PRKCI

General Information

Gene Name       : PRKCI
Gene ID             : ENSG00000163558.12
Essential Gene : No

Functions

Localization

Domains (AlphaFold: PRKCI)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878PRKCIENSG00000163558.129.958.429.18ENCSR000AEF
HepG2PRKCIENSG00000163558.128.0618.0513.05ENCSR985KAT
K562PRKCIENSG00000163558.1217.4821.1319.30ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for PRKCI is not avaliable on ENCORE database.



Proteins bound to RNA
  • PRKCI RNA is bound by 14 proteins.  







eCLIP assay for PRKCI is not avaliable on ENCORE database.





14 proteins are bound to PRKCI RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr3170023027170023103+3'-UTR3.060664.72944K562FAM120A
chr3170020957170021106+3'-UTR4.328135.33201K562IGF2BP1
chr3170021451170021538+3'-UTR3.939886.56370K562FAM120A
chr3169940230169940419+5'-UTR4.3914610.17596K562DDX3X
chr3169991019169991161+CDS,intron-Proximal4.244456.53298K562SF3B4
chr3170011156170011223+CDS,intron-Proximal3.828394.77518HepG2U2AF2
chr3169985745169985776+CDS3.648365.95764K562YBX3
chr3169985776169985789+CDS,intron-Proximal3.749559.54328K562YBX3
chr3169988208169988214+CDS,intron-Proximal3.543578.04783K562YBX3
chr3169988214169988256+CDS3.745059.98187K562YBX3
chr3170011208170011283+CDS3.441469.10791K562LIN28B
chr3169940684169940776+intron-Distal5.289836.15027K562EFTUD2
chr3169962629169962643+intron-Distal7.50751102.68433K562TROVE2
chr3169962598169962611+intron-Distal5.032839.98650K562TROVE2
chr3169962655169962669+intron-Distal4.577346.41561K562TIA1
chr3170008578170008673+intron-Distal4.043704.77518HepG2U2AF2
chr3169959060169959171+intron-Distal4.718805.05488HepG2QKI
chr3169947109169947129+intron-Distal4.464325.63065K562HNRNPL
chr3169940672169940796+intron-Distal4.210123.77360K562GTF2F1
chr3169947129169947173+intron-Distal3.822426.68143K562HNRNPL
chr3169962643169962666+intron-Distal7.0521783.38074K562TROVE2
chr3169962624169962655+intron-Distal4.577346.41561K562TIA1
chr3170008493170008548+intron-Distal4.091993.24603K562KHSRP
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for PRKCI is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for PRKCI is not available on ENCORE database.

  • 85 RBPs can affect the levels of PRKCI.  








The Knockdown/knockout RNA-Seq assay for PRKCI is not available on ENCORE database.





85 RBPs can affect the gene expression of PRKCI :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
PRKCIENSG00000163558.81015.310701193.75410-0.233602.279901.71800HepG2ACO1
PRKCIENSG00000163558.8683.469301009.37380-0.562503.839502.68690HepG2ADAR
PRKCIENSG00000163558.8945.995301199.38620-0.342403.509002.65740HepG2AKAP8L
PRKCIENSG00000163558.8974.150101301.73920-0.418203.083002.25580HepG2ASCC1
PRKCIENSG00000163558.8746.512101438.90200-0.9467015.4695014.21540HepG2BOP1
PRKCIENSG00000163558.81683.689501341.970400.327203.149802.33110HepG2CALR
PRKCIENSG00000163558.8989.935301236.73860-0.321102.041201.37050HepG2CIRBP
PRKCIENSG00000163558.8700.545801193.52290-0.7687018.5283017.13920HepG2CKAP4
PRKCIENSG00000163558.8916.561401291.71400-0.495005.063703.59520HepG2CPSF7
PRKCIENSG00000163558.81051.954301348.82110-0.358604.285503.51670HepG2CELF1
PRKCIENSG00000163558.81135.392601450.36990-0.353205.581504.57930HepG2DAZAP1
PRKCIENSG00000163558.8796.487701142.10650-0.520007.544006.52770HepG2DKC1
PRKCIENSG00000163558.8853.494501007.34690-0.239102.355901.74430HepG2DNAJC2
PRKCIENSG00000163558.8856.332501189.82880-0.474504.864703.33920HepG2EIF2S2
PRKCIENSG00000163558.8687.032301375.38600-1.0014012.3829011.06140HepG2EIF4A3
PRKCIENSG00000163558.81232.127401430.83060-0.215702.072601.33040HepG2EIF4G1
PRKCIENSG00000163558.81788.724101370.652900.384003.223802.34770HepG2EIF4G2
PRKCIENSG00000163558.81059.295801387.63170-0.389502.813602.11520HepG2FXR1
PRKCIENSG00000163558.8746.382101287.27140-0.786308.528107.39380HepG2G3BP1
PRKCIENSG00000163558.81002.680201366.55190-0.446703.621402.59490HepG2G3BP2
PRKCIENSG00000163558.81013.111201497.51540-0.563804.902704.06650HepG2GPKOW
PRKCIENSG00000163558.8650.58130911.95690-0.487202.614701.53680HepG2GRSF1
PRKCIENSG00000163558.8595.562501026.18000-0.785007.647506.65460HepG2HNRNPA1
PRKCIENSG00000163558.8882.261901141.39530-0.371502.866302.16190HepG2HNRNPC
PRKCIENSG00000163558.8867.765201303.38660-0.586906.040305.03760HepG2HNRNPK
PRKCIENSG00000163558.8901.925801321.19300-0.5508011.3227010.04160HepG2HNRNPL
PRKCIENSG00000163558.8800.394101133.85200-0.502407.791806.81290HepG2HNRNPU
PRKCIENSG00000163558.8865.529601147.11600-0.406404.272403.38950HepG2IGF2BP1
PRKCIENSG00000163558.8889.411801308.49730-0.557005.027604.14190HepG2IGF2BP2
PRKCIENSG00000163558.8950.494101158.19920-0.285103.253802.46500HepG2ILF2
PRKCIENSG00000163558.81412.353502138.89270-0.598803.639402.68790HepG2LARP4
PRKCIENSG00000163558.8888.570601388.11580-0.643606.410705.42220HepG2MAGOH
PRKCIENSG00000163558.8995.136201428.78830-0.521804.303703.52020HepG2NCBP2
PRKCIENSG00000163558.81012.347101438.18080-0.506507.041705.83460HepG2NOL12
PRKCIENSG00000163558.8692.954801272.47480-0.8768010.798609.39460HepG2PABPC4
PRKCIENSG00000163558.8818.153501122.36970-0.456104.304603.27680HepG2PARN
PRKCIENSG00000163558.8948.641201192.11280-0.329603.624902.94990HepG2PCBP1
PRKCIENSG00000163558.8835.997801011.31240-0.274702.315501.63440HepG2PPIL4
PRKCIENSG00000163558.8770.474801372.85390-0.8334013.3467012.16800HepG2PUF60
PRKCIENSG00000163558.81231.458801457.32670-0.243002.877902.27600HepG2PUM1
PRKCIENSG00000163558.81190.535501456.27360-0.290702.602001.95100HepG2PUM2
PRKCIENSG00000163558.8933.587501215.92010-0.381205.257304.45760HepG2PUS1
PRKCIENSG00000163558.8640.748601192.29080-0.8959014.6906013.20260HepG2RBM25
PRKCIENSG00000163558.8681.374201127.47940-0.726603.171902.10560HepG2RBM27
PRKCIENSG00000163558.8736.84580989.08790-0.424702.300101.56950HepG2RPS3A
PRKCIENSG00000163558.81368.740201009.769100.438707.207406.23800HepG2SAFB2
PRKCIENSG00000163558.8991.726901542.28880-0.637105.173104.23260HepG2SF3A3
PRKCIENSG00000163558.81002.886701414.55720-0.496204.877703.96310HepG2SF3B1
PRKCIENSG00000163558.81175.774901573.93270-0.420802.102001.42430HepG2SNRNP70
PRKCIENSG00000163558.82315.937801718.065600.430709.068208.30490HepG2SRFBP1
PRKCIENSG00000163558.81568.196601318.203000.250402.739802.26830HepG2SRSF1
PRKCIENSG00000163558.8961.742901355.47130-0.495108.068907.07180HepG2SRSF5
PRKCIENSG00000163558.81204.792801491.75520-0.308203.334402.78280HepG2SSB
PRKCIENSG00000163558.8924.385301523.42490-0.720802.810601.73510HepG2TBRG4
PRKCIENSG00000163558.8927.371501101.89990-0.248801.844501.41820HepG2TIAL1
PRKCIENSG00000163558.8639.353301111.58820-0.7979016.7112015.48130HepG2TRIM56
PRKCIENSG00000163558.81005.915601341.19020-0.415004.154603.05850HepG2TUFM
PRKCIENSG00000163558.81066.814501367.78030-0.358503.141002.40610HepG2UPF1
PRKCIENSG00000163558.8813.729801141.00450-0.487707.913306.87460HepG2ZC3H8
PRKCIENSG00000163558.81182.885401504.28810-0.346803.150402.57900HepG2ZNF622
PRKCIENSG00000163558.82548.473202241.166300.185302.003201.50540K562AGGF1
PRKCIENSG00000163558.81775.146202341.96730-0.399803.781503.11660K562AQR
PRKCIENSG00000163558.81500.458401864.44480-0.313302.276901.49200K562BOP1
PRKCIENSG00000163558.8807.149401053.98460-0.384903.750802.49580K562CSTF2
PRKCIENSG00000163558.83460.773102937.691600.236303.184202.49260K562DDX47
PRKCIENSG00000163558.8891.750601277.39900-0.518504.108002.05880K562DDX51
PRKCIENSG00000163558.83059.466002509.473200.285803.696802.66300K562DKC1
PRKCIENSG00000163558.81424.493801754.25440-0.300403.754902.32410K562EIF2S1
PRKCIENSG00000163558.81205.996601741.57520-0.530209.087507.89800K562EIF2S2
PRKCIENSG00000163558.81108.817301668.63150-0.589607.526906.17560K562EIF4A3
PRKCIENSG00000163558.81122.936001502.64550-0.420205.435703.73620K562EIF4B
PRKCIENSG00000163558.81726.192602148.84250-0.316002.602601.78100K562FIP1L1
PRKCIENSG00000163558.81319.821701735.29800-0.394805.547604.73180K562FXR1
PRKCIENSG00000163558.81727.805602320.89660-0.425704.979503.96720K562GRSF1
PRKCIENSG00000163558.81321.355201658.22290-0.327602.808501.72940K562HNRNPA1
PRKCIENSG00000163558.81083.872201659.05120-0.614208.459707.46670K562HNRNPC
PRKCIENSG00000163558.81176.863201481.46430-0.332102.700901.57510K562HNRNPF
PRKCIENSG00000163558.82072.080102654.98380-0.357603.790102.52600K562HNRNPL
PRKCIENSG00000163558.81569.647702078.49280-0.405102.352801.50820K562MATR3
PRKCIENSG00000163558.81253.500501847.53430-0.559607.241505.78600K562METAP2
PRKCIENSG00000163558.81480.632001971.38860-0.413007.438006.16830K562MTPAP
PRKCIENSG00000163558.81165.463201633.38610-0.487004.049502.17080K562NUSAP1
PRKCIENSG00000163558.81243.786201619.69480-0.381002.970201.48470K562PHF6
PRKCIENSG00000163558.81901.122902439.34300-0.359603.225102.32740K562PPIG
PRKCIENSG00000163558.81107.182401487.49360-0.426004.100302.96910K562PSIP1
PRKCIENSG00000163558.81429.583202023.22360-0.501103.250302.53660K562PTBP1
PRKCIENSG00000163558.82549.214903255.25590-0.352703.379602.47770K562PUF60
PRKCIENSG00000163558.82776.720102312.782300.263701.810601.35290K562PUS1
PRKCIENSG00000163558.82726.401602253.416300.274803.129202.50440K562RBM15
PRKCIENSG00000163558.81096.941401940.68540-0.823106.218404.89390K562RBM22
PRKCIENSG00000163558.81404.425901727.76000-0.298902.584301.30850K562RBM25
PRKCIENSG00000163558.81455.078601862.46640-0.356102.420001.49020K562RPS3
PRKCIENSG00000163558.81561.074502161.33150-0.469405.700304.56120K562SF3A3
PRKCIENSG00000163558.81562.540801894.00610-0.277502.575701.75330K562SF3B4
PRKCIENSG00000163558.8957.627401286.45750-0.425903.689502.45810K562SRFBP1
PRKCIENSG00000163558.81332.111001798.26750-0.432903.423802.23690K562SRSF4
PRKCIENSG00000163558.81576.852801276.061900.305202.499101.72080K562SYNCRIP
PRKCIENSG00000163558.81210.292402007.51820-0.730104.908803.95230K562TARDBP
PRKCIENSG00000163558.81316.878801936.40180-0.556303.814902.83210K562TIA1
PRKCIENSG00000163558.81241.136701519.86170-0.292302.125401.31200K562TRIM56
PRKCIENSG00000163558.82033.369102322.56410-0.191802.168601.52740K562UPF1
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for PRKCI is not available on ENCORE database.





2 RBPs can affect the splicing of PRKCI :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEPRKCIENSG00000163558.8chr3+169985702169985788169981166169981217169988208169988349-0.084000.000700.00904excludedK562AQR
SEPRKCIENSG00000163558.8chr3+170009641170009729170002248170002384170011170170011296-0.060000.001810.02778excludedK562PUS1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for PRKCI is not avaliable on ENCORE database.