HDHD3

General Information

Gene Name       : HDHD3
Gene ID             : ENSG00000119431.9
Essential Gene : No

Functions

Localization

Domains (AlphaFold: HDHD3)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878HDHD3ENSG00000119431.92.557.745.14ENCSR000AEF
HepG2HDHD3ENSG00000119431.918.6510.5214.58ENCSR985KAT
K562HDHD3ENSG00000119431.99.356.788.06ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for HDHD3 is not avaliable on ENCORE database.



Proteins bound to RNA
  • HDHD3 RNA is bound by 11 proteins.  







eCLIP assay for HDHD3 is not avaliable on ENCORE database.





11 proteins are bound to HDHD3 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr9116136636116136721-3'-UTR,intron-Distal5.085027.07194HepG2RBM15
chr9116136629116136725-3'-UTR,CDS,intron-Distal4.656855.85529K562RBM15
chr9116137989116138059-5'-UTR,intron-Distal3.471623.61733HepG2XPO5
chr9116137877116137933-5'-UTR,intron-Distal,intron-Proximal5.028434.62947HepG2AQR
chr9116138996116139019-5'-UTR,intron-Distal4.3089514.19213HepG2BUD13
chr9116139089116139228-5'-UTR,intron-Distal,intron-Proximal4.326433.86664K562DDX3X
chr9116137750116137826-5'-UTR,intron-Distal,intron-Proximal3.866173.54718K562PRPF8
chr9116138963116139010-5'-UTR,intron-Distal4.367984.93822HepG2SUPV3L1
chr9116138985116139011-5'-UTR,intron-Distal3.478509.21862HepG2PPIG
chr9116138963116139011-5'-UTR,intron-Distal4.4558238.81062HepG2PRPF8
chr9116137826116137876-5'-UTR,intron-Distal,intron-Proximal3.249703.20348K562PRPF8
chr9116137731116137807-5'-UTR,intron-Distal,intron-Proximal4.088365.93840HepG2PRPF8
chr9116138987116139011-5'-UTR,intron-Distal4.644479.80019K562AQR
chr9116139091116139215-5'-UTR,intron-Distal,intron-Proximal3.309364.56702HepG2SRSF1
chr9116137831116137909-5'-UTR,intron-Distal,intron-Proximal4.0302716.14436HepG2BUD13
chr9116137819116137877-5'-UTR,intron-Distal,intron-Proximal4.5783214.69272HepG2AQR
chr9116139159116139215-5'-UTR,intron-Distal,intron-Proximal3.877435.01580HepG2DDX3X
chr9116139156116139229-5'-UTR,intron-Distal,intron-Proximal4.042896.88952HepG2NCBP2
chr9116137816116137882-5'-UTR,intron-Distal,intron-Proximal5.7895810.84943K562AQR
chr9116136101116136160-CDS,intron-Distal,intron-Proximal5.020656.83671HepG2RBM15
chr9116138962116138987-intron-Distal5.112279.56266K562AQR
chr9116138914116138955-intron-Distal4.566479.76577HepG2PRPF8
chr9116138821116138903-intron-Distal3.247843.11118HepG2PRPF4
chr9116138965116138996-intron-Distal4.3072814.67689HepG2BUD13
chr9116138962116138985-intron-Distal4.205189.27186HepG2PPIG
chr9116138913116138950-intron-Distal5.171966.23414HepG2BUD13
chr9116138967116139009-intron-Distal4.9514268.00943HepG2AQR
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for HDHD3 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for HDHD3 is not available on ENCORE database.

  • 79 RBPs can affect the levels of HDHD3.  








The Knockdown/knockout RNA-Seq assay for HDHD3 is not available on ENCORE database.





79 RBPs can affect the gene expression of HDHD3 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
HDHD3ENSG00000119431.5170.27430292.40210-0.780104.673703.31340HepG2AATF
HDHD3ENSG00000119431.5254.33860451.42060-0.827703.307602.65270HepG2ACO1
HDHD3ENSG00000119431.5372.77380874.69770-1.2305014.4684013.35050HepG2AKAP1
HDHD3ENSG00000119431.5485.47000289.239700.747004.184903.03400HepG2BCCIP
HDHD3ENSG00000119431.5442.36080251.296800.815705.173803.98010HepG2BCLAF1
HDHD3ENSG00000119431.5216.61240146.866000.560502.283801.73470HepG2BOP1
HDHD3ENSG00000119431.5249.32090134.829000.886804.943004.04710HepG2CPSF6
HDHD3ENSG00000119431.5338.81020203.612600.734603.736702.55040HepG2YBX3
HDHD3ENSG00000119431.5522.48470322.206200.697305.878704.93060HepG2DDX21
HDHD3ENSG00000119431.5347.03900192.833600.847606.564605.10490HepG2DHX30
HDHD3ENSG00000119431.5774.40970431.844400.842509.502508.39980HepG2DKC1
HDHD3ENSG00000119431.5352.44350199.930800.817807.159206.07060HepG2DNAJC21
HDHD3ENSG00000119431.5336.77720198.167600.765007.294306.30450HepG2DNAJC2
HDHD3ENSG00000119431.5409.59410744.51380-0.862106.401905.38680HepG2EIF4B
HDHD3ENSG00000119431.5253.83980412.20190-0.699404.018003.10470HepG2FIP1L1
HDHD3ENSG00000119431.5350.73890236.700200.567202.569901.34270HepG2FKBP4
HDHD3ENSG00000119431.5496.17100771.58770-0.637005.160904.23610HepG2FXR1
HDHD3ENSG00000119431.5528.13610152.834001.7888022.4534020.82000HepG2GPKOW
HDHD3ENSG00000119431.5465.41820201.846201.2052012.0042010.81160HepG2HNRNPA1
HDHD3ENSG00000119431.5308.27130224.517300.457302.011401.40970HepG2HNRNPC
HDHD3ENSG00000119431.5456.59240223.995201.0273012.4750011.09980HepG2HNRNPF
HDHD3ENSG00000119431.5475.28350724.90800-0.609005.032404.11100HepG2HNRNPK
HDHD3ENSG00000119431.5411.26410145.852801.4955013.3962012.15170HepG2HNRNPLL
HDHD3ENSG00000119431.5522.79130220.567201.2449016.6900015.08120HepG2IGF2BP1
HDHD3ENSG00000119431.5400.49780682.79390-0.769702.519101.58600HepG2IGF2BP3
HDHD3ENSG00000119431.5332.20110227.820600.544104.085503.21160HepG2ILF2
HDHD3ENSG00000119431.5431.47570276.255900.643203.228701.78380HepG2ILF3
HDHD3ENSG00000119431.5426.82010776.14620-0.862707.826706.80750HepG2MATR3
HDHD3ENSG00000119431.5467.76820333.468200.488102.756501.94980HepG2MSI2
HDHD3ENSG00000119431.5284.08300148.762300.933202.585401.65240HepG2MTPAP
HDHD3ENSG00000119431.5372.35020254.455700.549103.303801.75980HepG2NIP7
HDHD3ENSG00000119431.5204.83100129.330200.663302.580401.85660HepG2NSUN2
HDHD3ENSG00000119431.5478.37880700.08960-0.549406.456405.58970HepG2PCBP1
HDHD3ENSG00000119431.5289.51290198.927400.541303.259602.46480HepG2PPIL4
HDHD3ENSG00000119431.5501.89500712.34770-0.505205.472704.75800HepG2PTBP1
HDHD3ENSG00000119431.5629.57780497.676500.339102.598301.94780HepG2PUM2
HDHD3ENSG00000119431.5149.83380275.29680-0.877603.489402.69970HepG2RAVER1
HDHD3ENSG00000119431.5360.97600600.17220-0.733508.066207.28990HepG2RBM22
HDHD3ENSG00000119431.5907.60150700.199100.374202.853902.17090HepG2RBM25
HDHD3ENSG00000119431.5634.81630792.79090-0.320602.655502.12320HepG2NELFE
HDHD3ENSG00000119431.5553.59120738.34740-0.415503.989803.26700HepG2RECQL
HDHD3ENSG00000119431.5497.22270241.358401.0426010.249509.07860HepG2RPLP0
HDHD3ENSG00000119431.5401.33880270.628300.568402.582501.66810HepG2RPS10
HDHD3ENSG00000119431.5439.58340312.961000.490102.714701.92060HepG2RPS2
HDHD3ENSG00000119431.5645.29370284.701801.1804011.215909.64760HepG2RPS3A
HDHD3ENSG00000119431.5305.57940198.620200.621404.395303.61610HepG2SAFB2
HDHD3ENSG00000119431.5317.81920477.96430-0.588702.985702.28440HepG2SF3A3
HDHD3ENSG00000119431.5620.05400449.953100.462503.618702.83360HepG2SLBP
HDHD3ENSG00000119431.5499.18060677.86440-0.441404.250003.66800HepG2SRFBP1
HDHD3ENSG00000119431.5421.57970774.14010-0.8768014.1855013.29290HepG2SRSF1
HDHD3ENSG00000119431.5471.82960220.081901.1001014.3568012.98780HepG2SRSF7
HDHD3ENSG00000119431.5474.14590629.79190-0.409503.921403.28740HepG2SRSF9
HDHD3ENSG00000119431.51110.18340588.532700.9155021.2899020.15970HepG2SSB
HDHD3ENSG00000119431.5629.21250283.089901.1522010.235109.07090HepG2SUPV3L1
HDHD3ENSG00000119431.5464.08840695.78750-0.584206.222905.43960HepG2TAF15
HDHD3ENSG00000119431.5467.76210639.37620-0.450902.418601.63530HepG2TIA1
HDHD3ENSG00000119431.5538.98620216.715301.3143019.5401018.43160HepG2TIAL1
HDHD3ENSG00000119431.5246.80900167.213400.561602.346101.64560HepG2UCHL5
HDHD3ENSG00000119431.5555.16880423.880800.389203.175002.43730HepG2UPF1
HDHD3ENSG00000119431.5543.34870259.159901.067907.064105.41890HepG2UPF2
HDHD3ENSG00000119431.5288.59040409.24090-0.503903.617302.94790HepG2UTP3
HDHD3ENSG00000119431.5387.40760255.018600.603103.043501.88780HepG2XPO5
HDHD3ENSG00000119431.5670.08300278.671701.2657013.6503012.05690HepG2XRN2
HDHD3ENSG00000119431.5239.50400153.591000.640902.242801.30550K562CNOT7
HDHD3ENSG00000119431.5150.6690068.296101.141405.366004.28250K562CPSF6
HDHD3ENSG00000119431.5225.06790362.21280-0.686504.086502.89190K562CELF1
HDHD3ENSG00000119431.5292.01030174.228000.744905.435604.56680K562DDX47
HDHD3ENSG00000119431.5293.74510213.015300.463502.528601.83500K562EIF2S2
HDHD3ENSG00000119431.5135.2683075.802500.835403.032602.19980K562EIF3G
HDHD3ENSG00000119431.5146.4076089.586800.708502.118601.39590K562EIF4A3
HDHD3ENSG00000119431.5109.7965058.930600.897602.852301.92380K562FTO
HDHD3ENSG00000119431.5184.2520093.164500.983705.268604.47120K562FXR1
HDHD3ENSG00000119431.5107.0748065.195700.715702.002701.32410K562GPKOW
HDHD3ENSG00000119431.5518.22190283.876600.868208.089806.78600K562GRSF1
HDHD3ENSG00000119431.5107.8689063.642600.761102.167101.39100K562METAP2
HDHD3ENSG00000119431.558.77520124.94950-1.088103.482402.46720K562NAA15
HDHD3ENSG00000119431.5159.5939089.147500.840004.089203.29800K562PTBP1
HDHD3ENSG00000119431.584.97890148.71440-0.807403.055402.48930K562PUS1
HDHD3ENSG00000119431.599.13780144.88500-0.547401.822401.32320K562RBM15
HDHD3ENSG00000119431.5176.49470269.18310-0.609003.054501.36310K562RBM17
HDHD3ENSG00000119431.5218.47530112.217400.961104.466103.42480K562RPS19
HDHD3ENSG00000119431.586.85710148.17120-0.770602.712001.47650K562STAU1
HDHD3ENSG00000119431.5270.65290175.271200.626803.820802.98870K562UPF1
HDHD3ENSG00000119431.5224.89760332.14140-0.562503.410102.43670K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for HDHD3 is not available on ENCORE database.






No RBPs affect the alternative splcing events of HDHD3 on ENCORE database.





The Knockdown/knockout RNA-Seq assay for HDHD3 is not avaliable on ENCORE database.