PTPRN

General Information

Gene Name       : PTPRN
Gene ID             : ENSG00000054356.13
Essential Gene : No

Functions

Localization

Domains (AlphaFold: PTPRN)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878PTPRNENSG00000054356.130.000.000.00ENCSR000AEF
HepG2PTPRNENSG00000054356.130.000.000.00ENCSR985KAT
K562PTPRNENSG00000054356.130.670.200.44ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for PTPRN is not avaliable on ENCORE database.



Proteins bound to RNA

  • NO known proteins bind on PTPRN RNA with finished eCLIP experiments on ENCORE database.





eCLIP assay for PTPRN is not avaliable on ENCORE database.






NO known proteins are bound to PTPRN RNA with finished eCLIP experiments on ENCORE database.





eCLIP assay for PTPRN is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for PTPRN is not available on ENCORE database.

  • 68 RBPs can affect the levels of PTPRN.  








The Knockdown/knockout RNA-Seq assay for PTPRN is not available on ENCORE database.





68 RBPs can affect the gene expression of PTPRN :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
PTPRNENSG00000054356.943.277903.911403.467807.043206.09570HepG2DDX6
PTPRNENSG00000054356.9170.6571046.753101.8679011.785909.38300K562ABCF1
PTPRNENSG00000054356.982.6555017.668302.225909.184008.22640K562AGGF1
PTPRNENSG00000054356.9110.7723018.385902.590806.372905.35100K562AKAP8L
PTPRNENSG00000054356.980.4192019.252602.062405.418403.45800K562BCCIP
PTPRNENSG00000054356.971.3300018.604701.938706.243104.77630K562BCLAF1
PTPRNENSG00000054356.991.8881033.280801.465104.677003.53140K562BOP1
PTPRNENSG00000054356.992.0221032.582101.497805.039003.03930K562BUD13
PTPRNENSG00000054356.976.8781021.110501.864507.039805.14470K562CCDC124
PTPRNENSG00000054356.9157.4620013.766103.5157026.5376023.46320K562CIRBP
PTPRNENSG00000054356.9156.3812065.205501.261905.961403.75480K562CKAP4
PTPRNENSG00000054356.9180.8348028.219402.679808.279106.34420K562CPEB4
PTPRNENSG00000054356.945.3247014.114401.683003.255102.09630K562CSTF2
PTPRNENSG00000054356.9166.8183055.375701.590909.126707.39960K562CELF1
PTPRNENSG00000054356.962.4060020.729801.589904.837502.87490K562DDX19B
PTPRNENSG00000054356.949.2390011.363302.115305.548504.00290K562DDX3X
PTPRNENSG00000054356.9111.2861029.219701.929209.985308.83770K562DDX47
PTPRNENSG00000054356.950.2153018.912501.408702.564701.68910K562EFTUD2
PTPRNENSG00000054356.961.9074020.221101.614103.615502.41650K562EIF3D
PTPRNENSG00000054356.9113.5927045.044301.334405.584604.27160K562EIF4G2
PTPRNENSG00000054356.955.2658016.863701.712403.911801.84890K562FAM120A
PTPRNENSG00000054356.984.8507036.003601.236703.533602.56250K562FMR1
PTPRNENSG00000054356.993.3148030.514601.612502.775601.85960K562FTO
PTPRNENSG00000054356.955.4725018.964001.548402.723801.32240K562GEMIN5
PTPRNENSG00000054356.974.5778030.531101.288404.000702.63590K562GLRX3
PTPRNENSG00000054356.9159.8768033.789502.2422014.2642012.42560K562GPKOW
PTPRNENSG00000054356.9117.7088010.437103.4953019.5369016.60300K562HNRNPF
PTPRNENSG00000054356.9123.4849012.821803.2676017.7518014.72440K562IGF2BP2
PTPRNENSG00000054356.962.3102028.847701.110902.184101.36530K562KRR1
PTPRNENSG00000054356.988.5567030.014801.560803.739701.31240K562LARP4
PTPRNENSG00000054356.9124.7205032.981701.918909.679707.96610K562METAP2
PTPRNENSG00000054356.960.2943015.318501.976605.072903.75930K562NAA15
PTPRNENSG00000054356.935.7357011.854001.591902.712201.49700K562NCBP2
PTPRNENSG00000054356.991.9416035.668401.366004.929203.97310K562NSUN2
PTPRNENSG00000054356.936.3937012.014201.598802.448401.53150K562PCBP2
PTPRNENSG00000054356.936.1538085.30430-1.238503.564802.62090K562PCBP3
PTPRNENSG00000054356.926.0833065.42710-1.326803.502002.59400K562POLR2G
PTPRNENSG00000054356.947.9621018.404801.381702.192101.52020K562PRPF8
PTPRNENSG00000054356.938.9325010.474701.894002.997302.05060K562PSIP1
PTPRNENSG00000054356.9112.6489051.221101.136904.289303.08680K562PUM2
PTPRNENSG00000054356.975.0679018.224802.042206.395405.60910K562PUS1
PTPRNENSG00000054356.973.0009012.586002.536009.977008.22770K562RBM22
PTPRNENSG00000054356.9115.4462028.352302.025606.388603.78980K562RBM39
PTPRNENSG00000054356.975.836109.565102.9869011.476209.43360K562RCC2
PTPRNENSG00000054356.954.3590018.726701.537302.919202.07840K562RPS19
PTPRNENSG00000054356.964.4270017.143101.909902.186201.30590K562RPS3
PTPRNENSG00000054356.984.8182035.346701.262703.279801.60630K562SBDS
PTPRNENSG00000054356.991.3045015.731202.537007.893205.48800K562SERBP1
PTPRNENSG00000054356.9190.9660035.189902.4400014.3426012.59930K562SF3A3
PTPRNENSG00000054356.9162.7220032.129002.3404013.8343011.58970K562SF3B1
PTPRNENSG00000054356.981.5062025.684201.665904.281502.51770K562SFPQ
PTPRNENSG00000054356.954.8128013.415902.030505.073002.33050K562SMNDC1
PTPRNENSG00000054356.931.747209.066601.807902.656601.65840K562SRFBP1
PTPRNENSG00000054356.975.1761012.852102.548209.261707.98010K562SRSF1
PTPRNENSG00000054356.933.6819012.131501.473102.498001.50770K562SRSF5
PTPRNENSG00000054356.972.5701017.782902.028805.447703.98480K562SUPV3L1
PTPRNENSG00000054356.925.7627065.63090-1.349103.724602.77290K562SYNCRIP
PTPRNENSG00000054356.966.4087016.232702.032405.982103.56590K562TFIP11
PTPRNENSG00000054356.9133.0031049.422901.428104.868403.17500K562TROVE2
PTPRNENSG00000054356.958.804906.774303.1177010.468708.90600K562U2AF2
PTPRNENSG00000054356.989.4716018.839502.247608.008406.20550K562UCHL5
PTPRNENSG00000054356.979.3268037.819701.068603.122102.36060K562UPF1
PTPRNENSG00000054356.953.5779018.487101.535003.197201.77260K562UTP18
PTPRNENSG00000054356.9201.3041045.977802.1303015.9078013.41800K562UTP3
PTPRNENSG00000054356.971.2624032.361601.138803.165602.23250K562WDR3
PTPRNENSG00000054356.9189.1852059.028701.6802012.062309.58680K562WRN
PTPRNENSG00000054356.952.2425019.213001.443002.844401.61610K562XRN2
PTPRNENSG00000054356.9134.0524056.126101.256002.284601.51220K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for PTPRN is not available on ENCORE database.






No RBPs affect the alternative splcing events of PTPRN on ENCORE database.





The Knockdown/knockout RNA-Seq assay for PTPRN is not avaliable on ENCORE database.