GGPS1

General Information

Gene Name       : GGPS1
Gene ID             : ENSG00000152904.11
Essential Gene : Yes

Functions

Localization

Domains (AlphaFold: GGPS1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878GGPS1ENSG00000152904.1114.7216.8415.78ENCSR000AEF
HepG2GGPS1ENSG00000152904.1112.6024.5318.57ENCSR985KAT
K562GGPS1ENSG00000152904.1152.1147.3249.72ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for GGPS1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • GGPS1 RNA is bound by 6 proteins.  







eCLIP assay for GGPS1 is not avaliable on ENCORE database.





6 proteins are bound to GGPS1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr1235506220235506273+3'-UTR3.7071012.34851K562PUM2
chr1235505022235505086+3'-UTR,CDS,intron-Proximal3.271133.07714K562YBX3
chr1235491894235491967+5'-UTR,intron-Distal,intron-Proximal3.210774.32211K562DDX3X
chr1235505388235505453+CDS3.901093.27203K562IGF2BP2
chr1235495514235495589+intron-Distal3.752265.29549HepG2HNRNPL
chr1235492243235492330+intron-Distal,intron-Proximal3.423373.91530HepG2PRPF4
chr1235492113235492186+intron-Distal,intron-Proximal4.118383.86417HepG2PRPF4
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for GGPS1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for GGPS1 is not available on ENCORE database.

  • 88 RBPs can affect the levels of GGPS1.  








The Knockdown/knockout RNA-Seq assay for GGPS1 is not available on ENCORE database.





88 RBPs can affect the gene expression of GGPS1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
GGPS1ENSG00000152904.7587.54850901.38920-0.617404.940703.71780HepG2ABCF1
GGPS1ENSG00000152904.7682.53390821.35340-0.267102.298401.73460HepG2ACO1
GGPS1ENSG00000152904.71302.242601828.09380-0.489303.675303.07430HepG2AKAP1
GGPS1ENSG00000152904.7943.71790775.717500.282702.037101.36820HepG2CALR
GGPS1ENSG00000152904.7767.433201031.81760-0.427102.391101.49160HepG2CCAR1
GGPS1ENSG00000152904.7618.45340821.26960-0.409204.836704.00380HepG2CKAP4
GGPS1ENSG00000152904.7753.38780542.703100.473103.356702.60760HepG2CPSF6
GGPS1ENSG00000152904.7791.532601022.47260-0.369303.938603.19640HepG2CELF1
GGPS1ENSG00000152904.7556.99360759.67780-0.447705.561404.43090HepG2DDX19B
GGPS1ENSG00000152904.7873.881501504.23160-0.783508.194607.18400HepG2DDX6
GGPS1ENSG00000152904.7471.30230634.93280-0.430004.590003.78630HepG2DNAJC2
GGPS1ENSG00000152904.71063.780901446.15510-0.443003.443402.78550HepG2EIF2S1
GGPS1ENSG00000152904.7480.73980683.79110-0.508304.335202.88080HepG2EIF2S2
GGPS1ENSG00000152904.71032.983001598.22000-0.629605.678604.76260HepG2EIF4A3
GGPS1ENSG00000152904.71077.369201555.99850-0.530303.460602.69450HepG2EIF4B
GGPS1ENSG00000152904.7594.16390910.18940-0.615304.470403.50900HepG2FIP1L1
GGPS1ENSG00000152904.7665.67990921.17040-0.468604.095703.14800HepG2FUBP3
GGPS1ENSG00000152904.7941.006701612.38960-0.776909.553708.33910HepG2FXR1
GGPS1ENSG00000152904.7978.369301495.80530-0.612505.729804.78570HepG2G3BP1
GGPS1ENSG00000152904.71022.343501587.88780-0.635206.853405.43830HepG2G3BP2
GGPS1ENSG00000152904.7364.22950509.63740-0.484602.948802.02200HepG2GEMIN5
GGPS1ENSG00000152904.7864.45760615.175500.490703.273502.58240HepG2GPKOW
GGPS1ENSG00000152904.7631.86230784.21480-0.311602.845201.85430HepG2HDGF
GGPS1ENSG00000152904.7871.666001514.45740-0.7970010.887609.58190HepG2HNRNPK
GGPS1ENSG00000152904.71050.39460587.075200.839209.842008.73800HepG2HNRNPLL
GGPS1ENSG00000152904.7387.28490627.99890-0.697406.832405.43700HepG2HNRNPM
GGPS1ENSG00000152904.7552.60870714.64080-0.371003.538202.86110HepG2HNRNPU
GGPS1ENSG00000152904.71092.523301529.29250-0.485203.209002.11810HepG2KHSRP
GGPS1ENSG00000152904.71049.766501612.95190-0.619606.185605.21240HepG2MAGOH
GGPS1ENSG00000152904.7712.180701622.00340-1.1875017.7623016.27520HepG2MATR3
GGPS1ENSG00000152904.7925.079501660.23010-0.8437010.406209.21840HepG2NCBP2
GGPS1ENSG00000152904.7877.434901090.24860-0.313302.722701.96520HepG2NOL12
GGPS1ENSG00000152904.7379.85960587.30540-0.628602.562001.51340HepG2NONO
GGPS1ENSG00000152904.7740.27450520.569500.507903.650902.79180HepG2NSUN2
GGPS1ENSG00000152904.71124.747501478.63270-0.394702.801202.07490HepG2PABPC4
GGPS1ENSG00000152904.7531.04580707.38910-0.413703.940302.94920HepG2PARN
GGPS1ENSG00000152904.7521.96680637.40490-0.288301.974801.34320HepG2PPIL4
GGPS1ENSG00000152904.7801.902701442.80790-0.8474011.9858011.00630HepG2PTBP1
GGPS1ENSG00000152904.7737.271401104.73820-0.5834011.5454010.50760HepG2PUM1
GGPS1ENSG00000152904.7967.019101562.80040-0.692508.685107.67290HepG2QKI
GGPS1ENSG00000152904.7965.726601418.26480-0.554405.641504.71130HepG2RBM25
GGPS1ENSG00000152904.7760.629301605.78610-1.0780017.0889015.96470HepG2NELFE
GGPS1ENSG00000152904.7792.626401495.42740-0.9158013.7766012.56300HepG2RECQL
GGPS1ENSG00000152904.7339.17060556.90660-0.715406.590005.68710HepG2RPS19
GGPS1ENSG00000152904.7803.053401097.04840-0.450102.397201.77080HepG2SF3A3
GGPS1ENSG00000152904.7975.663801502.32080-0.622707.631206.72780HepG2SF3B4
GGPS1ENSG00000152904.7562.44550742.19530-0.400104.390003.61300HepG2SMN1
GGPS1ENSG00000152904.7579.88640809.31670-0.480902.724901.77740HepG2SMNDC1
GGPS1ENSG00000152904.71422.576201182.078900.267103.180902.65590HepG2SRFBP1
GGPS1ENSG00000152904.7954.147901568.02760-0.716708.404307.68160HepG2SRSF1
GGPS1ENSG00000152904.7770.150901027.52250-0.416005.166204.35220HepG2SRSF5
GGPS1ENSG00000152904.71060.222101275.61370-0.266802.231501.72440HepG2SRSF9
GGPS1ENSG00000152904.7864.671301168.60350-0.434606.555205.66920HepG2SUCLG1
GGPS1ENSG00000152904.7903.64490636.768100.504903.457202.71160HepG2SUPV3L1
GGPS1ENSG00000152904.71087.335301409.21010-0.374103.424202.81080HepG2TAF15
GGPS1ENSG00000152904.7522.64030962.10820-0.880404.407803.08450HepG2TBRG4
GGPS1ENSG00000152904.7914.737501295.07820-0.501605.505404.33810HepG2TIA1
GGPS1ENSG00000152904.7822.145401000.02660-0.282602.503201.49940HepG2UTP18
GGPS1ENSG00000152904.7611.32000939.31110-0.619709.630908.62320HepG2UTP3
GGPS1ENSG00000152904.7922.096701070.01970-0.214602.056901.56650HepG2ZNF622
GGPS1ENSG00000152904.7967.468401563.75830-0.6927014.9550013.74450K562AGGF1
GGPS1ENSG00000152904.71835.640002491.62550-0.440804.837904.10110K562AQR
GGPS1ENSG00000152904.7486.96550669.96110-0.460303.265302.10160K562CCAR1
GGPS1ENSG00000152904.71069.860201345.77590-0.331002.826502.03600K562CPSF6
GGPS1ENSG00000152904.7895.407501134.54970-0.341502.892901.82790K562DDX3X
GGPS1ENSG00000152904.71885.929702285.25870-0.277103.473602.75490K562DDX47
GGPS1ENSG00000152904.7865.550901150.26470-0.410304.747902.87870K562DDX6
GGPS1ENSG00000152904.71311.106401550.18870-0.241702.303101.63770K562EIF2S2
GGPS1ENSG00000152904.71105.639301313.75520-0.248802.228101.50770K562EIF3G
GGPS1ENSG00000152904.7777.052501067.39350-0.458005.474503.76460K562EIF4B
GGPS1ENSG00000152904.72009.772202944.12940-0.5508011.364109.52150K562EIF4G2
GGPS1ENSG00000152904.7772.473001034.62240-0.421504.216102.57410K562EWSR1
GGPS1ENSG00000152904.7871.991001210.18630-0.472805.046403.28600K562EXOSC5
GGPS1ENSG00000152904.71203.700601913.09820-0.668403.061701.76080K562HNRNPA2B1
GGPS1ENSG00000152904.7835.617401221.14950-0.547306.084705.23290K562HNRNPC
GGPS1ENSG00000152904.71685.126802065.31950-0.293502.571401.55460K562HNRNPL
GGPS1ENSG00000152904.71322.466301658.48600-0.326603.614902.59470K562HNRNPU
GGPS1ENSG00000152904.71251.885501655.41690-0.403102.677101.67270K562IGF2BP2
GGPS1ENSG00000152904.71323.105201683.82430-0.347803.038701.77480K562IGF2BP3
GGPS1ENSG00000152904.71355.454801726.85130-0.349403.329302.41520K562KIF1C
GGPS1ENSG00000152904.71294.589701652.99100-0.352602.592901.56380K562MAK16
GGPS1ENSG00000152904.71430.349001832.39720-0.357406.923705.81810K562NSUN2
GGPS1ENSG00000152904.71510.549202193.28700-0.538003.275901.91600K562PABPC1
GGPS1ENSG00000152904.71078.593901674.03070-0.634202.780001.78730K562PABPN1
GGPS1ENSG00000152904.71069.324901548.08070-0.533806.127204.65520K562PCBP2
GGPS1ENSG00000152904.72301.502703025.16040-0.394404.723802.91030K562PNPT1
GGPS1ENSG00000152904.7832.389801094.87070-0.395402.976602.03340K562PSIP1
GGPS1ENSG00000152904.71131.923101613.76420-0.511705.567604.82910K562PUS1
GGPS1ENSG00000152904.71249.489801572.30610-0.331503.518902.86350K562RBM15
GGPS1ENSG00000152904.71152.618901620.94210-0.491905.212504.01630K562RBM22
GGPS1ENSG00000152904.7779.944901298.68460-0.735603.660102.10390K562RBM25
GGPS1ENSG00000152904.7808.00490998.84220-0.305902.229101.34280K562RCC2
GGPS1ENSG00000152904.71504.999401808.13400-0.264702.692501.88810K562SF3A3
GGPS1ENSG00000152904.71024.355601423.51010-0.474702.431901.63260K562SF3B4
GGPS1ENSG00000152904.7659.54410946.88450-0.521704.575803.16570K562SRFBP1
GGPS1ENSG00000152904.71341.762101657.13880-0.304602.678301.98140K562SRSF1
GGPS1ENSG00000152904.71155.623801565.01450-0.437504.078702.76140K562SRSF5
GGPS1ENSG00000152904.7963.202901184.31230-0.298102.445601.67500K562SYNCRIP
GGPS1ENSG00000152904.71244.847101617.80100-0.378103.764302.78870K562TIA1
GGPS1ENSG00000152904.71236.082701587.48570-0.361002.999701.85420K562TRA2A
GGPS1ENSG00000152904.7856.964101118.67960-0.384503.066502.06040K562TRIM56
GGPS1ENSG00000152904.71615.692601942.93100-0.266103.392202.60220K562UPF1
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for GGPS1 is not available on ENCORE database.





2 RBPs can affect the splicing of GGPS1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEGGPS1ENSG00000152904.7chr1+235498556235498649235491884235492093235505022235505093-0.114000.001050.06981excludedHepG2TIAL1
SEGGPS1ENSG00000152904.7chr1+2354985562354986492354918842354920932355050222355050930.053000.002510.08111includedK562SF3B1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for GGPS1 is not avaliable on ENCORE database.