PRKRIR

General Information

Gene Name       : PRKRIR
Gene ID             :
Essential Gene : No

Functions

Localization

Domains (AlphaFold: PRKRIR)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for PRKRIR is not avaliable on ENCORE database.



Proteins bound to RNA
  • PRKRIR RNA is bound by 6 proteins.  







eCLIP assay for PRKRIR is not avaliable on ENCORE database.





6 proteins are bound to PRKRIR RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr117606164176061684-3'-UTR,intron-Distal4.628534.55095K562YBX3
chr117609187976091935-5'-UTR,CDS,intron-Distal4.7250010.30616HepG2DDX3X
chr117609182676091930-5'-UTR,CDS,intron-Distal4.714687.13477K562DDX3X
chr117607681576076930-CDS,intron-Distal,intron-Proximal3.275873.75245K562BUD13
chr117606340876063442-CDS,intron-Distal3.221173.09884K562LIN28B
chr117609179176091835-CDS,intron-Distal4.169917.63030HepG2DDX3X
chr117606344276063462-CDS,intron-Distal,intron-Proximal3.797733.02060K562LIN28B
chr117609179176091825-CDS,intron-Distal5.224365.82881K562DDX3X
chr117607191976072000-intron-Distal,intron-Proximal5.138506.75320K562AQR
chr117607681276076896-intron-Distal,intron-Proximal3.477363.54718K562PRPF8
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for PRKRIR is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for PRKRIR is not available on ENCORE database.

  • 86 RBPs can affect the levels of PRKRIR.  








The Knockdown/knockout RNA-Seq assay for PRKRIR is not available on ENCORE database.





86 RBPs can affect the gene expression of PRKRIR :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
PRKRIRENSG00000137492.3720.338601088.90090-0.596105.374604.33960HepG2AKAP8L
PRKRIRENSG00000137492.3919.510601281.10390-0.478402.787702.00080HepG2ASCC1
PRKRIRENSG00000137492.31501.928301179.577200.348402.955301.50580HepG2ATP5C1
PRKRIRENSG00000137492.31933.916801607.451400.266702.792802.10430HepG2AUH
PRKRIRENSG00000137492.31754.445401306.886400.424805.003704.00260HepG2CALR
PRKRIRENSG00000137492.31042.644801705.62560-0.710104.599203.32820HepG2CCAR1
PRKRIRENSG00000137492.31100.123901415.93520-0.364102.786402.09710HepG2CPSF6
PRKRIRENSG00000137492.31640.773301394.227800.234802.506301.79520HepG2DAZAP1
PRKRIRENSG00000137492.31154.18730849.275900.442504.274403.12860HepG2DDX24
PRKRIRENSG00000137492.31340.27790972.545300.462603.222801.84100HepG2DDX27
PRKRIRENSG00000137492.3902.684901483.22820-0.716405.519004.66270HepG2DDX3X
PRKRIRENSG00000137492.3865.836201273.83880-0.557004.249903.49730HepG2DDX6
PRKRIRENSG00000137492.3812.579901036.82720-0.351603.672802.91260HepG2DKC1
PRKRIRENSG00000137492.3972.31040738.354300.397002.821101.70240HepG2EFTUD2
PRKRIRENSG00000137492.3785.032901224.85490-0.641804.153003.43490HepG2EIF2S1
PRKRIRENSG00000137492.31047.83910819.674100.354202.890001.78700HepG2EIF3G
PRKRIRENSG00000137492.31014.580201317.80010-0.377201.894801.31840HepG2EIF4B
PRKRIRENSG00000137492.31240.57330827.217300.584606.793605.14290HepG2FASTKD2
PRKRIRENSG00000137492.31795.030401319.586000.443803.283402.45130HepG2FIP1L1
PRKRIRENSG00000137492.3930.475801418.36630-0.608202.262401.35190HepG2FTO
PRKRIRENSG00000137492.31032.674501365.45850-0.403002.596401.92660HepG2FXR1
PRKRIRENSG00000137492.3690.440901605.06760-1.2170019.4526017.91630HepG2GPKOW
PRKRIRENSG00000137492.3458.74720730.25710-0.670703.350102.12030HepG2GRSF1
PRKRIRENSG00000137492.3672.18910870.54860-0.373102.777602.12980HepG2HNRNPA1
PRKRIRENSG00000137492.31046.045601363.53890-0.382404.643403.74430HepG2HNRNPF
PRKRIRENSG00000137492.31027.918501282.32320-0.319001.985601.38670HepG2HNRNPK
PRKRIRENSG00000137492.3973.688301270.11140-0.383404.969704.08650HepG2HNRNPL
PRKRIRENSG00000137492.3410.836701531.74600-1.8985046.4205044.34740HepG2HNRNPLL
PRKRIRENSG00000137492.31176.07180910.588700.369003.438202.38610HepG2HNRNPM
PRKRIRENSG00000137492.31247.82560961.899300.375404.844704.06080HepG2HNRNPU
PRKRIRENSG00000137492.3976.484801342.70880-0.459504.958804.01540HepG2IGF2BP1
PRKRIRENSG00000137492.3957.232301287.83400-0.428002.412301.77680HepG2IGF2BP2
PRKRIRENSG00000137492.3762.87020982.55260-0.365104.831803.88580HepG2ILF2
PRKRIRENSG00000137492.3817.90830990.71600-0.276502.887101.85210HepG2KIF1C
PRKRIRENSG00000137492.31211.39980918.981400.398503.423002.16230HepG2LARP7
PRKRIRENSG00000137492.31276.45840921.998600.469203.699501.72180HepG2LSM11
PRKRIRENSG00000137492.3486.03490953.90060-0.972805.657504.05940HepG2NONO
PRKRIRENSG00000137492.31416.26420975.832700.537309.182207.89110HepG2PRPF4
PRKRIRENSG00000137492.3992.90220802.064500.307802.234101.50540HepG2PRPF8
PRKRIRENSG00000137492.31105.989001319.64720-0.254801.969601.45500HepG2PUF60
PRKRIRENSG00000137492.31824.505301324.126600.462406.196905.31440HepG2QKI
PRKRIRENSG00000137492.31388.358601013.843500.453402.030901.41820HepG2RAVER1
PRKRIRENSG00000137492.32005.768701654.892700.277302.594701.76260HepG2RBM15
PRKRIRENSG00000137492.31971.908901542.472700.354204.413903.79960HepG2RBM22
PRKRIRENSG00000137492.31106.723401468.68320-0.408203.483402.73050HepG2RPLP0
PRKRIRENSG00000137492.31576.024301102.655800.515202.919301.35360HepG2RTF1
PRKRIRENSG00000137492.31937.008501516.122900.353302.926202.20000HepG2SF3B1
PRKRIRENSG00000137492.3730.898101032.96420-0.499003.063502.05210HepG2SMNDC1
PRKRIRENSG00000137492.31106.273301686.95370-0.608703.950203.00800HepG2SNRNP70
PRKRIRENSG00000137492.32105.816801742.214200.273403.146302.62400HepG2SRFBP1
PRKRIRENSG00000137492.31045.320301339.58990-0.357803.440902.67670HepG2SRSF7
PRKRIRENSG00000137492.3661.187801512.73820-1.1940019.5596018.46180HepG2SSB
PRKRIRENSG00000137492.3661.23720891.22610-0.430603.430002.39100HepG2SUPT6H
PRKRIRENSG00000137492.3599.191901034.63550-0.788004.173203.36740HepG2SUPV3L1
PRKRIRENSG00000137492.3865.931401492.99230-0.7859010.887009.59130HepG2TARDBP
PRKRIRENSG00000137492.3706.07780934.75890-0.404803.874903.30430HepG2TIAL1
PRKRIRENSG00000137492.3732.41800943.01410-0.364604.037203.38140HepG2TRIM56
PRKRIRENSG00000137492.31394.267901128.938500.304402.009401.46510HepG2U2AF1
PRKRIRENSG00000137492.3890.481301265.00660-0.506508.493307.38070HepG2UPF1
PRKRIRENSG00000137492.3629.29600996.71440-0.663404.281202.70390HepG2XRCC5
PRKRIRENSG00000137492.31226.086801391.27190-0.182301.860401.38750HepG2ZNF622
PRKRIRENSG00000137492.32816.136502204.687600.353005.764004.99270K562AGGF1
PRKRIRENSG00000137492.31650.103701998.42410-0.276303.588802.49030K562BCLAF1
PRKRIRENSG00000137492.32017.478302493.80160-0.305802.338601.54240K562BOP1
PRKRIRENSG00000137492.31853.510302378.34070-0.359702.649201.39960K562CIRBP
PRKRIRENSG00000137492.31962.616702651.62780-0.434105.656304.54370K562CPSF6
PRKRIRENSG00000137492.31256.698901516.10240-0.270702.314401.36470K562CSTF2
PRKRIRENSG00000137492.34577.543303756.686900.285004.753003.93220K562DDX47
PRKRIRENSG00000137492.32886.111302468.830100.225202.253601.47420K562DKC1
PRKRIRENSG00000137492.31432.242201703.26580-0.250002.750601.54720K562EIF2S1
PRKRIRENSG00000137492.32144.514502805.03700-0.387403.508202.71390K562EIF2S2
PRKRIRENSG00000137492.32283.971701823.489100.324703.961403.01720K562EIF3G
PRKRIRENSG00000137492.32497.101703056.56390-0.291702.346501.56540K562FIP1L1
PRKRIRENSG00000137492.31683.001302286.76860-0.442304.022102.90530K562FTO
PRKRIRENSG00000137492.32185.414401684.827100.375205.446104.63670K562FXR1
PRKRIRENSG00000137492.32874.783001843.417800.641005.688404.59180K562G3BP2
PRKRIRENSG00000137492.31506.754802531.65290-0.7486012.9457011.20780K562GPKOW
PRKRIRENSG00000137492.32302.578203738.36270-0.699206.693805.51110K562GRSF1
PRKRIRENSG00000137492.31177.502101780.66070-0.596704.932904.15840K562HNRNPC
PRKRIRENSG00000137492.32779.623503394.93090-0.288502.773301.71750K562HNRNPL
PRKRIRENSG00000137492.33183.201602513.914600.340402.419801.55250K562HNRNPM
PRKRIRENSG00000137492.33431.470402727.458300.331203.137302.15930K562MBNL1
PRKRIRENSG00000137492.31916.321102407.89760-0.329405.169304.08750K562MTPAP
PRKRIRENSG00000137492.33007.291801911.736600.653502.965602.04770K562NAA15
PRKRIRENSG00000137492.32285.955602675.55950-0.227003.003402.22990K562NSUN2
PRKRIRENSG00000137492.32783.669503469.58420-0.317802.655001.85560K562PPIG
PRKRIRENSG00000137492.32406.682201644.420600.549405.420804.36690K562PRPF8
PRKRIRENSG00000137492.31082.751101596.45970-0.560203.259502.26550K562PSIP1
PRKRIRENSG00000137492.35861.162204911.542700.254903.411202.21940K562PUM1
PRKRIRENSG00000137492.33571.743402275.378300.650408.837007.91490K562PUS1
PRKRIRENSG00000137492.33240.169102216.741000.5475010.490809.36070K562RBM15
PRKRIRENSG00000137492.31144.747301456.13330-0.347102.310001.40870K562RCC2
PRKRIRENSG00000137492.31506.820302221.07690-0.559806.203405.15430K562SRSF1
PRKRIRENSG00000137492.31614.330102097.35670-0.377602.763401.71540K562SRSF5
PRKRIRENSG00000137492.31715.056402044.36750-0.253402.802601.62810K562SRSF7
PRKRIRENSG00000137492.32453.560601623.880500.5953010.353108.75750K562SYNCRIP
PRKRIRENSG00000137492.31612.506402168.50200-0.427403.649402.69020K562TIA1
PRKRIRENSG00000137492.3991.501901535.57930-0.631105.205303.87880K562TIAL1
PRKRIRENSG00000137492.31722.278402127.36200-0.304702.494701.46970K562TRA2A
PRKRIRENSG00000137492.31142.160001630.87530-0.513904.471003.20430K562TRIM56
PRKRIRENSG00000137492.32402.364302836.93900-0.239902.248601.59660K562UPF1
PRKRIRENSG00000137492.33245.602702524.169300.362606.679905.41810K562WDR43
PRKRIRENSG00000137492.33270.305804016.87460-0.296602.803501.93310K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for PRKRIR is not available on ENCORE database.





13 RBPs can affect the splicing of PRKRIR :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEPRKRIRENSG00000137492.3chr11-760753817607547676071999760721077607689576077016-0.089000.001870.03471excludedK562SF3B4
SEPRKRIRENSG00000137492.3chr11-7607538176075476760719997607210776076895760770160.205000.000000.01437includedHepG2TROVE2
SEPRKRIRENSG00000137492.3chr11-7606660376066698760636687606383876071999760720960.086000.001320.09442includedHepG2QKI
SEPRKRIRENSG00000137492.3chr11-7607538176075476760719997607210776076895760770160.198000.000200.02211includedHepG2DDX3X
SEPRKRIRENSG00000137492.3chr11-760753817607547676071999760721077607689576077016-0.173000.000010.02479excludedK562EWSR1
SEPRKRIRENSG00000137492.3chr11-760753817607547676071999760721077607689576077016-0.121000.000000.00000excludedK562PUS1
SEPRKRIRENSG00000137492.3chr11-760753817607547676071999760721077607689576077016-0.079000.005300.08487excludedK562U2AF1
SEPRKRIRENSG00000137492.3chr11-760753817607547676071999760721077607689576077016-0.086000.000210.01040excludedK562UTP18
SEPRKRIRENSG00000137492.3chr11-760753817607547676071999760721077607689576077016-0.098000.000020.00115excludedK562RBM15
SEPRKRIRENSG00000137492.3chr11-760753817607547676071999760721077607689576077016-0.105000.000000.00028excludedK562AGGF1
SEPRKRIRENSG00000137492.3chr11-7607538176075476760719997607210776076895760770160.260000.000000.00000includedK562HNRNPC
A3SSPRKRIRENSG00000137492.3chr11-7606660376066808760666037606669876071999760721420.065000.000000.00000longerK562AQR
A3SSPRKRIRENSG00000137492.3chr11-7607199976072172760719997607210776076895760770160.052000.004780.02776longerK562AQR
MXEPRKRIRENSG00000137492.3chr11-7607392576074019760753817607547676071999760721077607689576077016-0.053000.003350.090462includedK562AGGF1
MXEPRKRIRENSG00000137492.3chr11-76066661760666987607199976072107760609997606383876076895760770160.106000.005840.034381includedHepG2U2AF2
MXEPRKRIRENSG00000137492.3chr11-76071999760721077607538176075476760666617606669876076895760770160.152000.000100.008621includedHepG2DDX3X

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for PRKRIR is not avaliable on ENCORE database.