RP11-399J13.3

General Information

Gene Name       : RP11-399J13.3
Gene ID             :
Essential Gene : No

Functions

Localization

Domains (AlphaFold: RP11-399J13.3)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for RP11-399J13.3 is not avaliable on ENCORE database.



Proteins bound to RNA
  • RP11-399J13.3 RNA is bound by 15 proteins.  







eCLIP assay for RP11-399J13.3 is not avaliable on ENCORE database.





15 proteins are bound to RP11-399J13.3 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr116480236564802379+3'-UTR,CDS,intron-Distal3.664073.22721K562YBX3
chr116478166064781745+5'-UTR,CDS,intron-Proximal4.4635312.05885K562PABPC4
chr116478161464781706+5'-UTR,CDS3.736446.97927K562DDX3X
chr116478604264786121+CDS,intron-Proximal3.114875.48666K562METAP2
chr116478604164786054+CDS,intron-Proximal3.594618.43159K562YBX3
chr116478583664785901+CDS3.761837.27995K562PABPC4
chr116478584664785887+CDS3.0980013.04052K562YBX3
chr116478604264786106+CDS,intron-Proximal3.567926.09767K562UCHL5
chr116478604064786183+CDS,intron-Proximal4.102516.84754HepG2GRWD1
chr116478612164786203+CDS4.004824.75480HepG2RPS3
chr116478592164785947+CDS,intron-Proximal3.245826.77366K562YBX3
chr116478608064786178+CDS3.765275.19325HepG2LARP4
chr116478612164786203+CDS4.526214.49458K562METAP2
chr116478587264785946+CDS4.180725.04143K562GRWD1
chr116478620464786254+CDS,intron-Proximal4.964545.17615K562AQR
chr116478583464785851+CDS,intron-Proximal3.997744.92682K562DDX55
chr116478588764785921+CDS3.8499016.21789K562YBX3
chr116478943564789546+3'-UTR,intron-Distal,intron-Proximal3.206267.69995K562IGF2BP2
chr116478932364789378+3'-UTR,CDS,intron-Distal,intron-Proximal3.207583.67576K562IGF2BP2
chr116478936564789424+3'-UTR,intron-Distal,intron-Proximal3.841723.35877HepG2UPF1
chr116478791564787964+CDS,intron-Distal3.383979.93836K562YBX3
chr116478956264789627+3'-UTR,intron-Distal5.3129816.66765K562PABPC4
chr116478941164789615+3'-UTR,intron-Distal,intron-Proximal4.0759615.47176HepG2LARP4
chr116478937464789435+3'-UTR,intron-Distal,intron-Proximal3.795736.00535K562METAP2
chr116478928764789411+3'-UTR,CDS,intron-Distal,intron-Proximal5.1496515.30399HepG2LARP4
chr116478953864789621+3'-UTR,intron-Distal3.527225.11124K562DDX6
chr116478928464789339+3'-UTR,CDS,intron-Distal4.4248912.35914K562PABPC4
chr116478949864789551+3'-UTR,intron-Distal4.8937313.44822K562PABPC4
chr116478941864789467+3'-UTR,intron-Distal,intron-Proximal4.026167.65013K562PABPC4
chr116478928564789362+3'-UTR,CDS,intron-Distal,intron-Proximal3.5447311.48996K562DDX55
chr116478942464789615+3'-UTR,intron-Distal,intron-Proximal5.7827714.82289HepG2UPF1
chr116478922564789374+3'-UTR,CDS,intron-Distal,intron-Proximal5.299296.54919HepG2RPS3
chr116478943164789620+3'-UTR,intron-Distal,intron-Proximal3.102214.88668HepG2AKAP1
chr116478936264789413+3'-UTR,intron-Distal,intron-Proximal4.076543.94601K562PCBP1
chr116478933964789402+3'-UTR,intron-Distal,intron-Proximal4.1518611.02630K562PABPC4
chr116478943364789527+3'-UTR,intron-Distal,intron-Proximal3.004646.31483K562DDX55
chr116478936264789433+3'-UTR,intron-Distal,intron-Proximal3.128498.77682K562DDX55
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for RP11-399J13.3 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for RP11-399J13.3 is not available on ENCORE database.

  • 83 RBPs can affect the levels of RP11-399J13.3.  








The Knockdown/knockout RNA-Seq assay for RP11-399J13.3 is not available on ENCORE database.





83 RBPs can affect the gene expression of RP11-399J13.3 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
RP11-399J13.3ENSG00000273003.1263.00460432.92100-0.719004.324003.16550HepG2ABCF1
RP11-399J13.3ENSG00000273003.10.00000323.14140-99999.999993.425502.84220HepG2AKAP1
RP11-399J13.3ENSG00000273003.10.00000267.48310-99999.999993.224502.37690HepG2ASCC1
RP11-399J13.3ENSG00000273003.198.53830324.41070-1.7191018.6644015.84580HepG2BUD13
RP11-399J13.3ENSG00000273003.164.87230303.88330-2.2278027.5009023.14170HepG2CEBPZ
RP11-399J13.3ENSG00000273003.10.00000356.59140-99999.99999104.99550100.92330HepG2CPSF7
RP11-399J13.3ENSG00000273003.10.00000309.78260-99999.999993.373902.69210HepG2DDX3X
RP11-399J13.3ENSG00000273003.10.00000265.55030-99999.999993.224602.56320HepG2DDX6
RP11-399J13.3ENSG00000273003.1124.41870380.08130-1.611103.027502.35120HepG2DNAJC2
RP11-399J13.3ENSG00000273003.10.00000415.73710-99999.9999915.3076013.41380HepG2EEF2
RP11-399J13.3ENSG00000273003.10.00000328.46070-99999.9999994.9461090.58210HepG2EIF2S2
RP11-399J13.3ENSG00000273003.1439.32810647.82960-0.560304.242203.24800HepG2EIF4G2
RP11-399J13.3ENSG00000273003.154.80280301.50730-2.459903.138001.88120HepG2FAM120A
RP11-399J13.3ENSG00000273003.1210.043500.0000099999.999902.458401.71730HepG2FUBP3
RP11-399J13.3ENSG00000273003.10.00000300.62030-99999.9999913.2019011.36180HepG2GEMIN5
RP11-399J13.3ENSG00000273003.1435.76570629.97880-0.531805.058403.85710HepG2HNRNPA2B1
RP11-399J13.3ENSG00000273003.1424.04670145.016301.547902.119601.56110HepG2HNRNPLL
RP11-399J13.3ENSG00000273003.183.09670301.66270-1.8601020.0255017.89760HepG2HNRNPM
RP11-399J13.3ENSG00000273003.1143.33690427.64120-1.577001.975801.45440HepG2HNRNPU
RP11-399J13.3ENSG00000273003.10.00000269.05730-99999.999993.202602.48250HepG2IGF2BP2
RP11-399J13.3ENSG00000273003.10.00000251.88620-99999.999993.005601.97990HepG2IGF2BP3
RP11-399J13.3ENSG00000273003.10.00000270.34130-99999.999993.233502.13800HepG2KHSRP
RP11-399J13.3ENSG00000273003.16.03480332.63000-5.7845076.7712072.40600HepG2LARP7
RP11-399J13.3ENSG00000273003.168.00590349.31120-2.360805.256303.58030HepG2LIN28B
RP11-399J13.3ENSG00000273003.10.00000284.81470-99999.999993.306402.59000HepG2MAGOH
RP11-399J13.3ENSG00000273003.10.00000286.54090-99999.999993.315202.63030HepG2MATR3
RP11-399J13.3ENSG00000273003.10.00000293.39800-99999.999993.329102.63640HepG2NCBP2
RP11-399J13.3ENSG00000273003.1373.40490679.71060-0.864202.065301.40350HepG2NOL12
RP11-399J13.3ENSG00000273003.1141.20040326.34720-1.208706.083203.98380HepG2NOLC1
RP11-399J13.3ENSG00000273003.1152.18130337.95150-1.151004.796402.11190HepG2NUSAP1
RP11-399J13.3ENSG00000273003.10.00000261.78370-99999.999993.185102.41240HepG2PABPC4
RP11-399J13.3ENSG00000273003.1237.06790411.78530-0.796602.317401.36470HepG2PCBP2
RP11-399J13.3ENSG00000273003.149.63110279.16470-2.491802.501701.33720HepG2PKM
RP11-399J13.3ENSG00000273003.142.62590381.41210-3.161506.085105.02430HepG2PPIL4
RP11-399J13.3ENSG00000273003.1200.21240648.85110-1.696404.467003.73020HepG2PUF60
RP11-399J13.3ENSG00000273003.133.45470688.79320-4.36380144.09460141.37280HepG2PUM1
RP11-399J13.3ENSG00000273003.1107.82740688.28440-2.674309.164407.97950HepG2PUM2
RP11-399J13.3ENSG00000273003.1130.28620397.39930-1.608903.012602.27960HepG2RAVER1
RP11-399J13.3ENSG00000273003.1149.72370311.80490-1.058306.657003.87200HepG2RBM14
RP11-399J13.3ENSG00000273003.10.00000401.09130-99999.99999112.75200108.36780HepG2RBM27
RP11-399J13.3ENSG00000273003.11.99130369.92400-7.5374093.8249090.22290HepG2RPS2
RP11-399J13.3ENSG00000273003.154.15240377.59970-2.8018019.6211016.89260HepG2RPS5
RP11-399J13.3ENSG00000273003.178.28860622.16580-2.9904015.0037013.60370HepG2SLBP
RP11-399J13.3ENSG00000273003.167.59020405.10570-2.583407.906206.24860HepG2SMNDC1
RP11-399J13.3ENSG00000273003.1388.0709096.259802.011203.141102.64560HepG2SRSF1
RP11-399J13.3ENSG00000273003.10.00000640.65690-99999.99999171.28220167.49850HepG2SRSF5
RP11-399J13.3ENSG00000273003.1101.12270292.05330-1.530102.693001.47050HepG2STAU1
RP11-399J13.3ENSG00000273003.110.35920728.59400-6.13610182.26560179.12800HepG2SUCLG1
RP11-399J13.3ENSG00000273003.10.00000295.24710-99999.9999987.1777083.11760HepG2SUPT6H
RP11-399J13.3ENSG00000273003.1479.3528086.715802.466608.350007.46080HepG2TAF15
RP11-399J13.3ENSG00000273003.1180.12980533.63490-1.566803.828102.58360HepG2TBRG4
RP11-399J13.3ENSG00000273003.128.19120419.26130-3.894508.582807.67590HepG2TRIM56
RP11-399J13.3ENSG00000273003.1168.41640633.91500-1.9123035.2684032.20940HepG2TUFM
RP11-399J13.3ENSG00000273003.110.95360373.99930-5.0936070.0154066.71160HepG2U2AF1
RP11-399J13.3ENSG00000273003.1282.37460670.99880-1.248702.198501.45710HepG2UBE2L3
RP11-399J13.3ENSG00000273003.156.78740209.00840-1.879902.312901.75450HepG2UTP3
RP11-399J13.3ENSG00000273003.1147.46130437.01770-1.567406.279604.73130HepG2XRCC6
RP11-399J13.3ENSG00000273003.1217.176700.0000099999.999903.895802.79610K562ATP5C1
RP11-399J13.3ENSG00000273003.116.496000.0000099999.999904.560703.55490K562CPSF6
RP11-399J13.3ENSG00000273003.168.358500.0000099999.999904.049002.96200K562DKC1
RP11-399J13.3ENSG00000273003.10.00000187.33370-99999.999993.481102.03290K562EEF2
RP11-399J13.3ENSG00000273003.10.00000180.79600-99999.999993.516202.47990K562EFTUD2
RP11-399J13.3ENSG00000273003.10.00000193.23160-99999.999993.640502.43800K562EIF3D
RP11-399J13.3ENSG00000273003.162.713700.0000099999.999904.489603.39820K562FMR1
RP11-399J13.3ENSG00000273003.176.53040180.58180-1.238505.765804.66060K562G3BP2
RP11-399J13.3ENSG00000273003.193.306400.0000099999.999904.457203.45580K562GPKOW
RP11-399J13.3ENSG00000273003.1140.1151030.239802.212004.174702.61710K562HNRNPK
RP11-399J13.3ENSG00000273003.159.79660401.34550-2.746706.974805.22080K562HNRNPL
RP11-399J13.3ENSG00000273003.1261.983400.0000099999.999907.081605.61520K562KIF1C
RP11-399J13.3ENSG00000273003.1172.671700.0000099999.9999051.6407047.93700K562MBNL1
RP11-399J13.3ENSG00000273003.1183.533800.0000099999.9999010.588508.44620K562NAA15
RP11-399J13.3ENSG00000273003.10.00000171.49370-99999.999993.480401.41320K562PES1
RP11-399J13.3ENSG00000273003.10.00000175.94420-99999.999993.528602.68090K562PRPF8
RP11-399J13.3ENSG00000273003.186.26340172.27580-0.997903.745702.05730K562RAVER1
RP11-399J13.3ENSG00000273003.10.00000178.96780-99999.999993.510502.58740K562RPS19
RP11-399J13.3ENSG00000273003.10.0000074.40100-99999.999994.494903.18020K562RPS3
RP11-399J13.3ENSG00000273003.10.00000179.62260-99999.999993.578002.05090K562RRP9
RP11-399J13.3ENSG00000273003.164.800500.0000099999.999902.661101.86100K562SF3A3
RP11-399J13.3ENSG00000273003.1186.247700.0000099999.9999031.9040028.55470K562SF3B1
RP11-399J13.3ENSG00000273003.10.00000176.02370-99999.999993.501901.62510K562SRP68
RP11-399J13.3ENSG00000273003.10.0000071.89920-99999.999994.509203.11060K562SRSF4
RP11-399J13.3ENSG00000273003.10.00000169.90300-99999.999993.524602.36290K562SUPV3L1
RP11-399J13.3ENSG00000273003.10.00000155.15020-99999.999993.262301.42950K562TFIP11
RP11-399J13.3ENSG00000273003.1119.64200180.70480-0.594902.539501.76950K562U2AF2
RP11-399J13.3ENSG00000273003.10.00000180.04610-99999.999993.575002.40530K562UCHL5
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for RP11-399J13.3 is not available on ENCORE database.






No RBPs affect the alternative splcing events of RP11-399J13.3 on ENCORE database.





The Knockdown/knockout RNA-Seq assay for RP11-399J13.3 is not avaliable on ENCORE database.