NDUFB2

General Information

Gene Name       : NDUFB2
Gene ID             : ENSG00000090266.12
Essential Gene : No

Functions

Localization

Domains (AlphaFold: NDUFB2)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878NDUFB2ENSG00000090266.1230.0574.3852.21ENCSR000AEF
HepG2NDUFB2ENSG00000090266.12127.3190.06108.69ENCSR985KAT
K562NDUFB2ENSG00000090266.12210.62147.79179.20ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for NDUFB2 is not avaliable on ENCORE database.



Proteins bound to RNA
  • NDUFB2 RNA is bound by 21 proteins.  







eCLIP assay for NDUFB2 is not avaliable on ENCORE database.





21 proteins are bound to NDUFB2 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr7140404703140404733+3'-UTR,5'-UTR,CDS,intron-Distal3.123265.81564K562PABPC4
chr7140404727140404802+3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal4.965817.46483HepG2PRPF8
chr7140404677140404765+3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal4.1553813.05232HepG2LARP4
chr7140406362140406430+3'-UTR,intron-Distal,intron-Proximal3.860613.01032HepG2LARP4
chr7140406378140406434+3'-UTR,intron-Distal5.4622817.53659K562PABPC4
chr7140402701140402755+3'-UTR,CDS,intron-Distal4.789884.66990HepG2DDX3X
chr7140402747140402787+3'-UTR,CDS,intron-Distal3.4543823.78131K562DDX3X
chr7140402664140402747+3'-UTR,CDS,intron-Distal,intron-Proximal3.7901567.48674K562DDX3X
chr7140406333140406395+3'-UTR,intron-Distal,intron-Proximal4.708594.13847K562AQR
chr7140404659140404668+3'-UTR,CDS,intron-Distal,intron-Proximal3.267513.54552HepG2LARP4
chr7140406361140406378+3'-UTR,intron-Distal,intron-Proximal3.427003.60832K562PABPC4
chr7140404664140404760+3'-UTR,5'-UTR,CDS,intron-Distal4.048835.01703K562PUM1
chr7140404658140404703+3'-UTR,CDS,intron-Distal,intron-Proximal3.037756.56158K562PABPC4
chr7140402658140402746+3'-UTR,CDS,intron-Distal,intron-Proximal3.8026711.82255K562GEMIN5
chr7140402754140402810+3'-UTR,CDS,intron-Distal3.088705.18420K562FTO
chr7140404659140404764+3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal3.056393.34921K562SND1
chr7140406340140406429+3'-UTR,intron-Distal,intron-Proximal3.133897.19221K562BUD13
chr7140402664140402746+3'-UTR,CDS,intron-Distal,intron-Proximal4.8451518.38666K562FTO
chr7140402665140402690+3'-UTR,CDS,intron-Distal,intron-Proximal3.124495.12374K562PABPC4
chr7140406325140406386+3'-UTR,intron-Distal,intron-Proximal4.786885.52568K562GPKOW
chr7140404730140404764+3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal3.875177.28917K562GRWD1
chr7140406362140406407+3'-UTR,intron-Distal,intron-Proximal4.032084.06501K562GRWD1
chr7140404659140404764+3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal3.905543.51768K562NOLC1
chr7140397005140397080+5'-UTR,intron-Distal,intron-Proximal3.714703.15816HepG2PRPF4
chr7140396506140396623+5'-UTR,CDS,intron-Distal4.98084400.00000K562DDX3X
chr7140396589140396647+5'-UTR,CDS,intron-Distal,intron-Proximal5.0919411.47218K562GEMIN5
chr7140396567140396640+5'-UTR,CDS,intron-Distal3.553264.36276HepG2LARP4
chr7140396554140396645+5'-UTR,CDS,intron-Distal,intron-Proximal3.400535.17903K562UCHL5
chr7140396820140396885+5'-UTR,intron-Distal,intron-Proximal4.043294.22598K562CSTF2T
chr7140396511140396589+5'-UTR,CDS,intron-Distal3.523617.10368K562GEMIN5
chr7140396975140397068+5'-UTR,intron-Distal,intron-Proximal3.870613.23171K562FUS
chr7140396627140396643+5'-UTR,CDS,intron-Distal,intron-Proximal4.4366918.79942K562FTO
chr7140396631140396643+5'-UTR,CDS,intron-Distal,intron-Proximal4.1796236.54412K562DDX3X
chr7140396562140396645+5'-UTR,CDS,intron-Distal,intron-Proximal3.557413.79741HepG2GRWD1
chr7140396531140396648+5'-UTR,CDS,intron-Distal,intron-Proximal4.6498528.03082HepG2DDX3X
chr7140396556140396627+5'-UTR,CDS,intron-Distal3.6604119.03177K562FTO
chr7140396586140396643+5'-UTR,CDS,intron-Distal,intron-Proximal3.332018.05355K562PABPC4
chr7140397315140397376+intron-Distal4.612183.44348K562DDX6
chr7140397316140397384+intron-Distal4.506294.84986K562GTF2F1
chr7140397304140397406+intron-Distal4.971277.23693K562TAF15
chr7140397302140397413+intron-Distal3.350625.58935K562HNRNPA1
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for NDUFB2 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for NDUFB2 is not available on ENCORE database.

  • 71 RBPs can affect the levels of NDUFB2.  








The Knockdown/knockout RNA-Seq assay for NDUFB2 is not available on ENCORE database.





71 RBPs can affect the gene expression of NDUFB2 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
NDUFB2ENSG00000090266.8575.35530407.780200.496604.974904.20540HepG2ACO1
NDUFB2ENSG00000090266.81155.72900561.668201.0409011.7937010.76870HepG2AKAP1
NDUFB2ENSG00000090266.8531.03850409.644300.374302.828002.05360HepG2AKAP8L
NDUFB2ENSG00000090266.8743.83490464.693500.678605.647304.54710HepG2ASCC1
NDUFB2ENSG00000090266.8640.67910441.503700.537103.671802.79020HepG2CIRBP
NDUFB2ENSG00000090266.8404.38250259.409600.640402.873502.09360HepG2CNOT7
NDUFB2ENSG00000090266.8665.85350533.937600.318402.515901.89790HepG2CELF1
NDUFB2ENSG00000090266.8425.27910286.563100.569503.728002.95050HepG2DDX21
NDUFB2ENSG00000090266.8976.22980537.950300.859609.165308.08320HepG2DDX3X
NDUFB2ENSG00000090266.8627.71800459.514500.449902.537401.89860HepG2G3BP1
NDUFB2ENSG00000090266.8355.92720240.140500.567602.479901.42390HepG2GRSF1
NDUFB2ENSG00000090266.8384.04560231.808500.728204.475803.60810HepG2HNRNPC
NDUFB2ENSG00000090266.8368.88880522.90740-0.503404.566503.71850HepG2HNRNPL
NDUFB2ENSG00000090266.8659.01410467.031800.496702.350901.72240HepG2IGF2BP2
NDUFB2ENSG00000090266.8282.60410495.69490-0.810704.216503.40950HepG2MAGOH
NDUFB2ENSG00000090266.8724.93590510.123800.506902.620602.00300HepG2NCBP2
NDUFB2ENSG00000090266.8114.32940454.12120-1.9899016.2941014.59680HepG2PABPC4
NDUFB2ENSG00000090266.8685.45600576.864600.248702.065201.53790HepG2PUM1
NDUFB2ENSG00000090266.8524.48850709.95340-0.436803.637103.06490HepG2RBM22
NDUFB2ENSG00000090266.8348.90940473.43950-0.440303.074802.42950HepG2RECQL
NDUFB2ENSG00000090266.8272.76400475.50360-0.801808.151207.21830HepG2SF3B4
NDUFB2ENSG00000090266.8613.63720496.334900.306002.145101.71380HepG2SRSF1
NDUFB2ENSG00000090266.8257.06740403.80530-0.651505.911805.16020HepG2SRSF9
NDUFB2ENSG00000090266.8847.46170696.237000.283502.524302.02940HepG2SSB
NDUFB2ENSG00000090266.8346.60200446.15860-0.364302.083001.58400HepG2TAF15
NDUFB2ENSG00000090266.8279.95180409.92350-0.550203.793502.82240HepG2TIA1
NDUFB2ENSG00000090266.8387.16970561.98030-0.537602.691001.86580HepG2UBE2L3
NDUFB2ENSG00000090266.8383.92080242.499500.662703.808002.91810HepG2UCHL5
NDUFB2ENSG00000090266.8387.11890223.840100.790207.228606.33640HepG2UTP3
NDUFB2ENSG00000090266.8236.66270164.332700.526102.832802.15450HepG2ZC3H8
NDUFB2ENSG00000090266.81061.39110632.365100.7470013.8357012.66910K562AGGF1
NDUFB2ENSG00000090266.81153.34090658.010000.8095011.254709.81610K562AKAP8L
NDUFB2ENSG00000090266.81319.861702077.05070-0.654104.439103.72840K562AQR
NDUFB2ENSG00000090266.8197.72480307.39070-0.636603.262002.31280K562BOP1
NDUFB2ENSG00000090266.8262.26780383.33020-0.547503.256102.09480K562CCAR1
NDUFB2ENSG00000090266.8216.48700326.85440-0.594403.609902.71530K562CPSF6
NDUFB2ENSG00000090266.81858.351402250.85820-0.276502.662501.70580K562CELF1
NDUFB2ENSG00000090266.8341.34120678.60590-0.991405.519002.87840K562DAZAP1
NDUFB2ENSG00000090266.8937.78650737.526000.346502.784801.73970K562DDX3X
NDUFB2ENSG00000090266.8280.43820429.13240-0.613704.077502.40860K562DHX30
NDUFB2ENSG00000090266.8277.25090412.21170-0.572203.613002.06450K562DNAJC21
NDUFB2ENSG00000090266.8209.82870389.91520-0.893904.508003.19360K562EIF3A
NDUFB2ENSG00000090266.8463.68300770.53780-0.732707.943906.55120K562EIF4A3
NDUFB2ENSG00000090266.8769.54540521.209600.562004.802603.66350K562FIP1L1
NDUFB2ENSG00000090266.8275.17840443.27620-0.687804.328902.86900K562FKBP4
NDUFB2ENSG00000090266.8226.46810332.54740-0.554302.921702.04210K562FMR1
NDUFB2ENSG00000090266.81206.46750801.327800.590206.108705.26190K562FXR1
NDUFB2ENSG00000090266.8352.62200507.58930-0.525502.771202.06230K562G3BP2
NDUFB2ENSG00000090266.8197.49570312.07340-0.660103.798902.87460K562GPKOW
NDUFB2ENSG00000090266.81049.847001325.57970-0.336402.320201.34290K562HNRNPA1
NDUFB2ENSG00000090266.8375.16900509.97150-0.442902.837902.23420K562HNRNPC
NDUFB2ENSG00000090266.8574.86990428.764800.422902.113201.30670K562HNRNPM
NDUFB2ENSG00000090266.81133.386101468.10680-0.373302.478901.63350K562HNRNPU
NDUFB2ENSG00000090266.8259.03650387.04360-0.579303.496301.82930K562KHDRBS1
NDUFB2ENSG00000090266.8169.87900266.45100-0.649402.671301.75760K562KRR1
NDUFB2ENSG00000090266.8696.80300871.67740-0.323002.188301.43580K562MAGOH
NDUFB2ENSG00000090266.8587.43760799.15980-0.444005.594704.58930K562NSUN2
NDUFB2ENSG00000090266.8248.49890536.34930-1.1099011.508308.10860K562PABPC4
NDUFB2ENSG00000090266.8756.37910451.098600.745603.334302.21860K562PABPN1
NDUFB2ENSG00000090266.8417.64290615.11790-0.558603.671402.71060K562PCBP3
NDUFB2ENSG00000090266.8818.41200591.766100.467702.762401.94220K562PPIG
NDUFB2ENSG00000090266.81074.04380717.368500.582205.413504.35980K562PRPF8
NDUFB2ENSG00000090266.81128.21710846.891000.413704.053203.26430K562PTBP1
NDUFB2ENSG00000090266.81654.030202081.50210-0.331604.116002.93710K562PUM2
NDUFB2ENSG00000090266.81080.35680652.525900.727308.172107.28740K562PUS1
NDUFB2ENSG00000090266.81003.07130635.820900.657609.446008.37370K562RBM15
NDUFB2ENSG00000090266.81257.517801669.80680-0.409104.263202.26400K562RBM17
NDUFB2ENSG00000090266.8523.80080788.49700-0.590107.511506.21980K562SF3A3
NDUFB2ENSG00000090266.8178.99540296.76400-0.729403.689602.55930K562SF3B1
NDUFB2ENSG00000090266.8358.68810527.64640-0.556804.901403.74760K562SF3B4
NDUFB2ENSG00000090266.8291.98550422.20950-0.532103.282701.89190K562SLBP
NDUFB2ENSG00000090266.81065.13130830.238100.359302.980002.24920K562SRSF1
NDUFB2ENSG00000090266.8400.82090537.06900-0.422103.170301.54340K562SRSF9
NDUFB2ENSG00000090266.8424.62350584.34580-0.460603.620202.12520K562SSB
NDUFB2ENSG00000090266.81337.454701742.63710-0.381804.474102.60440K562SUCLG1
NDUFB2ENSG00000090266.8511.97610694.52630-0.440002.603601.61970K562SUPV3L1
NDUFB2ENSG00000090266.8328.94880439.80700-0.419002.124901.31620K562TIAL1
NDUFB2ENSG00000090266.8357.91000467.46310-0.385302.160001.34020K562TRIM56
NDUFB2ENSG00000090266.81721.553802251.91720-0.387404.427902.65400K562UBE2L3
NDUFB2ENSG00000090266.8510.22200847.36230-0.7319011.8015010.44610K562UPF1
NDUFB2ENSG00000090266.8530.55930725.06720-0.450603.784702.75890K562WDR3
NDUFB2ENSG00000090266.8608.16090753.94420-0.310002.844301.98650K562WDR43
NDUFB2ENSG00000090266.81294.772002340.20950-0.853906.436205.03360K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for NDUFB2 is not available on ENCORE database.





3 RBPs can affect the splicing of NDUFB2 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SENDUFB2ENSG00000090266.8chr7+1404018541404019211403967911403968741404026651404028100.577000.000520.08856includedK562HNRNPA1
SENDUFB2ENSG00000090266.8chr7+140400673140400759140396508140396642140402665140402810-0.134000.000680.07118excludedHepG2RBFOX2
A5SSNDUFB2ENSG00000090266.8chr7+140396787140396972140396787140396874140402665140402810-0.625000.001360.09759shorterK562FXR1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for NDUFB2 is not avaliable on ENCORE database.