RP11-977G19.10

General Information

Gene Name       : RP11-977G19.10
Gene ID             :
Essential Gene : No

Functions

Localization

Domains (AlphaFold: RP11-977G19.10)


Antibody Validation


Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for RP11-977G19.10 is not avaliable on ENCORE database.



Proteins bound to RNA

  • RP11-977G19.10 RNA is bound by 19 proteins.  







eCLIP assay for RP11-977G19.10 is not avaliable on ENCORE database.





19 proteins are bound to RP11-977G19.10 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr125670956656709670-5'-UTR,intron-Distal,intron-Proximal4.145183.25631HepG2PRPF4
chr125670971456709774-5'-UTR,intron-Distal,intron-Proximal4.931149.38330HepG2RPS3
chr125670960356709686-5'-UTR,intron-Distal,intron-Proximal3.001077.10642HepG2LARP4
chr125670965556709728-5'-UTR,intron-Distal,intron-Proximal4.5995558.78302HepG2DDX3X
chr125670964556709780-5'-UTR,intron-Distal,intron-Proximal4.2941013.37398K562DDX3X
chr125670960356709621-5'-UTR,intron-Distal,intron-Proximal5.3115116.99768HepG2RPS3
chr125670901256709026-5'-UTR,intron-Distal,intron-Proximal4.9510327.01892HepG2DDX3X
chr125670901356709027-5'-UTR,intron-Distal,intron-Proximal5.830329.89347HepG2RPS3
chr125670955556709639-5'-UTR,intron-Distal,intron-Proximal3.489716.82513HepG2PRPF8
chr125670960356709650-5'-UTR,intron-Distal,intron-Proximal4.3185450.50205HepG2DDX3X
chr125670901256709026-5'-UTR,intron-Distal,intron-Proximal3.101624.31628HepG2EIF3D
chr125670972856709796-5'-UTR,intron-Distal,intron-Proximal4.0819521.68531HepG2DDX3X
chr125670960456709610-5'-UTR,intron-Distal,intron-Proximal3.185115.99833HepG2EIF3D
chr125670962156709655-5'-UTR,intron-Distal,intron-Proximal5.0210315.58419HepG2RPS3
chr125667972856679788-3'-UTR,CDS,intron-Distal,intron-Proximal3.317439.26196HepG2AQR
chr125670862256708674-CDS,intron-Distal,intron-Proximal3.496155.74981HepG2GRWD1
chr125670474356704799-3'-UTR,CDS,intron-Distal,intron-Proximal3.814414.88141HepG2GRWD1
chr125668035456680427-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal3.038897.42914HepG2GRWD1
chr125670495756705002-3'-UTR,CDS,intron-Distal,intron-Proximal3.9514712.44852K562PRPF8
chr125670862756708722-5'-UTR,CDS,intron-Distal,intron-Proximal3.1141310.35370HepG2PPIG
chr125670502956705086-3'-UTR,CDS,intron-Distal,intron-Proximal3.826248.54238HepG2GRWD1
chr125667978856679867-3'-UTR,CDS,intron-Distal,intron-Proximal4.1245317.99212HepG2AQR
chr125669399356694128-5'-UTR,CDS,intron-Distal,intron-Proximal3.063308.47506K562PCBP1
chr125667979856679850-3'-UTR,CDS,intron-Distal,intron-Proximal4.247764.16174HepG2PRPF8
chr125669394356693956-5'-UTR,CDS,intron-Distal,intron-Proximal3.4146710.26447K562YBX3
chr125667975956679814-3'-UTR,CDS,intron-Distal,intron-Proximal3.8774716.10216K562AQR
chr125670480256704875-3'-UTR,CDS,intron-Distal,intron-Proximal4.464545.97994K562AQR
chr125670511856705143-3'-UTR,CDS,intron-Distal,intron-Proximal4.093789.10091HepG2TROVE2
chr125670499256705029-3'-UTR,CDS,intron-Distal,intron-Proximal3.289716.18332HepG2GRWD1
chr125670495456705014-3'-UTR,CDS,intron-Distal,intron-Proximal5.5245328.97412HepG2PRPF8
chr125670859756708658-CDS,intron-Distal,intron-Proximal3.488305.56806HepG2PRPF8
chr125670480256704873-3'-UTR,CDS,intron-Distal,intron-Proximal3.295273.96619HepG2AQR
chr125670891356708993-CDS,intron-Distal,intron-Proximal3.6929910.63554K562DDX3X
chr125670470956704751-3'-UTR,CDS,intron-Distal,intron-Proximal4.235875.34978HepG2PRPF8
chr125667980456679847-3'-UTR,CDS,intron-Distal,intron-Proximal4.4589612.63098HepG2SF3A3
chr125670891356708999-CDS,intron-Distal,intron-Proximal5.1704666.19899HepG2DDX3X
chr125670481756704834-3'-UTR,CDS,intron-Distal3.304513.54552HepG2LARP4
chr125667967356679701-CDS,intron-Distal,intron-Proximal4.5735012.85453K562AQR
chr125670867056708748-5'-UTR,CDS,intron-Distal4.0510011.84324HepG2RPS3
chr125669399556694080-5'-UTR,CDS,intron-Distal,intron-Proximal4.390944.29075K562NCBP2
chr125670511256705157-3'-UTR,CDS,intron-Distal,intron-Proximal5.261547.48551K562TROVE2
chr125670891756708994-CDS,intron-Distal,intron-Proximal4.6363430.52153HepG2RPS3
chr125670474156704785-3'-UTR,CDS,intron-Distal,intron-Proximal3.030355.65251HepG2LARP4
chr125670864256708748-5'-UTR,CDS,intron-Distal4.1099514.76845HepG2LARP4
chr125670506056705132-3'-UTR,CDS,intron-Distal,intron-Proximal3.296584.89070K562UCHL5
chr125670514756705157-3'-UTR,CDS,intron-Distal,intron-Proximal4.006417.48789HepG2TROVE2
chr125670499356705042-3'-UTR,CDS,intron-Distal,intron-Proximal3.420946.08695HepG2LARP4
chr125670886956709002-CDS,intron-Distal,intron-Proximal3.1149514.34954HepG2PRPF8
chr125668025956680354-3'-UTR,intron-Distal,intron-Proximal3.122836.07026HepG2GRWD1
chr125670469856704726-intron-Distal,intron-Proximal4.622378.30573K562AQR
chr125670466956704720-intron-Distal,intron-Proximal4.559685.17894K562PRPF8
chr125670494356704992-intron-Distal,intron-Proximal4.659953.95187HepG2AQR
chr125669403556694135-5'-UTR,intron-Distal,intron-Proximal3.016686.63982K562DDX3X
chr125670472656704741-intron-Distal,intron-Proximal4.153076.39176K562AQR
chr125668016356680205-intron-Distal,intron-Proximal3.502464.71060K562BUD13
chr125668022556680296-3'-UTR,intron-Distal,intron-Proximal4.979586.71255K562GPKOW
chr125670849656708542-intron-Distal,intron-Proximal5.2425311.52455K562PABPC4
chr125670819456708317-intron-Distal,intron-Proximal3.346615.87795K562KHDRBS1
chr125668023756680281-intron-Distal,intron-Proximal5.015955.33214K562PRPF8
chr125667981456679872-intron-Distal,intron-Proximal5.2353015.45935K562AQR
chr125667965856679673-intron-Distal,intron-Proximal6.0323013.28065K562AQR
chr125668025156680314-3'-UTR,intron-Distal,intron-Proximal5.1211213.23057K562AQR
chr125670495856704981-intron-Distal,intron-Proximal4.9645411.42662K562AQR
chr125668022256680251-intron-Distal,intron-Proximal5.8533412.10660K562AQR
chr125668023756680282-3'-UTR,intron-Distal,intron-Proximal4.6044310.73647HepG2AQR
chr125668022356680281-intron-Distal,intron-Proximal3.214575.33133K562BUD13
chr125670846656708485-intron-Distal6.021274.82899K562PABPC4
chr125670425756704381-3'-UTR,CDS,intron-Distal,intron-Proximal3.7380612.95841HepG2LARP4
chr125668023256680290-3'-UTR,intron-Distal,intron-Proximal4.403019.78963HepG2PRPF8
chr125670498156704995-intron-Distal,intron-Proximal4.3261210.54823K562AQR
chr125667966156679699-intron-Distal,intron-Proximal3.450553.98203HepG2PRPF8
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for RP11-977G19.10 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for RP11-977G19.10 is not available on ENCORE database.

  • 69 RBPs can affect the levels of RP11-977G19.10.  








The Knockdown/knockout RNA-Seq assay for RP11-977G19.10 is not available on ENCORE database.





69 RBPs can affect the gene expression of RP11-977G19.10 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
RP11-977G19.10ENSG00000144785.4106.2662013.747302.950403.119902.55900HepG2AKAP1
RP11-977G19.10ENSG00000144785.467.29440166.26460-1.304905.731704.66340HepG2AKAP8L
RP11-977G19.10ENSG00000144785.40.0000019.70370-99999.999995.460204.42340HepG2CALR
RP11-977G19.10ENSG00000144785.40.000008.42920-99999.999992.608201.72350HepG2DDX24
RP11-977G19.10ENSG00000144785.473.9276018.261002.017302.845901.47150HepG2DDX52
RP11-977G19.10ENSG00000144785.4170.648607.380304.5311023.4575021.54900HepG2DDX55
RP11-977G19.10ENSG00000144785.475.52410158.34300-1.068005.435404.54380HepG2DKC1
RP11-977G19.10ENSG00000144785.423.010403.221402.836402.101201.47980HepG2DNAJC21
RP11-977G19.10ENSG00000144785.460.962103.185604.2582012.1039010.84290HepG2DNAJC2
RP11-977G19.10ENSG00000144785.441.6021010.870201.936203.581002.91080HepG2EIF2S1
RP11-977G19.10ENSG00000144785.463.6836015.805002.010405.993404.23490HepG2FAM120A
RP11-977G19.10ENSG00000144785.410.10050105.98770-3.3914018.1974016.26420HepG2FUBP3
RP11-977G19.10ENSG00000144785.4159.0109012.132103.7121025.0141023.17880HepG2FXR1
RP11-977G19.10ENSG00000144785.40.0000011.95010-99999.999993.479202.47330HepG2G3BP2
RP11-977G19.10ENSG00000144785.430.914003.485303.148802.879001.47820HepG2HNRNPA0
RP11-977G19.10ENSG00000144785.4103.6945011.408103.184101.954301.36030HepG2HNRNPK
RP11-977G19.10ENSG00000144785.40.0000047.76320-99999.999992.665502.04560HepG2HNRNPLL
RP11-977G19.10ENSG00000144785.422.476103.591302.645703.400802.73540HepG2HNRNPU
RP11-977G19.10ENSG00000144785.4115.5814028.671402.011103.414002.49060HepG2LARP4
RP11-977G19.10ENSG00000144785.40.000009.64790-99999.999992.832401.39680HepG2NIP7
RP11-977G19.10ENSG00000144785.4126.1278030.433502.051102.794701.35680HepG2NKRF
RP11-977G19.10ENSG00000144785.4114.178504.953904.5265025.4475023.31630HepG2NOL12
RP11-977G19.10ENSG00000144785.4301.211606.807805.4673026.7054023.26990HepG2NONO
RP11-977G19.10ENSG00000144785.425.472303.743402.766403.697102.66010HepG2PABPC1
RP11-977G19.10ENSG00000144785.490.3408014.601202.6292011.276709.01690HepG2PKM
RP11-977G19.10ENSG00000144785.466.598504.597103.856601.819301.35780HepG2PTBP1
RP11-977G19.10ENSG00000144785.4110.602804.723804.549204.369703.64060HepG2PUF60
RP11-977G19.10ENSG00000144785.4280.788205.008605.8088028.9816027.47090HepG2PUM1
RP11-977G19.10ENSG00000144785.449.72570168.58110-1.761403.345302.68330HepG2PUS1
RP11-977G19.10ENSG00000144785.4146.6115012.862303.5107021.2015018.50750HepG2RBM27
RP11-977G19.10ENSG00000144785.418.119805.111801.825601.837801.37710HepG2NELFE
RP11-977G19.10ENSG00000144785.4108.5039017.190902.657905.677704.83280HepG2RPS19
RP11-977G19.10ENSG00000144785.462.8599012.108802.376003.686902.43720HepG2RPS5
RP11-977G19.10ENSG00000144785.438.156203.890103.293906.606804.61080HepG2SART3
RP11-977G19.10ENSG00000144785.4127.982704.517104.824302.878802.16460HepG2SLBP
RP11-977G19.10ENSG00000144785.40.0000052.59000-99999.999992.817002.02900HepG2SNRNP70
RP11-977G19.10ENSG00000144785.435.404104.989702.826803.147102.65110HepG2SRSF1
RP11-977G19.10ENSG00000144785.4209.076504.656905.4884010.944009.81060HepG2SRSF5
RP11-977G19.10ENSG00000144785.4200.905405.302305.2436048.4584046.43290HepG2SUCLG1
RP11-977G19.10ENSG00000144785.417.225604.495701.937802.070501.57240HepG2TAF15
RP11-977G19.10ENSG00000144785.4120.358804.912204.614703.041301.99930HepG2TFIP11
RP11-977G19.10ENSG00000144785.4116.920303.520205.053605.844205.07860HepG2TRIM56
RP11-977G19.10ENSG00000144785.4224.373104.605205.6064027.7462024.93320HepG2TUFM
RP11-977G19.10ENSG00000144785.429.6725010.555501.491001.855701.35660K562AQR
RP11-977G19.10ENSG00000144785.441.733600.0000099999.999903.539202.44730K562BCLAF1
RP11-977G19.10ENSG00000144785.411.0330051.11550-2.211902.563101.43900K562CCDC124
RP11-977G19.10ENSG00000144785.474.248600.0000099999.9999022.6981019.50940K562CSTF2
RP11-977G19.10ENSG00000144785.422.22270136.81400-2.622103.513702.41180K562CELF1
RP11-977G19.10ENSG00000144785.4114.6702030.242401.922704.679903.08370K562DDX21
RP11-977G19.10ENSG00000144785.419.056400.0000099999.999904.171202.52800K562DDX27
RP11-977G19.10ENSG00000144785.40.0000012.59240-99999.999994.017802.54160K562EIF2S1
RP11-977G19.10ENSG00000144785.430.1284011.972801.331302.005601.30360K562EIF4A3
RP11-977G19.10ENSG00000144785.40.4497016.60890-5.206804.524402.67240K562GEMIN5
RP11-977G19.10ENSG00000144785.444.5593011.018702.015702.305401.75390K562HNRNPC
RP11-977G19.10ENSG00000144785.4141.386505.105304.7914026.2239022.99910K562HNRNPM
RP11-977G19.10ENSG00000144785.469.455808.433703.041806.565905.35410K562HSPD1
RP11-977G19.10ENSG00000144785.430.519904.699602.699104.304303.25320K562MAGOH
RP11-977G19.10ENSG00000144785.42.4388045.20120-4.212106.373604.46790K562MAK16
RP11-977G19.10ENSG00000144785.47.5013052.90860-2.818305.908404.48670K562MBNL1
RP11-977G19.10ENSG00000144785.469.7195015.347102.183507.437406.16800K562MTPAP
RP11-977G19.10ENSG00000144785.40.0000015.70360-99999.999994.991202.48250K562PES1
RP11-977G19.10ENSG00000144785.48.3122044.15050-2.409103.320302.73400K562PUS1
RP11-977G19.10ENSG00000144785.40.0000016.46910-99999.999995.004103.21620K562RRP9
RP11-977G19.10ENSG00000144785.453.0503016.820501.657003.892502.59740K562SAFB
RP11-977G19.10ENSG00000144785.40.000007.53600-99999.999992.297601.52040K562SF3B4
RP11-977G19.10ENSG00000144785.418.570100.0000099999.999905.356102.91360K562SLTM
RP11-977G19.10ENSG00000144785.463.2322021.524901.554604.007602.17570K562SRSF9
RP11-977G19.10ENSG00000144785.49.665400.0000099999.999902.655801.40790K562SSB
RP11-977G19.10ENSG00000144785.477.5653017.909102.114606.467103.76980K562TRNAU1AP
RP11-977G19.10ENSG00000144785.42.6615016.50690-2.632802.595601.61350K562UCHL5
RP11-977G19.10ENSG00000144785.433.3584098.00050-1.554704.827303.23510K562UTP3
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for RP11-977G19.10 is not available on ENCORE database.





12 RBPs can affect the splicing of RP11-977G19.10 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SERP11-977G19.10ENSG00000144785.4chr12-5669239256692475566802805668042956693943566940040.059000.002520.08793includedHepG2SFPQ
SERP11-977G19.10ENSG00000144785.4chr12-5669239256692475566802805668042956693943566940040.058000.000000.00005includedHepG2HNRNPC
A3SSRP11-977G19.10ENSG00000144785.4chr12-5670499456705237567049945670519856708634567087500.057000.000520.09270longerK562SUPV3L1
A5SSRP11-977G19.10ENSG00000144785.4chr12-567096045670984356709690567098435670891356709026-0.144000.000000.00103shorterHepG2SRSF9
MXERP11-977G19.10ENSG00000144785.4chr12-5670863456708750567089135670902656704994567051985670960456709727-0.122000.002590.063242includedK562RBM15
MXERP11-977G19.10ENSG00000144785.4chr12-56685414566855775669239256692475566802805668042956693943566940040.527000.002670.066181includedK562XRN2
MXERP11-977G19.10ENSG00000144785.4chr12-56693943566940325670428156704379566803785668042956704741567048380.146000.000010.030021includedHepG2UTP18
MXERP11-977G19.10ENSG00000144785.4chr12-56693943566940045670428156704379566803785668042956704741567048380.144000.000020.034811includedHepG2UTP18
MXERP11-977G19.10ENSG00000144785.4chr12-56693943566940045670428156704379566803785668042956704741567048380.148000.000000.000781includedHepG2HLTF
MXERP11-977G19.10ENSG00000144785.4chr12-5669394356694004567042815670437956680378566804295670474156704838-0.108000.000260.009062includedHepG2DDX55
MXERP11-977G19.10ENSG00000144785.4chr12-56685414566855775669239256692475566802805668042956693943566940040.733000.000010.001051includedHepG2HNRNPC
MXERP11-977G19.10ENSG00000144785.4chr12-5670863456708750567089135670902656704994567051985670960456709727-0.174000.000110.006352includedK562DHX30
MXERP11-977G19.10ENSG00000144785.4chr12-56685414566855775669239256692475566803785668042956693943566940040.776000.004260.083221includedHepG2TIAL1
MXERP11-977G19.10ENSG00000144785.4chr12-56693943566940045670374956703813566803785668042956704741567048380.070000.000450.050441includedK562FMR1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for RP11-977G19.10 is not avaliable on ENCORE database.