SNX17

General Information

Gene Name       : SNX17
Gene ID             : ENSG00000115234.10
Essential Gene : No

Functions

Localization

Domains (AlphaFold: SNX17)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878SNX17ENSG00000115234.1033.1342.2337.68ENCSR000AEF
HepG2SNX17ENSG00000115234.1070.1358.5264.33ENCSR985KAT
K562SNX17ENSG00000115234.1041.5929.7435.66ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for SNX17 is not avaliable on ENCORE database.



Proteins bound to RNA
  • SNX17 RNA is bound by 20 proteins.  







eCLIP assay for SNX17 is not avaliable on ENCORE database.





20 proteins are bound to SNX17 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr22759988427599938+3'-UTR3.400036.00615HepG2DDX55
chr22759968727599735+3'-UTR4.432623.24831HepG2TIA1
chr22759756227597635+3'-UTR,CDS,intron-Distal,intron-Proximal3.571448.34074HepG2PPIG
chr22759988627599940+3'-UTR5.8228412.66607HepG2LARP4
chr22759837327598391+3'-UTR,CDS3.705184.52024HepG2PPIG
chr22759975127599809+3'-UTR4.0691325.30535HepG2PCBP2
chr22759701027597081+3'-UTR,5'-UTR,CDS,intron-Proximal4.847436.45599K562PRPF8
chr22759968327599716+3'-UTR3.8785321.59184HepG2PCBP2
chr22759935227599418+3'-UTR,CDS,intron-Proximal3.458105.76569HepG2PRPF8
chr22759988027599938+3'-UTR4.1148110.12999K562PABPC4
chr22759981427599884+3'-UTR3.637247.24472HepG2DDX55
chr22759929427599365+3'-UTR,CDS,intron-Proximal6.2097010.24170HepG2SF3A3
chr22759947827599509+3'-UTR,CDS3.208604.51003HepG2PPIG
chr22759947427599515+3'-UTR,CDS3.088073.26789K562YBX3
chr22759727927597301+3'-UTR,CDS,intron-Proximal5.082037.65820K562LIN28B
chr22759755527597557+3'-UTR,CDS,intron-Distal,intron-Proximal5.211368.55117K562LIN28B
chr22759878827598832+3'-UTR,CDS3.091703.24162HepG2G3BP1
chr22759978327599813+3'-UTR4.9258311.30955K562PABPC4
chr22759761627597669+3'-UTR,CDS,intron-Distal,intron-Proximal4.2201315.51998HepG2PRPF8
chr22759801727598039+3'-UTR,CDS,intron-Proximal3.451736.46344HepG2PRPF8
chr22759755727597597+3'-UTR,CDS,intron-Distal5.387699.22045K562LIN28B
chr22759982227599869+3'-UTR4.108287.28182K562PABPC4
chr22759967627599745+3'-UTR3.4890322.24686HepG2LARP4
chr22759974527599821+3'-UTR4.0495713.87076HepG2LARP4
chr22759899627599049+3'-UTR,CDS3.012715.51671HepG2PPIG
chr22759973727599779+3'-UTR3.7618412.87392K562PABPC4
chr22759751527597575+3'-UTR,CDS,intron-Distal,intron-Proximal3.809373.67894HepG2AQR
chr22759928827599387+3'-UTR,CDS,intron-Proximal3.470947.63264HepG2EFTUD2
chr22759673727596799+3'-UTR,5'-UTR,CDS3.511429.69058HepG2PPIG
chr22759754927597625+3'-UTR,CDS,intron-Distal,intron-Proximal3.229767.97025HepG2BCLAF1
chr22759929227599383+3'-UTR,CDS,intron-Proximal3.828193.20886K562PRPF8
chr22759727427597339+3'-UTR,CDS,intron-Proximal4.861725.90930HepG2AQR
chr22759722027597285+3'-UTR,CDS3.213766.47139HepG2PPIG
chr22759968027599778+3'-UTR5.3712814.89904HepG2PCBP1
chr22759967827599775+3'-UTR5.9770823.30729K562PCBP1
chr22759971627599734+3'-UTR4.1545722.38454HepG2PCBP2
chr22759922527599295+3'-UTR,CDS,intron-Proximal3.270154.63846HepG2PRPF8
chr22759982127599875+3'-UTR3.341277.79183HepG2LARP4
chr22759973427599751+3'-UTR3.8745624.97910HepG2PCBP2
chr22759703127597084+3'-UTR,5'-UTR,CDS,intron-Proximal4.775007.56654HepG2PRPF8
chr22759420827594249+5'-UTR,CDS,intron-Distal,intron-Proximal4.170716.81564HepG2PRPF8
chr22759364927593690+5'-UTR,CDS,intron-Proximal3.3916510.61060HepG2PRPF8
chr22759350027593676+5'-UTR,CDS,intron-Proximal3.755429.73580K562DDX3X
chr22759413827594209+5'-UTR,CDS,intron-Distal3.710724.25624HepG2DDX3X
chr22759350227593603+5'-UTR4.2602025.33875HepG2DDX3X
chr22759579027595890+intron-Distal,intron-Proximal4.270358.42721HepG2QKI
chr22759445727594537+intron-Distal4.049866.08669HepG2RBFOX2
chr22759861627598675+intron-Proximal4.714108.08215HepG2EFTUD2
chr22759730027597315+intron-Proximal4.303688.63922HepG2PRPF8
chr22759942427599464+intron-Proximal4.388705.29549HepG2EFTUD2
chr22759369027593749+intron-Proximal4.2454016.31313HepG2PRPF8
chr22759369527593746+intron-Proximal4.658404.40230HepG2RBM22
chr22759912027599176+intron-Proximal4.052263.56713HepG2SF3B4
chr22759731727597341+intron-Proximal3.552198.11126HepG2PRPF8
chr22759858527598622+intron-Proximal4.900196.35567HepG2PRPF8
chr22759730527597365+intron-Proximal4.784595.26064K562AQR
chr22759829627598353+intron-Proximal4.557256.05374HepG2SF3B4
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for SNX17 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for SNX17 is not available on ENCORE database.

  • 72 RBPs can affect the levels of SNX17.  








The Knockdown/knockout RNA-Seq assay for SNX17 is not available on ENCORE database.





72 RBPs can affect the gene expression of SNX17 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
SNX17ENSG00000115234.61758.492801133.065800.634004.977903.75170HepG2ABCF1
SNX17ENSG00000115234.61583.974901389.774300.188601.855901.34000HepG2ACO1
SNX17ENSG00000115234.63808.472902975.490100.356002.452201.94830HepG2AKAP1
SNX17ENSG00000115234.61133.015801396.27970-0.301403.440402.59590HepG2AKAP8L
SNX17ENSG00000115234.61978.617302526.25010-0.352505.538504.62490HepG2AUH
SNX17ENSG00000115234.6778.845101280.73610-0.717607.771206.35720HepG2BCLAF1
SNX17ENSG00000115234.61695.171402339.01990-0.464504.379203.41790HepG2CIRBP
SNX17ENSG00000115234.61582.294101389.443200.187401.983701.40870HepG2CKAP4
SNX17ENSG00000115234.6348.55720519.44500-0.575603.833103.03640HepG2CPSF6
SNX17ENSG00000115234.61590.729301285.328800.307504.500003.46970HepG2DDX19B
SNX17ENSG00000115234.61650.310301267.843500.380303.390102.64460HepG2DDX21
SNX17ENSG00000115234.61638.646901329.629900.301403.626402.86930HepG2DKC1
SNX17ENSG00000115234.61145.65210870.168500.396702.771401.85080HepG2EEF2
SNX17ENSG00000115234.62473.742402900.40900-0.229602.964002.34530HepG2ETF1
SNX17ENSG00000115234.61927.772902434.55800-0.336702.297101.68770HepG2G3BP1
SNX17ENSG00000115234.6810.49500628.899600.365902.209001.41490HepG2GEMIN5
SNX17ENSG00000115234.61352.220702465.49030-0.8665014.7999013.30890HepG2HNRNPK
SNX17ENSG00000115234.6729.80020561.929400.377002.203301.63500HepG2HNRNPLL
SNX17ENSG00000115234.61554.102001156.793400.425804.545803.63760HepG2IGF2BP1
SNX17ENSG00000115234.61367.030302322.50740-0.764602.783001.79860HepG2IGF2BP3
SNX17ENSG00000115234.61611.992801124.645900.519303.756702.78680HepG2LARP4
SNX17ENSG00000115234.61864.410902406.44460-0.368202.762202.04100HepG2PABPC4
SNX17ENSG00000115234.6847.889001086.81640-0.358202.409501.61460HepG2PARN
SNX17ENSG00000115234.6667.26370930.51240-0.479805.869104.78700HepG2PRPF4
SNX17ENSG00000115234.62099.568702559.05910-0.285503.579402.97460HepG2PTBP1
SNX17ENSG00000115234.62337.635202039.233900.196903.113302.49360HepG2PUM1
SNX17ENSG00000115234.61755.290401415.571100.310204.433403.68900HepG2PUS1
SNX17ENSG00000115234.61719.549002771.76640-0.6888015.6748014.36420HepG2QKI
SNX17ENSG00000115234.62132.084702515.46470-0.238602.082701.49270HepG2RBM25
SNX17ENSG00000115234.62272.528502848.08160-0.325705.183404.48090HepG2NELFE
SNX17ENSG00000115234.62123.320502652.42960-0.321005.310904.49100HepG2RECQL
SNX17ENSG00000115234.61752.536701265.663800.469504.668703.81280HepG2RPLP0
SNX17ENSG00000115234.6406.48030556.19700-0.452402.755302.04980HepG2SF3B1
SNX17ENSG00000115234.61274.319702664.51470-1.0641031.8789030.26380HepG2SF3B4
SNX17ENSG00000115234.6911.48970618.867400.558502.978502.16670HepG2SNRNP70
SNX17ENSG00000115234.62209.237502738.08930-0.309605.345704.71190HepG2SRFBP1
SNX17ENSG00000115234.61962.947402781.09330-0.5026010.172809.39350HepG2SRSF1
SNX17ENSG00000115234.6431.40450598.47600-0.472302.360401.44460HepG2SRSF3
SNX17ENSG00000115234.61739.493802262.49590-0.379206.202605.43480HepG2SRSF9
SNX17ENSG00000115234.6417.93260971.65040-1.2172014.8781012.15050HepG2STIP1
SNX17ENSG00000115234.61459.154202499.52430-0.7765019.9751018.66660HepG2TAF15
SNX17ENSG00000115234.61878.519802296.96720-0.290102.503401.70610HepG2TIA1
SNX17ENSG00000115234.62283.256201876.801400.282702.709501.84560HepG2TUFM
SNX17ENSG00000115234.6933.211501305.22500-0.484002.853401.78020HepG2XRCC6
SNX17ENSG00000115234.61258.977801005.868500.323704.462103.81020HepG2ZNF622
SNX17ENSG00000115234.6365.58640735.16930-1.0079013.0483011.47500K562AKAP8L
SNX17ENSG00000115234.6744.567501471.09250-0.9824015.6368014.39640K562AQR
SNX17ENSG00000115234.6613.29740798.50290-0.380703.940402.78050K562BCLAF1
SNX17ENSG00000115234.6920.87970764.536200.268302.221801.62770K562DDX47
SNX17ENSG00000115234.61237.322001044.419300.244402.129301.48390K562EIF2S2
SNX17ENSG00000115234.6533.57630702.41320-0.396602.788201.96360K562EIF4A3
SNX17ENSG00000115234.61291.129501505.57950-0.221702.210201.36620K562EIF4G2
SNX17ENSG00000115234.6970.20000730.476300.409304.269803.54140K562FXR1
SNX17ENSG00000115234.6313.50110490.64160-0.646202.649201.96140K562G3BP2
SNX17ENSG00000115234.6445.60630615.60000-0.466204.060902.68700K562GLRX3
SNX17ENSG00000115234.6866.872701191.56170-0.459004.840503.43870K562HNRNPA1
SNX17ENSG00000115234.6353.85490566.30290-0.678405.974805.13110K562HNRNPC
SNX17ENSG00000115234.6268.80140505.79810-0.912008.874106.76410K562HNRNPF
SNX17ENSG00000115234.6431.86520618.62150-0.518504.558902.14130K562HNRNPH1
SNX17ENSG00000115234.6668.81800457.593200.547402.660501.74890K562HNRNPM
SNX17ENSG00000115234.6976.92580754.190500.373202.670001.88800K562HSPD1
SNX17ENSG00000115234.6393.77820548.65610-0.478503.276301.73480K562LARP7
SNX17ENSG00000115234.6513.88870747.87740-0.541303.903202.91490K562PCBP3
SNX17ENSG00000115234.6424.98950573.63230-0.432702.909202.08680K562POLR2G
SNX17ENSG00000115234.6892.28640631.551600.498504.182503.14610K562PPIG
SNX17ENSG00000115234.61233.017201642.67460-0.413903.735002.79030K562PUF60
SNX17ENSG00000115234.6377.03470247.986000.604302.944301.90910K562RPS3
SNX17ENSG00000115234.6265.43970510.43270-0.943308.854107.27570K562SF3B4
SNX17ENSG00000115234.6268.72410434.46350-0.693105.199003.43400K562SLBP
SNX17ENSG00000115234.6522.62780726.97240-0.476105.431804.17450K562SRPK2
SNX17ENSG00000115234.6489.02530652.91420-0.417003.401401.70830K562SRSF9
SNX17ENSG00000115234.6289.09700623.15120-1.108003.034601.31540K562STIP1
SNX17ENSG00000115234.6391.38560669.48090-0.774506.574204.96090K562SUPV3L1
SNX17ENSG00000115234.6276.64630481.64380-0.799903.871202.02340K562TAF15
SNX17ENSG00000115234.6341.89250511.65460-0.581604.060602.08590K562TBRG4
SNX17ENSG00000115234.6322.59280475.87430-0.560903.270602.06180K562U2AF1
SNX17ENSG00000115234.6499.18070652.46580-0.386302.768701.89070K562WDR3
SNX17ENSG00000115234.61311.570101657.36930-0.337602.953102.05660K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for SNX17 is not available on ENCORE database.





9 RBPs can affect the splicing of SNX17 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SESNX17ENSG00000115234.6chr2+275959062759598027595489275956072759611327596178-0.106000.002090.05528excludedK562AKAP8L
SESNX17ENSG00000115234.6chr2+275959062759598027595489275956072759611327596178-0.106000.000560.05496excludedHepG2DDX59
SESNX17ENSG00000115234.6chr2+275959062759598027595489275956072759611327596178-0.059000.000020.00292excludedHepG2TBRG4
SESNX17ENSG00000115234.6chr2+2759590627595980275954892759560727596113275961780.111000.000030.00055includedK562AQR
SESNX17ENSG00000115234.6chr2+275975162759762527597212275973002759792727598020-0.073000.000540.00729excludedK562AQR
SESNX17ENSG00000115234.6chr2+275991792759925427598972275990502759934527599387-0.111000.000000.00002excludedK562AQR
SESNX17ENSG00000115234.6chr2+275959062759598027595489275956072759611327596178-0.138000.000000.00002excludedHepG2FTO
SESNX17ENSG00000115234.6chr2+2759590627595980275954892759560727596113275961780.051000.000020.01642includedK562PUM2
SESNX17ENSG00000115234.6chr2+275954892759560727594135275942102759611327596306-0.079000.000030.00250excludedHepG2SF3B4
SESNX17ENSG00000115234.6chr2+2759590627595980275954892759560727596113275961780.107000.003980.05808includedK562HNRNPC
A3SSSNX17ENSG00000115234.6chr2+275975552759802027597927275980202759712527597300-0.080000.000400.00309shorterK562AQR
RISNX17ENSG00000115234.6chr2+2759755527598020275975552759762527597927275980200.109000.000020.00072includedK562SF3B4
RISNX17ENSG00000115234.6chr2+2759695127597300275969512759704227597212275973000.216000.000000.00000includedHepG2U2AF2
RISNX17ENSG00000115234.6chr2+2759695127597300275969512759704227597212275973000.057000.000590.01849includedHepG2FTO
MXESNX17ENSG00000115234.6chr2+2759548927595607275959062759598027594135275942102759611327596178-0.090000.000000.000032includedK562AQR
MXESNX17ENSG00000115234.6chr2+2759546527595607275959062759598027594135275942102759611327596178-0.124000.000020.000262includedK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for SNX17 is not avaliable on ENCORE database.