NEIL1

General Information

Gene Name       : NEIL1
Gene ID             : ENSG00000140398.13
Essential Gene : No

Functions

Localization

Domains (AlphaFold: NEIL1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878NEIL1ENSG00000140398.130.790.250.52ENCSR000AEF
HepG2NEIL1ENSG00000140398.137.364.285.82ENCSR985KAT
K562NEIL1ENSG00000140398.132.221.121.67ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for NEIL1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • NEIL1 RNA is bound by 5 proteins.  







eCLIP assay for NEIL1 is not avaliable on ENCORE database.





5 proteins are bound to NEIL1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr157564000075640160+5'-UTR,intron-Distal,intron-Proximal4.768166.10370HepG2PRPF4
chr157564497675645066+CDS,intron-Proximal4.2447711.88486HepG2PPIG
chr157564652275646625+CDS,intron-Proximal3.515885.56093HepG2RBM5
chr157564496675645096+CDS,intron-Proximal4.308005.23082K562DDX24
chr157564466775644705+CDS4.178676.41974HepG2PPIG
chr157564674075646822+CDS,intron-Proximal4.054934.13746HepG2PPIG
chr157564710375647163+CDS,intron-Proximal4.326226.36347HepG2PPIG
chr157564668475646813+CDS,intron-Proximal4.444274.28220HepG2GRWD1
chr157564705475647103+CDS3.935465.24452HepG2PPIG
chr157564453775644572+CDS,intron-Distal,intron-Proximal3.893964.13746HepG2PPIG
chr157564505675645150+intron-Distal,intron-Proximal4.335344.50960HepG2GRWD1
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for NEIL1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for NEIL1 is not available on ENCORE database.

  • 63 RBPs can affect the levels of NEIL1.  








The Knockdown/knockout RNA-Seq assay for NEIL1 is not available on ENCORE database.





63 RBPs can affect the gene expression of NEIL1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
NEIL1ENSG00000140398.9415.46450283.541400.551102.663401.73790HepG2ABCF1
NEIL1ENSG00000140398.9343.54430192.034800.839004.403803.22000HepG2BCCIP
NEIL1ENSG00000140398.9322.49200166.854100.950605.859404.60290HepG2BCLAF1
NEIL1ENSG00000140398.9368.61150239.332200.623003.033802.01080HepG2CCAR1
NEIL1ENSG00000140398.9131.03250221.49590-0.757402.256501.55410HepG2CIRBP
NEIL1ENSG00000140398.9419.63920325.546400.366202.694201.96100HepG2DAZAP1
NEIL1ENSG00000140398.9421.88560303.070700.477104.099603.10770HepG2DDX19B
NEIL1ENSG00000140398.9332.39300232.252700.517102.820702.13760HepG2DDX21
NEIL1ENSG00000140398.9270.56080155.237800.801405.064003.76110HepG2DHX30
NEIL1ENSG00000140398.9423.35680313.509900.433302.877602.18780HepG2DKC1
NEIL1ENSG00000140398.9228.44110160.955000.505102.383201.72470HepG2DNAJC21
NEIL1ENSG00000140398.9252.83070159.520500.664304.481903.68750HepG2DNAJC2
NEIL1ENSG00000140398.9563.94780222.859101.3393015.2652013.94410HepG2EIF2S1
NEIL1ENSG00000140398.9127.00890195.84960-0.624802.487601.62590HepG2EIF3D
NEIL1ENSG00000140398.9377.14080246.226900.615003.297302.60090HepG2EIF4A3
NEIL1ENSG00000140398.9244.51740133.651800.871402.611401.62590HepG2FTO
NEIL1ENSG00000140398.9310.95570179.746500.790604.930403.89570HepG2FUBP3
NEIL1ENSG00000140398.9321.51490230.528900.479802.091401.50930HepG2G3BP1
NEIL1ENSG00000140398.9439.56600244.857800.844006.345104.98670HepG2G3BP2
NEIL1ENSG00000140398.9311.99600151.280701.044202.088101.52810HepG2GPKOW
NEIL1ENSG00000140398.9307.01090180.743300.764204.444003.58030HepG2HNRNPC
NEIL1ENSG00000140398.9294.17980202.455400.539003.610302.79980HepG2HNRNPF
NEIL1ENSG00000140398.9293.87990179.548600.710805.207004.39590HepG2HNRNPU
NEIL1ENSG00000140398.9293.62180199.363500.558503.423902.62500HepG2IGF2BP1
NEIL1ENSG00000140398.9286.10380183.403700.641404.765503.82550HepG2ILF2
NEIL1ENSG00000140398.9449.45350235.722200.931006.198904.64040HepG2KHSRP
NEIL1ENSG00000140398.9245.82280147.195400.739802.892801.89970HepG2MTPAP
NEIL1ENSG00000140398.9495.03640255.927500.951707.780206.74430HepG2NCBP2
NEIL1ENSG00000140398.9301.21810199.962900.591004.035603.33060HepG2PCBP1
NEIL1ENSG00000140398.9240.98650160.143800.589503.257202.46270HepG2PPIL4
NEIL1ENSG00000140398.9348.28650203.491900.775204.209903.56610HepG2PTBP1
NEIL1ENSG00000140398.9433.23000220.339500.9753010.051908.96560HepG2QKI
NEIL1ENSG00000140398.9116.12830216.30520-0.897303.230702.47230HepG2RAVER1
NEIL1ENSG00000140398.9290.08500199.990100.536402.899402.21150HepG2RBM25
NEIL1ENSG00000140398.9229.53610100.569801.190403.081501.37200HepG2RBM39
NEIL1ENSG00000140398.9343.76630226.448500.602104.112103.47580HepG2NELFE
NEIL1ENSG00000140398.9381.89130210.939400.856208.099907.12830HepG2RECQL
NEIL1ENSG00000140398.9343.64310234.403000.551803.025502.18840HepG2RPS2
NEIL1ENSG00000140398.9354.61400180.574200.973606.215905.02280HepG2RPS3A
NEIL1ENSG00000140398.9246.73790159.898600.625703.738303.00910HepG2SAFB2
NEIL1ENSG00000140398.9159.10050348.36260-1.130708.262807.04860HepG2SF3A3
NEIL1ENSG00000140398.9419.45460211.821600.985604.794204.04860HepG2SF3B4
NEIL1ENSG00000140398.9376.07030295.527200.347602.262901.61760HepG2SLBP
NEIL1ENSG00000140398.981.44890153.73730-0.916502.407601.48210HepG2SRSF3
NEIL1ENSG00000140398.9250.61940179.900400.478202.217201.71150HepG2SRSF9
NEIL1ENSG00000140398.9529.07100388.048700.447103.698003.12420HepG2SSB
NEIL1ENSG00000140398.9385.52800198.789200.955509.887308.93250HepG2TAF15
NEIL1ENSG00000140398.9224.95750140.664100.677303.165402.39490HepG2TARDBP
NEIL1ENSG00000140398.9256.36300182.612400.489302.481301.68700HepG2TIA1
NEIL1ENSG00000140398.9352.99620174.481401.016509.594308.76110HepG2TIAL1
NEIL1ENSG00000140398.9414.24060301.101200.460102.880801.98680HepG2TUFM
NEIL1ENSG00000140398.9320.21950172.089700.895804.078302.85020HepG2UPF2
NEIL1ENSG00000140398.9128.83430298.27390-1.2111011.4929010.40490HepG2UTP3
NEIL1ENSG00000140398.9319.57190185.021300.788304.084103.21100HepG2XRN2
NEIL1ENSG00000140398.9188.11780339.77980-0.853008.432507.61170HepG2ZNF622
NEIL1ENSG00000140398.928.1461069.28890-1.299703.167601.83690K562APOBEC3C
NEIL1ENSG00000140398.957.4184023.902001.264302.494501.49860K562CSTF2
NEIL1ENSG00000140398.952.9295020.675301.356102.899801.96350K562FTO
NEIL1ENSG00000140398.99.8842056.74380-2.521307.347906.42540K562FXR1
NEIL1ENSG00000140398.995.2135035.987001.403604.305503.57740K562HNRNPC
NEIL1ENSG00000140398.9125.5145081.195200.628302.089901.31480K562HNRNPU
NEIL1ENSG00000140398.9101.9914045.557001.162602.912201.88850K562PABPN1
NEIL1ENSG00000140398.98.7716039.07290-2.155303.905403.01600K562PRPF8
NEIL1ENSG00000140398.970.0074032.278901.116802.409601.57140K562PSIP1
NEIL1ENSG00000140398.918.6584044.76750-1.262602.653902.00140K562PTBP1
NEIL1ENSG00000140398.973.1378031.039401.236403.095002.10110K562TIAL1
NEIL1ENSG00000140398.965.3407027.368001.255403.207801.68830K562TRIP6
NEIL1ENSG00000140398.997.3382052.479300.891202.902302.00560K562WDR3
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for NEIL1 is not available on ENCORE database.





1 RBPs can affect the splicing of NEIL1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SENEIL1ENSG00000140398.9chr15+756444517564457175641224756416807564466475644728-0.425000.000170.00305excludedHepG2U2AF2

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for NEIL1 is not avaliable on ENCORE database.