SNRNP27

General Information

Gene Name       : SNRNP27
Gene ID             : ENSG00000124380.10
Essential Gene : Yes

Functions

Localization

Domains (AlphaFold: SNRNP27)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878SNRNP27ENSG00000124380.1031.0745.4938.28ENCSR000AEF
HepG2SNRNP27ENSG00000124380.1070.0870.9770.53ENCSR985KAT
K562SNRNP27ENSG00000124380.1064.1962.8063.49ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for SNRNP27 is not avaliable on ENCORE database.



Proteins bound to RNA
  • SNRNP27 RNA is bound by 12 proteins.  







eCLIP assay for SNRNP27 is not avaliable on ENCORE database.





12 proteins are bound to SNRNP27 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr27013166570131735+3'-UTR,5'-UTR,intron-Distal3.707345.75623K562FAM120A
chr27013150970131568+3'-UTR,5'-UTR,CDS,intron-Proximal3.150763.08258K562TIA1
chr27013239070132439+3'-UTR,intron-Distal,intron-Proximal4.408863.77802HepG2U2AF2
chr27013195770132021+3'-UTR,intron-Distal5.8850813.38823K562FAM120A
chr27013218370132219+3'-UTR,intron-Distal3.274804.50192K562FAM120A
chr27013145570131562+3'-UTR,5'-UTR,CDS,intron-Proximal5.257446.57575HepG2SUB1
chr27013211770132176+3'-UTR,intron-Distal3.403906.00918K562FAM120A
chr27013210370132160+3'-UTR,intron-Distal4.193409.44605K562IGF2BP1
chr27013227970132344+3'-UTR,intron-Distal,intron-Proximal4.399075.85485K562KHSRP
chr27013164370131715+3'-UTR,5'-UTR,intron-Distal,intron-Proximal3.531414.65237HepG2U2AF2
chr27013263470132702+3'-UTR,intron-Distal4.109104.58794K562KHSRP
chr27013241070132514+3'-UTR,intron-Distal4.365065.10338HepG2KHSRP
chr27013030970130374+5'-UTR,CDS,intron-Distal,intron-Proximal4.7584910.80414HepG2BCLAF1
chr27012360370123657+CDS4.720586.15968K562UCHL5
chr27013033270130412+5'-UTR,CDS,intron-Distal,intron-Proximal5.275515.35117HepG2PRPF8
chr27012365770123681+CDS,intron-Proximal4.333623.87582K562ZNF622
chr27012455970124590+CDS,intron-Proximal3.149385.00751HepG2BCLAF1
chr27012450870124589+CDS,intron-Proximal3.8251811.58254K562ZNF622
chr27012451370124557+CDS4.111843.45943HepG2BCLAF1
chr27012365770123681+CDS,intron-Proximal3.434833.95937K562UCHL5
chr27013028770130350+5'-UTR,CDS,intron-Distal,intron-Proximal3.284783.05068HepG2U2AF2
chr27012453570124591+CDS,intron-Proximal3.124267.10910K562UCHL5
chr27013030870130351+5'-UTR,CDS,intron-Distal,intron-Proximal4.1490411.02617K562MTPAP
chr27012229170122383+CDS,intron-Proximal5.539197.70650HepG2PRPF8
chr27012991270129988+intron-Distal4.764594.74221HepG2PTBP1
chr27012945170129526+intron-Distal5.3053011.02443K562PTBP1
chr27012981970129874+intron-Distal5.833597.91717K562PTBP1
chr27012490370124980+intron-Distal,intron-Proximal4.096784.65867K562MTPAP
chr27012974770129800+intron-Distal5.7548717.64211K562MTPAP
chr27012556770125667+intron-Distal3.534733.18634K562MTPAP
chr27012470970124771+intron-Distal3.556273.18634K562MTPAP
chr27012952670129621+intron-Distal5.3662911.02443K562PTBP1
chr27013008770130133+intron-Distal5.8032022.97176K562MTPAP
chr27012981470129890+intron-Distal7.2208634.18723K562MTPAP
chr27012947170129599+intron-Distal5.110697.01471K562TIA1
chr27012969670129838+intron-Distal4.9717311.22811HepG2PTBP1
chr27012989070130021+intron-Distal8.1092057.82174K562MTPAP
chr27012955970129688+intron-Distal3.547995.93274HepG2PTBP1
chr27012846070128514+intron-Distal4.732825.51000K562MTPAP
chr27013045870130545+intron-Distal,intron-Proximal3.846073.25538K562KHSRP
chr27012969470129745+intron-Distal6.9154122.60220K562MTPAP
chr27012993570130034+intron-Distal3.879203.77680K562TIA1
chr27012956370129614+intron-Distal6.4753614.48238K562MTPAP
chr27012937470129509+intron-Distal4.2282910.66089HepG2PTBP1
chr27012961470129694+intron-Distal7.1323325.32182K562MTPAP
chr27012944170129563+intron-Distal7.7812347.53281K562MTPAP
chr27012980070129874+intron-Distal4.385115.23751K562TIA1
chr27012963570129767+intron-Distal5.2245716.59938K562PTBP1
chr27012479370124879+5'-UTR,intron-Distal,intron-Proximal5.4529810.12625K562MTPAP
chr27012964570129745+intron-Distal3.791914.96675K562TIA1
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for SNRNP27 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for SNRNP27 is not available on ENCORE database.

  • 70 RBPs can affect the levels of SNRNP27.  








The Knockdown/knockout RNA-Seq assay for SNRNP27 is not available on ENCORE database.





70 RBPs can affect the gene expression of SNRNP27 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
SNRNP27ENSG00000124380.62282.350401420.612000.683906.831106.03680HepG2AKAP1
SNRNP27ENSG00000124380.6970.098401164.16830-0.263101.977601.31680HepG2CALR
SNRNP27ENSG00000124380.61144.384001600.71620-0.484103.230502.17260HepG2CCAR1
SNRNP27ENSG00000124380.6889.855401116.70410-0.327602.051901.37920HepG2CIRBP
SNRNP27ENSG00000124380.61486.02210846.297600.812106.027004.89610HepG2CNOT7
SNRNP27ENSG00000124380.6756.232301312.25490-0.795104.205403.37280HepG2CPSF6
SNRNP27ENSG00000124380.61320.741701150.567400.198902.061101.40780HepG2DAZAP1
SNRNP27ENSG00000124380.6459.20420706.71480-0.622004.062903.14490HepG2DDX55
SNRNP27ENSG00000124380.6465.54290712.06360-0.613109.004407.90830HepG2DNAJC2
SNRNP27ENSG00000124380.6521.56010763.99500-0.550703.927302.85990HepG2EIF3D
SNRNP27ENSG00000124380.6978.112701241.59980-0.344102.018901.47040HepG2EIF4A3
SNRNP27ENSG00000124380.6977.64020793.116800.301702.018601.30790HepG2EWSR1
SNRNP27ENSG00000124380.6886.443501234.24950-0.477503.987202.91070HepG2G3BP2
SNRNP27ENSG00000124380.6550.416201487.69340-1.4345010.014408.85020HepG2GPKOW
SNRNP27ENSG00000124380.6472.98880725.26460-0.616705.474104.60840HepG2HNRNPA1
SNRNP27ENSG00000124380.6622.67640806.73110-0.373602.472401.81400HepG2HNRNPC
SNRNP27ENSG00000124380.6842.482501177.52060-0.483004.229203.38140HepG2HNRNPK
SNRNP27ENSG00000124380.6713.881201419.71960-0.991906.016305.12490HepG2HNRNPLL
SNRNP27ENSG00000124380.6860.380701181.34150-0.457403.613802.85170HepG2IGF2BP2
SNRNP27ENSG00000124380.6629.750001050.34530-0.738009.417608.00950HepG2MSI2
SNRNP27ENSG00000124380.61134.03870881.936400.362603.011601.74520HepG2NAA15
SNRNP27ENSG00000124380.6806.97650619.006500.382502.816701.38510HepG2NIP7
SNRNP27ENSG00000124380.6699.198901148.72560-0.716307.343706.17820HepG2PABPC4
SNRNP27ENSG00000124380.6524.323601236.66990-1.2379036.7913035.01550HepG2PCBP1
SNRNP27ENSG00000124380.61209.87080819.268600.562303.444802.28770HepG2PCBP2
SNRNP27ENSG00000124380.6576.35700714.78050-0.310502.349401.66530HepG2PPIL4
SNRNP27ENSG00000124380.6965.11070782.662700.302202.771501.99780HepG2PRPF4
SNRNP27ENSG00000124380.6360.33960545.22840-0.597503.739902.81790HepG2PRPF8
SNRNP27ENSG00000124380.6833.012601258.37150-0.595109.900708.99110HepG2PTBP1
SNRNP27ENSG00000124380.6582.53560826.69590-0.505006.610005.72870HepG2PUS1
SNRNP27ENSG00000124380.61122.967301362.81840-0.279302.423801.83300HepG2QKI
SNRNP27ENSG00000124380.61128.70590790.638400.513502.343201.69080HepG2RAVER1
SNRNP27ENSG00000124380.6616.93090825.45590-0.420102.399701.48410HepG2RBM27
SNRNP27ENSG00000124380.6435.00340670.30500-0.623803.667102.44400HepG2RCC2
SNRNP27ENSG00000124380.6934.058901400.43540-0.5843010.027409.11640HepG2NELFE
SNRNP27ENSG00000124380.6885.237601304.33570-0.559209.245908.21890HepG2RECQL
SNRNP27ENSG00000124380.6528.34910761.31950-0.527003.797802.86440HepG2RPS2
SNRNP27ENSG00000124380.61521.708801066.624400.512503.640202.86330HepG2SF3A3
SNRNP27ENSG00000124380.6999.245801310.10280-0.390804.930304.17670HepG2SF3B4
SNRNP27ENSG00000124380.61691.896001212.188600.480909.334308.56370HepG2SRFBP1
SNRNP27ENSG00000124380.61147.658401367.47360-0.252802.562902.10310HepG2SRSF1
SNRNP27ENSG00000124380.6611.055801112.52120-0.8645019.7434018.51270HepG2SRSF9
SNRNP27ENSG00000124380.6870.791101052.49640-0.273402.547002.04960HepG2SSB
SNRNP27ENSG00000124380.6788.421801103.74720-0.485403.500602.07210HepG2SSRP1
SNRNP27ENSG00000124380.6955.958501229.16620-0.362703.769503.13170HepG2TAF15
SNRNP27ENSG00000124380.61489.064001110.087200.423603.594002.88150HepG2U2AF1
SNRNP27ENSG00000124380.61267.278701040.345300.284603.597802.99580HepG2ZNF622
SNRNP27ENSG00000124380.61461.72520985.392500.5688010.667509.64800K562AGGF1
SNRNP27ENSG00000124380.61506.787401025.355300.555306.658905.61220K562AKAP8L
SNRNP27ENSG00000124380.61325.081701075.863100.300503.105202.13370K562ATP5C1
SNRNP27ENSG00000124380.61172.929501516.39870-0.370504.521603.08400K562CPEB4
SNRNP27ENSG00000124380.61933.480601568.939300.301304.056903.28840K562DDX47
SNRNP27ENSG00000124380.61424.632101103.294300.368704.648303.46850K562DKC1
SNRNP27ENSG00000124380.6752.65920537.850600.484702.910801.59380K562EEF2
SNRNP27ENSG00000124380.6703.00820519.719900.435703.095702.12710K562EFTUD2
SNRNP27ENSG00000124380.61074.95300776.377800.469303.608302.29460K562FKBP4
SNRNP27ENSG00000124380.6985.639201601.52330-0.700302.479101.72470K562GPKOW
SNRNP27ENSG00000124380.6688.93660894.77810-0.377202.773102.17540K562HNRNPC
SNRNP27ENSG00000124380.6601.85260798.90920-0.408603.023501.82560K562HNRNPF
SNRNP27ENSG00000124380.61071.344901417.93820-0.404403.943502.65450K562HNRNPL
SNRNP27ENSG00000124380.61521.101401022.407400.573002.348501.49460K562HNRNPM
SNRNP27ENSG00000124380.61464.738801088.123900.428704.205403.16050K562KIF1C
SNRNP27ENSG00000124380.61622.088201218.978400.412104.489403.27550K562MBNL1
SNRNP27ENSG00000124380.61355.20500854.418600.665405.471104.08100K562NAA15
SNRNP27ENSG00000124380.6954.364501190.94100-0.319504.370403.45570K562NSUN2
SNRNP27ENSG00000124380.6945.29030743.403000.346502.480601.55730K562PCBP2
SNRNP27ENSG00000124380.6841.62460505.745200.734707.449206.21970K562PRPF8
SNRNP27ENSG00000124380.61750.302001016.801200.7835011.6238010.55960K562PUS1
SNRNP27ENSG00000124380.61543.07880990.777500.6391011.2260010.05200K562RBM15
SNRNP27ENSG00000124380.6474.56340731.75510-0.624806.021204.55720K562RCC2
SNRNP27ENSG00000124380.61060.76740515.220401.0417013.0456011.24730K562RPS19
SNRNP27ENSG00000124380.6751.33810517.170800.538703.230801.79580K562RRP9
SNRNP27ENSG00000124380.6656.80210432.828000.601603.478501.71120K562SERBP1
SNRNP27ENSG00000124380.61028.982101203.89570-0.226502.226701.37790K562SRPK2
SNRNP27ENSG00000124380.6646.65790489.781400.400802.319801.39370K562SUPV3L1
SNRNP27ENSG00000124380.61043.63120731.539300.512503.512701.49520K562TRNAU1AP
SNRNP27ENSG00000124380.6998.306801262.77640-0.339004.053703.19980K562UPF1
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for SNRNP27 is not available on ENCORE database.





1 RBPs can affect the splicing of SNRNP27 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
A3SSSNRNP27ENSG00000124380.6chr2+7012219770122346701222257012234670121095701211500.080000.000000.00000longerK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for SNRNP27 is not avaliable on ENCORE database.