GTF2H2C

General Information

Gene Name       : GTF2H2C
Gene ID             : ENSG00000183474.15
Essential Gene : Yes

Functions

Localization

Domains (AlphaFold: GTF2H2C)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878GTF2H2CENSG00000183474.1561.5852.9657.27ENCSR000AEF
HepG2GTF2H2CENSG00000183474.1526.2041.8534.02ENCSR985KAT
K562GTF2H2CENSG00000183474.1553.8359.0256.42ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for GTF2H2C is not avaliable on ENCORE database.



Proteins bound to RNA
  • GTF2H2C RNA is bound by 3 proteins.  







eCLIP assay for GTF2H2C is not avaliable on ENCORE database.





3 proteins are bound to GTF2H2C RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr56886827068868339+3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal4.033785.35703HepG2BCLAF1
chr56886896568869045+intron-Distal3.828263.19026HepG2HNRNPL
chr56887726968877360+intron-Distal4.416056.13339K562KHSRP
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for GTF2H2C is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for GTF2H2C is not available on ENCORE database.

  • 73 RBPs can affect the levels of GTF2H2C.  








The Knockdown/knockout RNA-Seq assay for GTF2H2C is not available on ENCORE database.





73 RBPs can affect the gene expression of GTF2H2C :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
GTF2H2CENSG00000183474.11538.16380719.73720-0.419404.123703.20060HepG2AKAP8L
GTF2H2CENSG00000183474.11988.486601231.59950-0.317203.556102.79490HepG2AUH
GTF2H2CENSG00000183474.11369.01170505.97500-0.455402.648101.44690HepG2BUD13
GTF2H2CENSG00000183474.11438.38030567.36630-0.372101.997801.40290HepG2CPSF6
GTF2H2CENSG00000183474.11700.58370961.59350-0.456906.083105.04430HepG2DAZAP1
GTF2H2CENSG00000183474.11714.04970505.515300.498202.572201.69450HepG2DDX24
GTF2H2CENSG00000183474.11394.91460718.61320-0.863702.798402.17720HepG2DDX6
GTF2H2CENSG00000183474.111068.13350743.515200.522601.901801.32400HepG2EIF4B
GTF2H2CENSG00000183474.111157.72200568.304001.026502.698001.69390HepG2FTO
GTF2H2CENSG00000183474.111142.88350758.564000.591203.308502.32800HepG2G3BP2
GTF2H2CENSG00000183474.11573.15250708.64670-0.306101.958201.34790HepG2HNRNPF
GTF2H2CENSG00000183474.11710.67360875.89560-0.301602.808102.12980HepG2HNRNPL
GTF2H2CENSG00000183474.11560.79240697.81600-0.315402.138401.49610HepG2IGF2BP1
GTF2H2CENSG00000183474.11461.59650571.32890-0.307702.457501.76240HepG2ILF2
GTF2H2CENSG00000183474.11748.85070953.52170-0.348602.824702.05270HepG2NOL12
GTF2H2CENSG00000183474.11447.47500553.61300-0.307102.051901.31330HepG2PARN
GTF2H2CENSG00000183474.11565.26270692.43280-0.292802.373401.80230HepG2PCBP1
GTF2H2CENSG00000183474.11391.86600498.87010-0.348302.289701.61210HepG2PPIL4
GTF2H2CENSG00000183474.111114.98820966.325200.206302.240301.69470HepG2PUM1
GTF2H2CENSG00000183474.11744.09570965.59110-0.375903.023602.32190HepG2PUM2
GTF2H2CENSG00000183474.111044.07570784.113400.413004.092303.45770HepG2NELFE
GTF2H2CENSG00000183474.11918.80420730.229100.331302.900602.27080HepG2RECQL
GTF2H2CENSG00000183474.11524.84320694.24720-0.403602.112801.52230HepG2SF3A3
GTF2H2CENSG00000183474.11712.98780872.88940-0.291902.508701.83610HepG2SLBP
GTF2H2CENSG00000183474.11422.08970580.84220-0.460604.589603.79650HepG2SMN1
GTF2H2CENSG00000183474.111077.239701334.89410-0.309403.420802.88150HepG2SRFBP1
GTF2H2CENSG00000183474.111201.48690765.674700.6499011.1437010.33250HepG2SRSF1
GTF2H2CENSG00000183474.111357.940501158.989200.228502.240901.76840HepG2SSB
GTF2H2CENSG00000183474.11924.09340724.134100.351702.212301.59820HepG2SUPV3L1
GTF2H2CENSG00000183474.11957.67690688.129500.476803.649403.02040HepG2TAF15
GTF2H2CENSG00000183474.11393.42850548.35170-0.479004.479003.79630HepG2TRIM56
GTF2H2CENSG00000183474.11728.50140583.305800.320601.864601.33790HepG2U2AF1
GTF2H2CENSG00000183474.11284.23920427.79650-0.589803.473702.62750HepG2UCHL5
GTF2H2CENSG00000183474.11782.56250594.427200.396603.119802.49030HepG2UTP3
GTF2H2CENSG00000183474.11727.22620599.397800.278802.252901.63860HepG2ZC3H8
GTF2H2CENSG00000183474.11529.42150677.14330-0.355003.445102.85380HepG2ZNF622
GTF2H2CENSG00000183474.111017.265201333.95010-0.391005.135004.40150K562AGGF1
GTF2H2CENSG00000183474.11932.343201388.01840-0.574105.120004.21950K562AKAP8L
GTF2H2CENSG00000183474.111544.346002416.03690-0.645605.490604.71320K562AQR
GTF2H2CENSG00000183474.111238.274601620.86690-0.388405.002303.14150K562BCCIP
GTF2H2CENSG00000183474.111148.529401566.29110-0.447607.330405.74110K562BCLAF1
GTF2H2CENSG00000183474.11810.974501210.43270-0.577804.390503.28350K562BOP1
GTF2H2CENSG00000183474.111139.136901620.00230-0.508102.446701.45810K562CNOT7
GTF2H2CENSG00000183474.11578.616501287.08900-1.1534015.3761013.49170K562CPSF6
GTF2H2CENSG00000183474.11876.487501188.26510-0.439105.206503.69290K562CSTF2
GTF2H2CENSG00000183474.111177.885001453.46230-0.303303.388602.04680K562DDX21
GTF2H2CENSG00000183474.112810.218302011.773400.4821010.295809.12920K562DDX47
GTF2H2CENSG00000183474.11946.068301401.19590-0.566602.342601.50420K562EFTUD2
GTF2H2CENSG00000183474.11822.993101012.53450-0.299002.914801.66720K562EIF2S1
GTF2H2CENSG00000183474.111186.398401952.00860-0.7184011.274509.96690K562EIF2S2
GTF2H2CENSG00000183474.11886.08930590.269700.586002.884801.85500K562EIF3A
GTF2H2CENSG00000183474.111624.039101242.573300.386204.620203.60400K562EIF3G
GTF2H2CENSG00000183474.111240.024301619.53230-0.385203.324202.38870K562FIP1L1
GTF2H2CENSG00000183474.11909.900801309.48240-0.525204.887003.74430K562FMR1
GTF2H2CENSG00000183474.11806.774801109.86100-0.460103.576802.52610K562FTO
GTF2H2CENSG00000183474.111601.438301001.626800.6769013.1682011.94780K562FXR1
GTF2H2CENSG00000183474.111716.041801105.605500.634105.299304.24980K562G3BP2
GTF2H2CENSG00000183474.11651.827801228.89460-0.9148010.655109.08080K562GPKOW
GTF2H2CENSG00000183474.111713.566602601.47180-0.602307.119205.89720K562GRSF1
GTF2H2CENSG00000183474.11580.415201000.26760-0.7852010.381909.28500K562HNRNPC
GTF2H2CENSG00000183474.11701.62100893.24430-0.348402.368601.32640K562HNRNPF
GTF2H2CENSG00000183474.111117.312201410.06520-0.335702.579001.55450K562MAK16
GTF2H2CENSG00000183474.111204.625501650.22950-0.454105.214303.88310K562MBNL1
GTF2H2CENSG00000183474.11903.502501199.52080-0.408903.396502.42210K562METAP2
GTF2H2CENSG00000183474.111318.551901570.07540-0.251903.576002.73880K562NSUN2
GTF2H2CENSG00000183474.11946.542701297.42940-0.454903.502202.56590K562PCBP3
GTF2H2CENSG00000183474.11808.95930995.16790-0.298902.221501.50370K562POLR2G
GTF2H2CENSG00000183474.111394.331401838.60780-0.399003.446702.51590K562PPIG
GTF2H2CENSG00000183474.11720.47230896.84580-0.315902.173101.38050K562PSIP1
GTF2H2CENSG00000183474.111610.820701286.748200.324003.030802.33940K562PTBP1
GTF2H2CENSG00000183474.114111.047303351.117700.294803.809002.53760K562PUM1
GTF2H2CENSG00000183474.111027.433901376.65600-0.422103.979603.34560K562PUS1
GTF2H2CENSG00000183474.111035.729901341.24230-0.372904.079603.37670K562RBM15
GTF2H2CENSG00000183474.111102.051601549.13140-0.491307.637306.33510K562SF3A3
GTF2H2CENSG00000183474.11954.454201516.26730-0.667804.744802.40420K562SMN1
GTF2H2CENSG00000183474.111456.75800998.185800.545307.451506.09050K562SYNCRIP
GTF2H2CENSG00000183474.11873.992101276.69890-0.546705.376904.37300K562TARDBP
GTF2H2CENSG00000183474.11996.230101231.50190-0.305902.452801.68720K562TIA1
GTF2H2CENSG00000183474.11925.563301397.55890-0.594502.394601.45410K562UCHL5
GTF2H2CENSG00000183474.111237.741701664.77720-0.427607.251206.15380K562UPF1
GTF2H2CENSG00000183474.111080.920401424.50870-0.398204.045202.98090K562WDR3
GTF2H2CENSG00000183474.111568.538301010.724200.633903.152201.44320K562XRCC6
GTF2H2CENSG00000183474.111992.058502722.09040-0.450503.360702.39730K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for GTF2H2C is not available on ENCORE database.





16 RBPs can affect the splicing of GTF2H2C :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEGTF2H2CENSG00000183474.11chr5+6886355368863604688627936886288068863979688640340.463000.000110.01549includedHepG2G3BP1
SEGTF2H2CENSG00000183474.11chr5+688635536886360468862793688628806886397968864034-0.415000.000000.00000excludedK562SF3B4
SEGTF2H2CENSG00000183474.11chr5+688635536886360468862793688628806886397968864034-0.657000.000030.00104excludedHepG2U2AF1
SEGTF2H2CENSG00000183474.11chr5+688584996885859768856073688562306886092668861015-0.527000.002980.05015excludedHepG2U2AF1
SEGTF2H2CENSG00000183474.11chr5+6886355368863604688627936886288068863979688640340.338000.001540.09958includedHepG2TBRG4
SEGTF2H2CENSG00000183474.11chr5+688635536886360468862793688628806886397968864034-0.765000.000000.00000excludedHepG2U2AF2
SEGTF2H2CENSG00000183474.11chr5+6886355368863604688627936886288068863979688640340.298000.000780.04789includedHepG2AKAP1
SEGTF2H2CENSG00000183474.11chr5+688635536886360468862793688628806886397968864034-0.545000.000000.00000excludedK562AQR
SEGTF2H2CENSG00000183474.11chr5+688624156886245268861957688620356886279368862880-0.257000.000280.00415excludedK562AQR
SEGTF2H2CENSG00000183474.11chr5+688584996885859768856073688562306886092668861015-0.266000.007720.06614excludedK562AQR
SEGTF2H2CENSG00000183474.11chr5+6886355368863604688627936886288068863979688640340.336000.000340.03181includedHepG2DDX3X
SEGTF2H2CENSG00000183474.11chr5+6886355368863604688627936886288068863979688640340.457000.000020.02035includedHepG2LIN28B
SEGTF2H2CENSG00000183474.11chr5+688635536886360468862793688628806886397968864034-0.256000.000550.01040excludedK562PUS1
SEGTF2H2CENSG00000183474.11chr5+688635536886360468862793688628806886397968864034-0.422000.000000.00000excludedK562U2AF1
SEGTF2H2CENSG00000183474.11chr5+688624156886245268861957688620356886279368862880-0.316000.004730.07799excludedK562U2AF1
SEGTF2H2CENSG00000183474.11chr5+688635536886360468862793688628806886397968864034-0.442000.000000.00000excludedK562HNRNPL
SEGTF2H2CENSG00000183474.11chr5+688635536886360468862793688628806886397968864034-0.434000.000500.01777excludedHepG2SF3A3
SEGTF2H2CENSG00000183474.11chr5+6886355368863604688627936886288068863979688640340.466000.000010.00123includedHepG2IGF2BP3
SEGTF2H2CENSG00000183474.11chr5+688635536886360468862793688628806886397968864034-0.383000.000000.00000excludedK562U2AF2
SEGTF2H2CENSG00000183474.11chr5+688624156886245268861957688620356886279368862880-0.411000.000340.00804excludedK562U2AF2
SEGTF2H2CENSG00000183474.11chr5+688635536886360468862793688628806886397968864034-0.275000.000620.02565excludedK562TARDBP
SEGTF2H2CENSG00000183474.11chr5+688584996885859768856073688562306886092668861015-0.329000.002800.08216excludedK562HNRNPU
SEGTF2H2CENSG00000183474.11chr5+688635536886360468862793688628806886397968864034-0.545000.000000.00005excludedK562SF3B1
MXEGTF2H2CENSG00000183474.11chr5+6886355368863604688639796886403468862793688628806886827168868377-0.241000.000500.029812includedK562SF3B1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for GTF2H2C is not avaliable on ENCORE database.