POMGNT1

General Information

Gene Name       : POMGNT1
Gene ID             : ENSG00000085998.13
Essential Gene : No

Functions

Localization

Domains (AlphaFold: POMGNT1)


Antibody Validation


Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878POMGNT1ENSG00000085998.1310.1017.1613.63ENCSR000AEF
HepG2POMGNT1ENSG00000085998.1333.5428.7231.13ENCSR985KAT
K562POMGNT1ENSG00000085998.1332.9532.1832.56ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for POMGNT1 is not avaliable on ENCORE database.



Proteins bound to RNA

  • POMGNT1 RNA is bound by 15 proteins.  







eCLIP assay for POMGNT1 is not avaliable on ENCORE database.





15 proteins are bound to POMGNT1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr14665476346654813-3'-UTR,intron-Distal3.802566.14390K562PABPC4
chr14665917646659232-3'-UTR,intron-Distal,intron-Proximal4.126926.75344HepG2EFTUD2
chr14665919046659244-3'-UTR,CDS,intron-Distal,intron-Proximal3.763653.88924K562PRPF8
chr14665475946654819-3'-UTR,intron-Distal,intron-Proximal4.6167310.35451HepG2QKI
chr14665635646656417-3'-UTR,CDS,intron-Distal,intron-Proximal4.911554.68690HepG2PRPF8
chr14665482246654866-3'-UTR,intron-Distal,intron-Proximal5.022158.64807HepG2LIN28B
chr14665994546660008-3'-UTR,CDS,intron-Distal,intron-Proximal3.327744.77136HepG2PPIG
chr14665459146654654-3'-UTR,CDS,intron-Distal4.572025.29129HepG2DDX55
chr14665857146658625-3'-UTR,CDS,intron-Distal,intron-Proximal5.639485.93845K562DDX24
chr14665797846658048-3'-UTR,CDS,intron-Distal,intron-Proximal4.642926.93329K562DDX24
chr14665470346654738-3'-UTR,intron-Distal3.586093.83987K562PABPC4
chr14665946446659542-3'-UTR,CDS,intron-Distal,intron-Proximal4.0507210.26009K562PRPF8
chr14666337346663544-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal4.5004915.95983K562DDX3X
chr14665457146654627-3'-UTR,CDS,intron-Distal4.352226.76918K562DDX55
chr14665451946654566-3'-UTR,CDS,intron-Distal3.223323.75706HepG2LSM11
chr14665903646659112-3'-UTR,CDS,intron-Distal,intron-Proximal4.059623.71613K562UCHL5
chr14666340646663541-3'-UTR,5'-UTR,CDS,intron-Distal4.4109918.59875HepG2DDX3X
chr14665610646656155-3'-UTR,CDS,intron-Distal,intron-Proximal3.221835.28960K562AQR
chr14665772346657786-3'-UTR,CDS,intron-Distal,intron-Proximal4.368549.61107HepG2PRPF8
chr14665514746655204-3'-UTR,CDS,intron-Distal,intron-Proximal3.691183.59112HepG2PPIG
chr14665820646658263-3'-UTR,CDS,intron-Distal,intron-Proximal4.468965.23082K562DDX24
chr14665458146654631-3'-UTR,CDS,intron-Distal5.400769.39648K562PABPC4
chr14665884746658881-3'-UTR,CDS,intron-Distal,intron-Proximal4.260994.16174HepG2PRPF8
chr14665617946656210-3'-UTR,CDS,intron-Distal,intron-Proximal3.699634.00320K562AQR
chr14665462746654668-3'-UTR,CDS,intron-Distal4.901425.53579K562DDX55
chr14665552646655627-3'-UTR,CDS,intron-Distal3.238704.06531HepG2GRWD1
chr14665563546655698-3'-UTR,CDS,intron-Distal,intron-Proximal4.243366.39176K562AQR
chr14665899746659039-3'-UTR,CDS,intron-Distal,intron-Proximal3.915933.18234K562BUD13
chr14665798146658011-3'-UTR,CDS,intron-Distal,intron-Proximal4.077363.49905HepG2PPIG
chr14665819446658259-3'-UTR,CDS,intron-Distal,intron-Proximal4.783954.67689HepG2PPIG
chr14665919446659251-3'-UTR,CDS,intron-Distal,intron-Proximal4.2172611.70689HepG2PRPF8
chr14665948646659555-3'-UTR,CDS,intron-Distal,intron-Proximal5.2524613.10719HepG2PRPF8
chr14665906346659120-3'-UTR,intron-Distal,intron-Proximal4.675357.61488HepG2EFTUD2
chr14665906546659109-3'-UTR,intron-Distal,intron-Proximal4.401035.95597K562EFTUD2
chr14665470046654745-3'-UTR,intron-Distal4.308486.30421K562DDX55
chr14665902546659107-3'-UTR,CDS,intron-Distal,intron-Proximal3.283455.67192K562SF3B4
chr14665902446659122-3'-UTR,CDS,intron-Distal,intron-Proximal4.6235810.41441K562DDX24
chr14665854246658597-3'-UTR,CDS,intron-Distal,intron-Proximal3.291914.98422K562PRPF8
chr14665611746656191-3'-UTR,CDS,intron-Distal,intron-Proximal3.847676.08301HepG2EFTUD2
chr14665463146654676-3'-UTR,CDS,intron-Distal5.045527.90397K562PABPC4
chr14665853046658600-3'-UTR,CDS,intron-Distal,intron-Proximal3.717267.56654HepG2PRPF8
chr14666400946664100-5'-UTR,intron-Distal,intron-Proximal4.688885.88953K562DDX3X
chr14666400546664118-5'-UTR,intron-Distal,intron-Proximal3.8625510.26041HepG2DDX3X
chr14666030746660393-CDS,intron-Distal,intron-Proximal4.556758.30573K562AQR
chr14666168246661719-CDS,intron-Distal,intron-Proximal3.590124.68902HepG2PPIG
chr14666031746660372-CDS,intron-Distal,intron-Proximal4.454493.37579K562EFTUD2
chr14666168146661750-CDS,intron-Distal,intron-Proximal5.559255.93845K562DDX24
chr14666143846661518-CDS,intron-Distal,intron-Proximal3.358333.69193HepG2PRPF8
chr14665878846658832-intron-Distal,intron-Proximal4.348785.64484HepG2PRPF8
chr14665877546658821-intron-Distal,intron-Proximal4.660705.33214K562PRPF8
chr14665852546658572-intron-Distal,intron-Proximal3.475903.94787K562AQR
chr14665621346656281-intron-Distal,intron-Proximal4.477146.01148HepG2EFTUD2
chr14665789546657925-intron-Distal,intron-Proximal5.477144.75571HepG2EFTUD2
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for POMGNT1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for POMGNT1 is not available on ENCORE database.

  • 71 RBPs can affect the levels of POMGNT1.  








The Knockdown/knockout RNA-Seq assay for POMGNT1 is not available on ENCORE database.





71 RBPs can affect the gene expression of POMGNT1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
POMGNT1ENSG00000085998.9782.708301109.87610-0.503907.981307.05740HepG2ACO1
POMGNT1ENSG00000085998.9681.97250928.25090-0.444803.363902.27180HepG2ADAR
POMGNT1ENSG00000085998.92693.042201782.430200.595305.608304.88210HepG2AKAP1
POMGNT1ENSG00000085998.91900.742701577.323600.269003.049002.33330HepG2AUH
POMGNT1ENSG00000085998.91236.09360833.243200.568904.914003.74600HepG2BCLAF1
POMGNT1ENSG00000085998.91001.637501401.17480-0.484304.166303.22830HepG2CIRBP
POMGNT1ENSG00000085998.9878.10600696.458900.334301.987301.39390HepG2CPSF6
POMGNT1ENSG00000085998.91820.464201326.034700.457107.788306.81230HepG2CELF1
POMGNT1ENSG00000085998.9646.26020924.82110-0.517105.137103.88420HepG2DDX24
POMGNT1ENSG00000085998.91210.70160942.815300.360702.137801.45010HepG2DDX55
POMGNT1ENSG00000085998.92028.822701466.707800.468003.688602.98380HepG2DDX6
POMGNT1ENSG00000085998.91124.36690926.431800.279303.234102.53880HepG2DNAJC2
POMGNT1ENSG00000085998.91760.885001290.449600.448303.030402.22830HepG2FIP1L1
POMGNT1ENSG00000085998.91353.56660984.917100.458602.648201.55560HepG2FUS
POMGNT1ENSG00000085998.91010.403101458.42130-0.529504.437503.60370HepG2G3BP1
POMGNT1ENSG00000085998.9427.79900789.46300-0.883908.597307.51170HepG2GPKOW
POMGNT1ENSG00000085998.91262.524801059.662900.252602.547501.60470HepG2HDGF
POMGNT1ENSG00000085998.91332.357501042.711300.353504.513903.75580HepG2HNRNPU
POMGNT1ENSG00000085998.91194.003801482.45890-0.312201.947501.37180HepG2IGF2BP2
POMGNT1ENSG00000085998.9810.694101581.51260-0.9641012.1724010.91430HepG2MATR3
POMGNT1ENSG00000085998.91355.663301044.076200.376703.058702.20850HepG2MSI2
POMGNT1ENSG00000085998.9523.84690668.05450-0.350802.029801.38450HepG2NSUN2
POMGNT1ENSG00000085998.91248.651401516.31470-0.280203.287702.63750HepG2PCBP1
POMGNT1ENSG00000085998.9359.87870727.34360-1.0151010.872909.41380HepG2PRPF8
POMGNT1ENSG00000085998.91362.360201130.492600.269103.110302.46530HepG2PUS1
POMGNT1ENSG00000085998.9498.85340899.50050-0.850505.307604.34790HepG2RAVER1
POMGNT1ENSG00000085998.91160.313101513.69560-0.383604.809504.17370HepG2RBM22
POMGNT1ENSG00000085998.91857.079401516.551700.292102.449101.81090HepG2RBM25
POMGNT1ENSG00000085998.9525.274901171.31790-1.1570018.8651016.31970HepG2RBM27
POMGNT1ENSG00000085998.91195.756101717.09530-0.522009.530808.63560HepG2NELFE
POMGNT1ENSG00000085998.9870.924001599.17710-0.8767023.3728021.88870HepG2RECQL
POMGNT1ENSG00000085998.9952.62650719.497000.404802.489401.74070HepG2RRP9
POMGNT1ENSG00000085998.91183.91770928.586800.350404.481103.69450HepG2SAFB2
POMGNT1ENSG00000085998.9672.071901173.19940-0.803806.354905.30920HepG2SF3A3
POMGNT1ENSG00000085998.91334.781901606.39700-0.267203.016102.40200HepG2SF3B4
POMGNT1ENSG00000085998.91300.04260918.188600.501603.219902.17740HepG2SMNDC1
POMGNT1ENSG00000085998.91101.710901676.69970-0.6059013.0484012.18560HepG2SRSF1
POMGNT1ENSG00000085998.91514.212301282.205900.239802.804002.10350HepG2SRSF7
POMGNT1ENSG00000085998.9788.921501364.05780-0.7900019.3872018.16850HepG2SRSF9
POMGNT1ENSG00000085998.91158.532101484.31190-0.357505.044704.39270HepG2SSB
POMGNT1ENSG00000085998.91788.726201515.323700.239203.356802.68480HepG2SUCLG1
POMGNT1ENSG00000085998.91182.68930871.090900.441103.881602.77990HepG2SUPT6H
POMGNT1ENSG00000085998.91437.658801022.243500.491908.643707.73330HepG2TRIM56
POMGNT1ENSG00000085998.9620.045301103.70820-0.8319010.476209.23410HepG2U2AF1
POMGNT1ENSG00000085998.9403.85740554.44910-0.457202.712301.96000HepG2UCHL5
POMGNT1ENSG00000085998.9798.802701004.51100-0.330603.365902.71770HepG2UTP3
POMGNT1ENSG00000085998.9825.74830975.58170-0.240602.187101.57960HepG2ZC3H8
POMGNT1ENSG00000085998.91624.984901284.930500.338602.630201.44760K562ABCF1
POMGNT1ENSG00000085998.91241.906801029.976700.269802.661302.10120K562AGGF1
POMGNT1ENSG00000085998.9997.243901498.83760-0.587806.680605.83300K562AQR
POMGNT1ENSG00000085998.9780.95370585.779300.414803.311102.45100K562CPSF6
POMGNT1ENSG00000085998.92727.218202342.138600.219502.189701.32340K562CELF1
POMGNT1ENSG00000085998.91029.18580634.699800.697309.095707.08860K562DDX3X
POMGNT1ENSG00000085998.91778.464501267.020300.489105.577404.69990K562DDX47
POMGNT1ENSG00000085998.9872.03830643.482900.438404.447802.66300K562DDX6
POMGNT1ENSG00000085998.9800.63040506.511200.660408.501107.11030K562EIF3G
POMGNT1ENSG00000085998.9891.99290663.074500.427803.319602.42500K562EIF4A3
POMGNT1ENSG00000085998.9810.75720597.105900.441204.308102.81000K562EIF4B
POMGNT1ENSG00000085998.92249.235901905.015000.239502.862301.90790K562EIF4G2
POMGNT1ENSG00000085998.91142.21170923.724100.306202.128001.38060K562FIP1L1
POMGNT1ENSG00000085998.9568.14530856.68190-0.592504.883303.31580K562FKBP4
POMGNT1ENSG00000085998.9759.36240596.044900.349302.054501.31390K562FMR1
POMGNT1ENSG00000085998.9672.76710505.214100.413102.440001.58450K562FTO
POMGNT1ENSG00000085998.91109.48750689.564400.6860010.699709.59440K562FXR1
POMGNT1ENSG00000085998.9218.93700479.85230-1.132107.779506.46710K562G3BP2
POMGNT1ENSG00000085998.92335.127001813.781800.364403.800902.91950K562GRSF1
POMGNT1ENSG00000085998.91060.04830759.815600.480303.522502.45950K562HNRNPM
POMGNT1ENSG00000085998.91624.462501252.318700.375303.178102.32930K562HSPD1
POMGNT1ENSG00000085998.9908.23390738.690300.298002.045501.31830K562MAGOH
POMGNT1ENSG00000085998.9761.88670545.908400.480803.882802.83350K562METAP2
POMGNT1ENSG00000085998.91574.050402030.59220-0.367403.003301.82460K562MSI2
POMGNT1ENSG00000085998.9851.699901413.21230-0.730608.107106.68590K562PCBP3
POMGNT1ENSG00000085998.9765.624401083.98240-0.501605.539204.40740K562POLR2G
POMGNT1ENSG00000085998.91328.603801048.666300.341302.589901.80030K562PPIG
POMGNT1ENSG00000085998.91055.32100717.708500.556106.572505.58320K562PTBP1
POMGNT1ENSG00000085998.91670.441602078.54400-0.315302.178901.45640K562PUF60
POMGNT1ENSG00000085998.9381.77890703.63070-0.8821011.111209.70720K562SRSF1
POMGNT1ENSG00000085998.9952.625101233.83450-0.373203.743601.96420K562SRSF9
POMGNT1ENSG00000085998.9724.52130941.83930-0.378502.693701.68990K562UCHL5
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for POMGNT1 is not available on ENCORE database.





8 RBPs can affect the splicing of POMGNT1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEPOMGNT1ENSG00000085998.9chr1-466549134665502946654356466546524665512946655239-0.248000.000450.01997excludedK562PRPF8
SEPOMGNT1ENSG00000085998.9chr1-466602244666032346659945466600734666051546660633-0.097000.000070.00206excludedHepG2U2AF1
SEPOMGNT1ENSG00000085998.9chr1-466549134665502946654390466546524665512946655239-0.455000.000000.00030excludedHepG2PRPF8
SEPOMGNT1ENSG00000085998.9chr1-466602244666032346659945466600734666051546660633-0.156000.004330.04742excludedHepG2U2AF2
SEPOMGNT1ENSG00000085998.9chr1-466602244666032346659945466600734666051546660633-0.112000.000030.00285excludedHepG2SF3B4
A3SSPOMGNT1ENSG00000085998.9chr1-4665897646659076466589764665906046659235466592880.161000.000000.00001longerK562AQR
A3SSPOMGNT1ENSG00000085998.9chr1-4665614446656293466561444665618946656391466564560.093000.006430.03604longerK562AQR
A3SSPOMGNT1ENSG00000085998.9chr1-4665614446656293466561444665618946656391466564560.212000.000000.00024longerHepG2SF3B4
RIPOMGNT1ENSG00000085998.9chr1-4665884546659076466588454665888746658976466590760.107000.000440.00925includedK562SF3B4
RIPOMGNT1ENSG00000085998.9chr1-4665884546659076466588454665888746658976466590760.068000.000040.00038includedK562PUS1
RIPOMGNT1ENSG00000085998.9chr1-466543544665502946654354466546524665491346655029-0.147000.001160.01691excludedHepG2PRPF8
RIPOMGNT1ENSG00000085998.9chr1-466543544665502946654354466546524665491346655029-0.124000.000120.00648excludedHepG2MATR3
RIPOMGNT1ENSG00000085998.9chr1-4665884546659076466588454665888746658976466590760.079000.006520.08643includedK562U2AF1
RIPOMGNT1ENSG00000085998.9chr1-4665884546659076466588454665888746658976466590760.112000.000000.00000includedK562AQR
MXEPOMGNT1ENSG00000085998.9chr1-46660224466603234666051546660633466599454666007346661482466615960.176000.008410.046981includedHepG2U2AF2
MXEPOMGNT1ENSG00000085998.9chr1-46660224466603234666051546660633466599454666007346661482466615960.150000.003150.086131includedHepG2SF3B4
MXEPOMGNT1ENSG00000085998.9chr1-4666022446660323466605154666063346659945466600734666148246661596-0.161000.000840.042272includedK562SAFB

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for POMGNT1 is not avaliable on ENCORE database.