1144016166144016198+intron-Distal3.728783.16028HepG2SUGP2
chr1144010466144010526+intron-Distal5.356088.50063K562PTBP1
chr1144016065144016103+intron-Distal4.022013.62238HepG2MATR3
chr1144005644144005700+intron-Distal4.188583.41738HepG2PTBP1
chr1143916260143916309+intron-Proximal3.696785.35682HepG2GRWD1
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for SRGAP2B is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for SRGAP2B is not available on ENCORE database.

  • 51 RBPs can affect the levels of SRGAP2B.  








The Knockdown/knockout RNA-Seq assay for SRGAP2B is not available on ENCORE database.





51 RBPs can affect the gene expression of SRGAP2B :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
SRGAP2BENSG00000196369.6275.07230468.14120-0.767105.058303.82390HepG2ABCF1
SRGAP2BENSG00000196369.6426.34000296.703800.522904.356803.62690HepG2ACO1
SRGAP2BENSG00000196369.6217.39420328.80600-0.596902.633502.11390HepG2AKAP1
SRGAP2BENSG00000196369.6361.54950483.19810-0.418403.073902.35570HepG2AUH
SRGAP2BENSG00000196369.687.48880202.67560-1.212006.570805.09430HepG2BCCIP
SRGAP2BENSG00000196369.6201.53280346.45310-0.781603.784903.09650HepG2BOP1
SRGAP2BENSG00000196369.6134.83450258.47790-0.938905.326104.27110HepG2CIRBP
SRGAP2BENSG00000196369.6229.47030296.60770-0.370201.960501.38840HepG2CKAP4
SRGAP2BENSG00000196369.6124.78040213.88450-0.777403.833503.04780HepG2DDX21
SRGAP2BENSG00000196369.6144.88710209.49970-0.532002.105901.31980HepG2DDX24
SRGAP2BENSG00000196369.6182.27450314.98090-0.789204.513703.72950HepG2DDX3X
SRGAP2BENSG00000196369.6194.85830283.85700-0.542703.057702.34990HepG2DKC1
SRGAP2BENSG00000196369.6147.62640260.11110-0.817204.150603.43280HepG2EIF2S1
SRGAP2BENSG00000196369.6152.56690287.46420-0.913905.400104.50890HepG2EIF4A3
SRGAP2BENSG00000196369.6418.65880554.78600-0.406202.873202.26230HepG2ETF1
SRGAP2BENSG00000196369.6202.20570285.59880-0.498202.162601.38040HepG2G3BP2
SRGAP2BENSG00000196369.6230.50660344.12970-0.578102.208301.63970HepG2HNRNPLL
SRGAP2BENSG00000196369.6351.33890237.901300.562403.765703.14920HepG2PTBP1
SRGAP2BENSG00000196369.6339.75570463.69640-0.448702.900702.37330HepG2RBM22
SRGAP2BENSG00000196369.6213.21140411.11660-0.947303.444102.68890HepG2SF3A3
SRGAP2BENSG00000196369.6187.21370340.64380-0.863604.140903.29450HepG2SF3B1
SRGAP2BENSG00000196369.6337.18530250.011100.431402.734802.03680HepG2SLBP
SRGAP2BENSG00000196369.6381.81070523.72430-0.456003.917203.35120HepG2SRFBP1
SRGAP2BENSG00000196369.6185.06180454.71030-1.2969019.2417018.15160HepG2SSB
SRGAP2BENSG00000196369.6469.33870292.774500.680707.011606.10070HepG2SUCLG1
SRGAP2BENSG00000196369.6188.83920319.20540-0.757303.920302.81330HepG2SUPT6H
SRGAP2BENSG00000196369.6292.49650404.37960-0.467302.355201.77100HepG2U2AF1
SRGAP2BENSG00000196369.649.20610117.16850-1.251705.411104.34280HepG2UCHL5
SRGAP2BENSG00000196369.6276.65080364.59880-0.398202.471001.80490HepG2UPF1
SRGAP2BENSG00000196369.659.33180181.59480-1.613808.416106.61970HepG2UPF2
SRGAP2BENSG00000196369.6253.51300352.00390-0.473502.914402.30360HepG2UTP3
SRGAP2BENSG00000196369.682.32310195.27000-1.246106.959305.82160HepG2XRN2
SRGAP2BENSG00000196369.6213.25690400.98710-0.911009.893209.01950HepG2ZNF622
SRGAP2BENSG00000196369.6300.18520201.658900.573802.602101.34920HepG2ZRANB2
SRGAP2BENSG00000196369.6394.92390593.83400-0.588502.352201.51670K562ATP5C1
SRGAP2BENSG00000196369.6413.49980649.87730-0.652302.902801.69250K562CCDC124
SRGAP2BENSG00000196369.6325.44750222.279100.550003.431602.25460K562DDX3X
SRGAP2BENSG00000196369.6262.19660182.649900.521502.687901.97700K562EIF2S2
SRGAP2BENSG00000196369.6348.31970181.104000.943505.264804.07930K562FMR1
SRGAP2BENSG00000196369.6161.94510241.51800-0.576602.314001.75260K562FXR1
SRGAP2BENSG00000196369.6574.69820252.792901.184706.281604.18450K562HNRNPA2B1
SRGAP2BENSG00000196369.6393.02760287.872300.449102.223101.50680K562HSPD1
SRGAP2BENSG00000196369.6451.50220220.992501.030604.543203.18830K562PABPN1
SRGAP2BENSG00000196369.6384.24240254.309500.595303.261902.35800K562PCBP3
SRGAP2BENSG00000196369.6532.21310262.608201.019004.346302.36010K562PPP1R8
SRGAP2BENSG00000196369.6507.57240202.028601.329006.121004.11380K562SF1
SRGAP2BENSG00000196369.6286.68800161.633000.826704.112402.91060K562SF3B1
SRGAP2BENSG00000196369.6418.54450232.133700.850302.977901.68800K562SNRNP200
SRGAP2BENSG00000196369.6131.09320195.64740-0.577702.032201.32830K562SYNCRIP
SRGAP2BENSG00000196369.6169.46970236.88510-0.483202.043001.42870K562TARDBP
SRGAP2BENSG00000196369.6364.34220249.606900.545502.236801.45080K562WDR3
SRGAP2BENSG00000196369.6462.19850235.964600.969803.759101.71590K562XPO5
SRGAP2BENSG00000196369.6626.88610273.099701.198705.996603.15610K562YTHDC2
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for SRGAP2B is not available on ENCORE database.





1 RBPs can affect the splicing of SRGAP2B :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SESRGAP2BENSG00000196369.6chr1+144013900144014093143916241143916308144094361144094424-0.130000.008280.06990excludedK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for SRGAP2B is not avaliable on ENCORE database.