POLR2J3

General Information

Gene Name       : POLR2J3
Gene ID             : ENSG00000168255.20
Essential Gene : Yes

Functions

Localization

Domains (AlphaFold: POLR2J3)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878POLR2J3ENSG00000168255.208.6720.6314.65ENCSR000AEF
HepG2POLR2J3ENSG00000168255.2022.1113.2017.66ENCSR985KAT
K562POLR2J3ENSG00000168255.2033.7630.6732.22ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for POLR2J3 is not avaliable on ENCORE database.



Proteins bound to RNA
  • POLR2J3 RNA is bound by 2 proteins.  







eCLIP assay for POLR2J3 is not avaliable on ENCORE database.





2 proteins are bound to POLR2J3 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr7102180467102180524-3'-UTR,CDS,intron-Distal,intron-Proximal3.920633.11168K562ZNF622
chr7102194713102194779-intron-Distal4.497313.57018HepG2HNRNPK
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for POLR2J3 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for POLR2J3 is not available on ENCORE database.

  • 61 RBPs can affect the levels of POLR2J3.  








The Knockdown/knockout RNA-Seq assay for POLR2J3 is not available on ENCORE database.





61 RBPs can affect the gene expression of POLR2J3 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
POLR2J3ENSG00000168255.14498.48130618.43710-0.311102.454901.87610HepG2ACO1
POLR2J3ENSG00000168255.14383.73720519.79670-0.437802.030501.56700HepG2AKAP1
POLR2J3ENSG00000168255.14507.46960621.30030-0.292002.111301.42900HepG2AKAP8L
POLR2J3ENSG00000168255.14480.41730679.92040-0.501102.682001.92230HepG2CALR
POLR2J3ENSG00000168255.14497.89540618.25180-0.312402.561901.91720HepG2CKAP4
POLR2J3ENSG00000168255.14359.78440497.94080-0.468802.470601.87650HepG2DDX3X
POLR2J3ENSG00000168255.14595.01330454.440400.388701.990001.44500HepG2EIF4A3
POLR2J3ENSG00000168255.14461.03380604.27830-0.390302.590701.78340HepG2EWSR1
POLR2J3ENSG00000168255.14614.71830476.387100.367702.163601.46100HepG2FUBP3
POLR2J3ENSG00000168255.14590.65250458.460400.365401.937401.35440HepG2FXR1
POLR2J3ENSG00000168255.14659.39100425.316000.632502.954402.26840HepG2G3BP1
POLR2J3ENSG00000168255.14589.80990451.492500.385402.132801.35670HepG2G3BP2
POLR2J3ENSG00000168255.14634.84610474.678600.419402.723002.08130HepG2HNRNPA1
POLR2J3ENSG00000168255.14771.17600603.232500.354203.320402.54060HepG2HNRNPF
POLR2J3ENSG00000168255.14691.79320430.608500.683905.968704.97190HepG2HNRNPK
POLR2J3ENSG00000168255.14676.52240551.998200.293402.644301.98540HepG2HNRNPL
POLR2J3ENSG00000168255.14991.09710790.417800.326301.987501.44540HepG2HNRNPLL
POLR2J3ENSG00000168255.14646.54550524.506200.301702.329001.76870HepG2HNRNPU
POLR2J3ENSG00000168255.14654.68650458.620200.513403.421002.69130HepG2MAGOH
POLR2J3ENSG00000168255.14680.24300472.065800.527003.455202.75120HepG2NCBP2
POLR2J3ENSG00000168255.14311.97630509.16260-0.706703.284202.51880HepG2RAVER1
POLR2J3ENSG00000168255.14830.75720348.301201.254004.160101.86390HepG2RBM17
POLR2J3ENSG00000168255.14336.04280648.74450-0.9490012.8159011.86420HepG2RBM22
POLR2J3ENSG00000168255.14713.16940336.745601.082503.324901.80710HepG2SF1
POLR2J3ENSG00000168255.14602.08870782.37250-0.377902.444301.77920HepG2SF3B1
POLR2J3ENSG00000168255.14659.68310550.111700.261902.194401.55750HepG2SLBP
POLR2J3ENSG00000168255.14667.69190300.608101.151204.139402.46090HepG2SNRNP200
POLR2J3ENSG00000168255.14459.20730732.71990-0.674109.217908.45080HepG2SRFBP1
POLR2J3ENSG00000168255.14406.05570506.07430-0.317702.044101.62040HepG2SRSF1
POLR2J3ENSG00000168255.14743.58590592.651200.327202.807302.10600HepG2SRSF7
POLR2J3ENSG00000168255.14579.27980859.81480-0.569805.095604.25760HepG2U2AF1
POLR2J3ENSG00000168255.14329.14750194.828000.756402.231701.54980HepG2UCHL5
POLR2J3ENSG00000168255.141851.394501406.970800.395903.626302.97230K562AQR
POLR2J3ENSG00000168255.142208.298602773.14820-0.328603.971102.52490K562CCDC124
POLR2J3ENSG00000168255.141429.68990904.190700.660908.520107.07850K562EIF4A3
POLR2J3ENSG00000168255.141065.23080814.251800.387503.998502.56620K562EIF4B
POLR2J3ENSG00000168255.142754.927402193.557100.328602.999601.68070K562EXOSC5
POLR2J3ENSG00000168255.14908.30430698.912200.378003.016601.51170K562G3BP1
POLR2J3ENSG00000168255.14280.20760642.17930-1.196505.802904.69370K562G3BP2
POLR2J3ENSG00000168255.142148.545801173.148000.872902.732701.52370K562HNRNPA2B1
POLR2J3ENSG00000168255.141993.697101400.660000.509206.497205.62150K562HNRNPC
POLR2J3ENSG00000168255.142006.351601569.066500.354604.440103.29970K562HNRNPU
POLR2J3ENSG00000168255.141056.85780731.294600.531203.858102.56590K562IGF2BP2
POLR2J3ENSG00000168255.141954.013701420.980000.459504.295402.38850K562LIN28B
POLR2J3ENSG00000168255.14987.71450766.671700.365402.887401.94330K562MATR3
POLR2J3ENSG00000168255.142369.758802870.60000-0.276603.031602.07070K562MBNL1
POLR2J3ENSG00000168255.142280.106501845.395200.305102.686301.82620K562METAP2
POLR2J3ENSG00000168255.142348.304001987.813500.240303.031502.18730K562MTPAP
POLR2J3ENSG00000168255.142683.720702208.746300.280905.616804.60920K562NSUN2
POLR2J3ENSG00000168255.142086.754601025.525801.024802.725301.74530K562PABPN1
POLR2J3ENSG00000168255.14969.17980683.521100.503702.539401.60330K562PCBP2
POLR2J3ENSG00000168255.14678.66850955.04040-0.492903.977103.07880K562PRPF8
POLR2J3ENSG00000168255.141909.510501255.889700.604403.899802.79830K562PSIP1
POLR2J3ENSG00000168255.141145.96950746.447800.618408.175407.07630K562PTBP1
POLR2J3ENSG00000168255.141929.866102877.96160-0.576503.965702.99370K562PUF60
POLR2J3ENSG00000168255.141127.96670715.597100.656407.241805.80300K562RBM22
POLR2J3ENSG00000168255.141271.19980697.691000.8654011.515708.39350K562RBM34
POLR2J3ENSG00000168255.142659.581902179.309900.287203.570302.65170K562SF3A3
POLR2J3ENSG00000168255.141410.232301086.431100.376203.088701.99100K562SRFBP1
POLR2J3ENSG00000168255.141927.073101468.341300.392102.567401.56120K562SRSF4
POLR2J3ENSG00000168255.142316.089901807.392800.357704.922803.34460K562SRSF7
POLR2J3ENSG00000168255.141258.00050924.466700.444303.137602.05440K562SUPV3L1
POLR2J3ENSG00000168255.14955.13300740.559800.367002.534501.85550K562TARDBP
POLR2J3ENSG00000168255.141780.147601207.925800.559405.538204.17060K562TIAL1
POLR2J3ENSG00000168255.141831.557501283.540700.512805.773104.29280K562TRIM56
POLR2J3ENSG00000168255.14424.64490642.44170-0.597303.735202.79980K562U2AF2
POLR2J3ENSG00000168255.141376.22200978.543600.491904.298903.00320K562UCHL5
POLR2J3ENSG00000168255.143201.966302341.972100.4511010.360009.08230K562UPF1
POLR2J3ENSG00000168255.141367.67240996.603700.456503.728002.24860K562XRN2
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for POLR2J3 is not available on ENCORE database.





26 RBPs can affect the splicing of POLR2J3 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEPOLR2J3ENSG00000168255.14chr7-102210281102210371102207443102208631102212918102213030-0.109000.000210.01817excludedHepG2RBM22
SEPOLR2J3ENSG00000168255.14chr7-102210281102210371102207443102208631102212918102213030-0.109000.000580.05602excludedHepG2DDX59
SEPOLR2J3ENSG00000168255.14chr7-102210281102210371102207443102208631102212918102213030-0.139000.000120.00233excludedHepG2U2AF2
SEPOLR2J3ENSG00000168255.14chr7-102210281102210371102207443102208631102212918102213030-0.062000.001340.01558excludedK562AQR
SEPOLR2J3ENSG00000168255.14chr7-1022102811022103711022074431022086311022129181022130300.136000.000060.01699includedHepG2RBM15
SEPOLR2J3ENSG00000168255.14chr7-102210281102210371102208456102208631102212918102212986-0.150000.000230.00756excludedHepG2SRSF1
SEPOLR2J3ENSG00000168255.14chr7-102210281102210371102207443102208631102212918102213030-0.141000.000490.02746excludedHepG2PCBP1
SEPOLR2J3ENSG00000168255.14chr7-102210281102210371102207443102208631102212918102213030-0.071000.000090.00240excludedK562HNRNPC
A5SSPOLR2J3ENSG00000168255.14chr7-1022128891022130301022129181022130301022102811022103710.149000.000000.00002longerK562HNRNPUL1
A5SSPOLR2J3ENSG00000168255.14chr7-1022128891022130301022129181022130301022102811022103710.196000.000000.00000longerK562SBDS
A5SSPOLR2J3ENSG00000168255.14chr7-1022128891022130301022129181022130301022102811022103710.158000.000000.00002longerK562PUS1
A5SSPOLR2J3ENSG00000168255.14chr7-1022128891022130301022129181022130301022102811022103710.189000.000000.00001longerK562AQR
A5SSPOLR2J3ENSG00000168255.14chr7-1022128891022130301022129181022130301022102811022103710.166000.000000.00072longerK562MTPAP
A5SSPOLR2J3ENSG00000168255.14chr7-1022128891022130301022129181022130301022102811022103710.162000.000000.00272longerK562WDR3
A5SSPOLR2J3ENSG00000168255.14chr7-102212889102213030102212918102213030102210281102210371-0.171000.000000.00125shorterK562APOBEC3C
A5SSPOLR2J3ENSG00000168255.14chr7-102212889102213030102212918102213030102210281102210371-0.123000.000460.03160shorterHepG2SRSF1
A5SSPOLR2J3ENSG00000168255.14chr7-1022128891022130301022129181022130301022102811022103710.319000.000000.00000longerK562HNRNPC
A5SSPOLR2J3ENSG00000168255.14chr7-1022128891022130301022129181022130301022102811022103710.275000.000000.00000longerK562PPIL4
A5SSPOLR2J3ENSG00000168255.14chr7-1022128891022130301022129181022130301022102811022103710.180000.000000.00001longerK562ZC3H8
A5SSPOLR2J3ENSG00000168255.14chr7-1022128891022130301022129181022130301022102811022103710.159000.000000.00014longerK562RBM15
A5SSPOLR2J3ENSG00000168255.14chr7-102212889102213030102212918102213030102210281102210371-0.178000.000000.00201shorterK562EIF4G2
A5SSPOLR2J3ENSG00000168255.14chr7-1022128891022130301022129181022130301022102811022103710.129000.000020.01617longerK562UPF1
A5SSPOLR2J3ENSG00000168255.14chr7-1022128891022130301022129181022130301022102811022103710.179000.000000.00002longerK562UTP18
A5SSPOLR2J3ENSG00000168255.14chr7-1022128891022130301022129181022130301022102811022103710.220000.000000.00003longerK562HNRNPU
A5SSPOLR2J3ENSG00000168255.14chr7-1022128891022130301022129181022130301022102811022103710.202000.000000.00076longerK562LARP4
A5SSPOLR2J3ENSG00000168255.14chr7-1022128891022130301022129181022130301022102811022103710.366000.000000.00000longerK562DDX55
A5SSPOLR2J3ENSG00000168255.14chr7-102212889102213030102212918102213030102210281102210371-0.162000.000020.02156shorterK562PUM1
A5SSPOLR2J3ENSG00000168255.14chr7-1022128891022130301022129181022130301022102811022103710.211000.000000.00000longerK562NSUN2
A5SSPOLR2J3ENSG00000168255.14chr7-102212889102213030102212918102213030102210281102210371-0.137000.000050.01342shorterHepG2PTBP1
A5SSPOLR2J3ENSG00000168255.14chr7-1022128891022130301022129181022130301022102811022103710.247000.000000.00000longerK562DHX30

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for POLR2J3 is not avaliable on ENCORE database.