PAFAH1B3

General Information

Gene Name       : PAFAH1B3
Gene ID             : ENSG00000079462.7
Essential Gene : No

Functions

Localization

Domains (AlphaFold: PAFAH1B3)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878PAFAH1B3ENSG00000079462.79.6031.7420.67ENCSR000AEF
HepG2PAFAH1B3ENSG00000079462.757.1828.5742.88ENCSR985KAT
K562PAFAH1B3ENSG00000079462.781.5765.0273.29ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for PAFAH1B3 is not avaliable on ENCORE database.



Proteins bound to RNA
  • PAFAH1B3 RNA is bound by 3 proteins.  







eCLIP assay for PAFAH1B3 is not avaliable on ENCORE database.





3 proteins are bound to PAFAH1B3 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr194280122842801348-3'-UTR,CDS,intron-Distal,intron-Proximal3.739045.19325HepG2LARP4
chr194280665942806757-5'-UTR,intron-Distal,intron-Proximal4.3995411.42614K562DDX3X
chr194280657142806659-5'-UTR,intron-Distal,intron-Proximal3.890317.11978K562DDX3X
chr194280436242804394-CDS,intron-Distal,intron-Proximal3.918583.25175K562YBX3
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for PAFAH1B3 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for PAFAH1B3 is not available on ENCORE database.

  • 73 RBPs can affect the levels of PAFAH1B3.  








The Knockdown/knockout RNA-Seq assay for PAFAH1B3 is not available on ENCORE database.





73 RBPs can affect the gene expression of PAFAH1B3 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
PAFAH1B3ENSG00000079462.3588.65470375.639000.648003.992803.37110HepG2AKAP1
PAFAH1B3ENSG00000079462.3289.01500188.485000.616602.958701.88670HepG2AKAP8
PAFAH1B3ENSG00000079462.3409.10060321.038800.349602.112201.42960HepG2AKAP8L
PAFAH1B3ENSG00000079462.3134.38580215.93500-0.684203.148702.51470HepG2BOP1
PAFAH1B3ENSG00000079462.3114.71450174.59150-0.605902.277501.57220HepG2CALR
PAFAH1B3ENSG00000079462.3229.49070319.47140-0.477303.087002.39250HepG2CKAP4
PAFAH1B3ENSG00000079462.3103.13790175.39070-0.766002.682201.35670HepG2CSTF2T
PAFAH1B3ENSG00000079462.3103.85020184.87100-0.832003.962702.85810HepG2DDX24
PAFAH1B3ENSG00000079462.3551.02290359.790600.614904.028603.28520HepG2DDX3X
PAFAH1B3ENSG00000079462.3421.55500244.302300.787003.707502.82680HepG2DDX55
PAFAH1B3ENSG00000079462.3415.33650309.169000.425801.864301.34700HepG2DDX6
PAFAH1B3ENSG00000079462.3212.81200142.335900.580202.826802.11840HepG2DNAJC21
PAFAH1B3ENSG00000079462.381.42010173.95580-1.095305.206903.68840HepG2AGO1
PAFAH1B3ENSG00000079462.3462.70790297.111000.639004.052303.34450HepG2EIF2S1
PAFAH1B3ENSG00000079462.3143.48290235.43740-0.714503.717602.81430HepG2FUBP3
PAFAH1B3ENSG00000079462.3511.02340331.382200.624804.151503.31570HepG2FXR1
PAFAH1B3ENSG00000079462.3143.85000224.69050-0.643402.604701.98110HepG2GPKOW
PAFAH1B3ENSG00000079462.3255.06200159.839500.674102.255201.62270HepG2HNRNPC
PAFAH1B3ENSG00000079462.3417.96310260.029000.684606.957505.93310HepG2HNRNPL
PAFAH1B3ENSG00000079462.3223.92410331.49850-0.566002.832802.17040HepG2MAGOH
PAFAH1B3ENSG00000079462.3574.43820333.329900.785102.960102.31000HepG2MATR3
PAFAH1B3ENSG00000079462.3568.87830341.162200.737605.484304.60760HepG2NCBP2
PAFAH1B3ENSG00000079462.3373.83550283.069900.401102.388001.68080HepG2NOL12
PAFAH1B3ENSG00000079462.3108.43710190.14710-0.810303.497602.65450HepG2NSUN2
PAFAH1B3ENSG00000079462.3185.29440303.73770-0.713002.853902.12160HepG2PABPC4
PAFAH1B3ENSG00000079462.3234.12990157.167300.574903.043302.15910HepG2PARN
PAFAH1B3ENSG00000079462.3204.18910141.621400.527802.433601.73800HepG2PPIL4
PAFAH1B3ENSG00000079462.3406.68950286.648400.504503.363402.62540HepG2PUM2
PAFAH1B3ENSG00000079462.3234.66510339.66640-0.533503.088202.43510HepG2QKI
PAFAH1B3ENSG00000079462.3687.06400478.531900.521704.929304.28760HepG2RBM22
PAFAH1B3ENSG00000079462.3583.40580349.045200.741008.213407.37060HepG2NELFE
PAFAH1B3ENSG00000079462.3189.46150302.02240-0.672803.749602.97380HepG2RPLP0
PAFAH1B3ENSG00000079462.3112.98880212.22930-0.909404.580203.68960HepG2SF3B1
PAFAH1B3ENSG00000079462.3293.78680164.899200.833106.866805.92320HepG2SMN1
PAFAH1B3ENSG00000079462.3156.40140236.14670-0.594402.021301.35800HepG2SNRNP70
PAFAH1B3ENSG00000079462.3437.03790540.46330-0.306402.233701.76790HepG2SRFBP1
PAFAH1B3ENSG00000079462.3256.54420340.82900-0.409802.123801.69360HepG2SRSF1
PAFAH1B3ENSG00000079462.3393.59610266.818300.560804.494003.73030HepG2SRSF5
PAFAH1B3ENSG00000079462.3179.58530277.28620-0.626704.133403.48390HepG2SRSF9
PAFAH1B3ENSG00000079462.3486.07700303.435700.679707.521206.57740HepG2SUCLG1
PAFAH1B3ENSG00000079462.3167.90210306.36220-0.867603.798703.15930HepG2TAF15
PAFAH1B3ENSG00000079462.3201.36870281.49260-0.483302.257401.50000HepG2TIA1
PAFAH1B3ENSG00000079462.3211.98240155.666400.445401.954001.46410HepG2TRIM56
PAFAH1B3ENSG00000079462.3810.25320524.689400.626808.581907.65550K562AGGF1
PAFAH1B3ENSG00000079462.3853.78360545.968500.645006.268305.25680K562AKAP8L
PAFAH1B3ENSG00000079462.3589.772501023.21070-0.794909.324208.34910K562AQR
PAFAH1B3ENSG00000079462.3700.47520572.862500.290002.149101.35100K562ATP5C1
PAFAH1B3ENSG00000079462.3503.82470377.826500.415102.796601.73230K562CSTF2
PAFAH1B3ENSG00000079462.31244.945601528.24520-0.295803.025502.00700K562CELF1
PAFAH1B3ENSG00000079462.31030.19470774.232100.412004.945704.11030K562DDX47
PAFAH1B3ENSG00000079462.3683.73290849.99970-0.314002.687301.97650K562EIF2S2
PAFAH1B3ENSG00000079462.3332.23070158.300301.069409.981208.46500K562EIF3G
PAFAH1B3ENSG00000079462.3592.53040449.959500.397002.709401.43640K562EWSR1
PAFAH1B3ENSG00000079462.3700.99770444.931800.655706.188804.88620K562FIP1L1
PAFAH1B3ENSG00000079462.3205.12410300.76700-0.552102.738501.88940K562FMR1
PAFAH1B3ENSG00000079462.3727.20690536.092500.439802.923502.30390K562FXR1
PAFAH1B3ENSG00000079462.318.23870117.60970-2.6889013.7961011.95790K562G3BP2
PAFAH1B3ENSG00000079462.31412.888501132.630300.318902.517501.79300K562GRSF1
PAFAH1B3ENSG00000079462.3138.55160240.98500-0.798503.440502.38630K562KRR1
PAFAH1B3ENSG00000079462.3442.21110325.128800.443602.072601.34040K562MAGOH
PAFAH1B3ENSG00000079462.3556.27910324.419700.777804.136002.98980K562MATR3
PAFAH1B3ENSG00000079462.3987.715301324.53080-0.423304.003302.64580K562MSI2
PAFAH1B3ENSG00000079462.3738.98170411.992700.842803.806502.22990K562NONO
PAFAH1B3ENSG00000079462.3441.91500615.99210-0.479102.195001.45430K562PCBP3
PAFAH1B3ENSG00000079462.3767.51960505.134200.603405.544804.31760K562PPIG
PAFAH1B3ENSG00000079462.3506.59860315.907300.681205.262204.37100K562PTBP1
PAFAH1B3ENSG00000079462.31019.173501355.82390-0.411803.492602.57830K562PUF60
PAFAH1B3ENSG00000079462.3905.593401442.38700-0.6715011.370409.12310K562PUM1
PAFAH1B3ENSG00000079462.31184.138101412.99280-0.254902.572001.64410K562PUM2
PAFAH1B3ENSG00000079462.3908.21040541.412500.746204.762104.07430K562PUS1
PAFAH1B3ENSG00000079462.3212.16540131.524600.689803.598901.52930K562QKI
PAFAH1B3ENSG00000079462.3748.74210527.556800.505005.138504.35310K562RBM15
PAFAH1B3ENSG00000079462.3158.23250268.41040-0.762403.730302.59200K562SF3B1
PAFAH1B3ENSG00000079462.379.95930145.35700-0.862303.413701.61540K562SND1
PAFAH1B3ENSG00000079462.3590.40040802.69430-0.443205.099503.87520K562SRPK2
PAFAH1B3ENSG00000079462.336.89010115.44100-1.645905.121602.87910K562TAF15
PAFAH1B3ENSG00000079462.3510.02680313.389300.702503.649002.83290K562TARDBP
PAFAH1B3ENSG00000079462.3519.21710302.320100.780204.574003.48350K562TIA1
PAFAH1B3ENSG00000079462.3487.49200296.852400.715503.753402.45150K562TRA2A
PAFAH1B3ENSG00000079462.353.73850117.67510-1.130804.881003.81600K562U2AF2
PAFAH1B3ENSG00000079462.3692.62280841.86640-0.281502.372101.70440K562UPF1
PAFAH1B3ENSG00000079462.3307.41140563.84800-0.875103.622401.69880K562YTHDC2
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for PAFAH1B3 is not available on ENCORE database.





1 RBPs can affect the splicing of PAFAH1B3 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEPAFAH1B3ENSG00000079462.3chr19-428065884280664742806383428064774280685042806922-0.480000.000010.00786excludedK562PUM1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for PAFAH1B3 is not avaliable on ENCORE database.