DDX41

General Information

Gene Name       : DDX41
Gene ID             : ENSG00000183258.11
Essential Gene : Yes

Functions

Localization

Domains (AlphaFold: DDX41)


Antibody Validation

 View validation images for all DDX41 antibodies

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878DDX41ENSG00000183258.1122.7840.5131.64ENCSR000AEF
HepG2DDX41ENSG00000183258.11105.0735.7970.43ENCSR985KAT
K562DDX41ENSG00000183258.1181.8063.8172.81ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  
  GeneName    Antibody_DCC_ID    Product_ID    Lot_ID    Phosphate    HepG2 Primary Validation    K562 Primary Validation    HepG2 Secondary Validation    K562 Secondary Validation  
DDX4115076S1Submitted, ENCORE2BGHcLV43-13, Submitted, ENCORE2BGKcLV42-21, Submitted, ENCORE2
DDX41A301-050A2BGHcLV43-13, Submitted, ENCORE2BGKcLV42-21, Submitted, ENCORE2


  KD RNA-Seq  
  GeneName    Cell_Line    Method    Exp_ID    Control_ID    Sample_reps    Control_reps    KD%    Status    Project    Note  
DDX41K562CRISPRBGKcLV37-7,BGKcLV37-8BGKcLV37-1,BGKcLV37-248.9,38.1NotSatisfiedENCORE2
DDX41K562CRISPRBGKcLV40-5,BGKcLV40-6BGKcLV40-1,BGKcLV40-20.0,0.0NotSatisfiedENCORE2
DDX41K562CRISPRDDX41-BGKcLV42-21,DDX41-BGKcLV42-22NT-BGKcLV42-1,NT-BGKcLV42-288.2,88.0SequencedENCORE2
DDX41HepG2CRISPRBGHcLV39-3,BGHcLV39-4BGHcLV39-1,BGHcLV39-2NO BAND,NotSatisfiedENCORE2
DDX41HepG2CRISPRDDX41-BGHcLV43-13,DDX41-BGHcLV43-14NT-BGHcLV43-1,NT-BGHcLV43-285.0,84.2SequencedENCORE2


  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela
DDX41Product_ID: 15076S
Lot_ID: 1
Source: Cell Signaling Technology
Target Name: DDX41-human		 DDX41-HEPG2-CRISPR-15076S.png<br>Caption: Western blot following CRISPR against DDX41 in HepG2 whole cell lysate using DDX41 specific antibody. Lane 1 is a ladder, lane 2 is HepG2 non-targeting control knockdown, lane 3 and 4 are two different CRISPR against DDX41. DDX41 protein appears as the green arrow, Beta-actin serves as a control and appears in red arrow.
 CST_15076S_1_DDX41.png<br>Caption: IP-WB analysis of 15076S whole cell lysate using the DDX41 specific antibody, 15076S. Lanes 1 and 2 are 2.5% of five million whole cell lysate input and 50% of IP enrichment, respectively, using a normal IgG antibody. Lane 3 is 50% of IP enrichment from five million whole cell lysate using the DDX41-specific antibody, 15076S. The same antibody was used to detect protein levels via Western blot. This antibody passes preliminary validation and will be further pursued for secondary validation. *NOTE* Protein sizes are taken from Genecards.org and are only estimates based on sequence. Actual protein size may differ based on protein characteristics and electrophoresis method used.
 DDX41-K562-CRISPR-15076S.png<br>Caption: Western blot following CRISPR against DDX41 in K562 whole cell lysate using DDX41 specific antibody. Lane 1 is a ladder, lane 2 is K562 non-targeting control knockdown, lane 3 and 4 are two different CRISPR against DDX41. DDX41 protein appears as the green arrow, Beta-actin serves as a control and appears in red arrow.
DDX41Product_ID: A301-050A
Lot_ID: 2
Source: Bethyl Labs
Target Name: DDX41-human		 DDX41-HEPG2-CRISPR-A301-050A.png<br>Caption: Western blot following CRISPR against DDX41 in HepG2 whole cell lysate using DDX41 specific antibody. Lane 1 is a ladder, lane 2 is HepG2 non-targeting control knockdown, lane 3 and 4 are two different CRISPR against DDX41. DDX41 protein appears as the green arrow, Beta-actin serves as a control and appears in red arrow.
 DDX41-K562-CRISPR-A301-050A.png<br>Caption: Western blot following CRISPR against DDX41 in K562 whole cell lysate using DDX41 specific antibody. Lane 1 is a ladder, lane 2 is K562 non-targeting control knockdown, lane 3 and 4 are two different CRISPR against DDX41. DDX41 protein appears as the green arrow, Beta-actin serves as a control and appears in red arrow.








RNA Targets

  • eCLIP assay for DDX41 is not avaliable on ENCORE database.



Proteins bound to RNA
  • DDX41 RNA is bound by 22 proteins.  







eCLIP assay for DDX41 is not avaliable on ENCORE database.





22 proteins are bound to DDX41 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr5176942739176942788-3'-UTR,CDS,intron-Distal,intron-Proximal3.677965.58370HepG2PPIG
chr5176943114176943188-3'-UTR,CDS,intron-Distal,intron-Proximal3.9661517.03155K562UCHL5
chr5176940808176940839-3'-UTR,CDS,intron-Distal,intron-Proximal3.094595.11643K562ZNF622
chr5176943129176943192-3'-UTR,CDS,intron-Distal,intron-Proximal3.127667.32462K562PUM1
chr5176942929176942990-3'-UTR,CDS,intron-Distal,intron-Proximal3.015656.01806K562GRWD1
chr5176942969176942988-3'-UTR,CDS,intron-Distal3.563896.21602K562ZNF622
chr5176942199176942246-3'-UTR,CDS,intron-Distal,intron-Proximal3.110164.84084K562ZNF800
chr5176942292176942330-3'-UTR,CDS,intron-Distal,intron-Proximal3.895954.08501K562U2AF2
chr5176942963176942987-3'-UTR,CDS,intron-Distal4.378834.59919HepG2AQR
chr5176941916176941982-3'-UTR,CDS,intron-Distal,intron-Proximal4.790405.27753K562METAP2
chr5176942306176942347-3'-UTR,CDS,intron-Distal,intron-Proximal3.405283.80334HepG2U2AF2
chr5176942929176942945-3'-UTR,CDS,intron-Distal,intron-Proximal4.498277.93948K562ZNF622
chr5176941922176941948-3'-UTR,CDS,intron-Distal,intron-Proximal3.331388.15573K562YBX3
chr5176942023176942048-3'-UTR,CDS,intron-Distal,intron-Proximal3.062483.22545HepG2PPIG
chr5176942188176942204-3'-UTR,CDS,intron-Distal4.261053.54498K562PUM1
chr5176942204176942260-3'-UTR,CDS,intron-Distal,intron-Proximal3.185407.53442K562PUM1
chr5176943118176943154-3'-UTR,CDS,intron-Distal,intron-Proximal3.452466.76654K562GRWD1
chr5176940368176940428-3'-UTR,CDS,intron-Distal,intron-Proximal3.6614710.86716K562ZNF622
chr5176943121176943145-3'-UTR,CDS,intron-Distal3.391863.80299HepG2GRWD1
chr5176943121176943186-3'-UTR,CDS,intron-Distal3.4201213.38101K562ZNF622
chr5176943154176943195-3'-UTR,CDS,intron-Distal,intron-Proximal3.696079.91773K562GRWD1
chr5176940359176940431-3'-UTR,CDS,intron-Distal,intron-Proximal3.912733.77473HepG2PABPN1
chr5176943136176943190-3'-UTR,CDS,intron-Distal,intron-Proximal3.469494.65667HepG2PPIG
chr5176940446176940482-3'-UTR,CDS,intron-Distal4.337604.91614HepG2GRWD1
chr5176943118176943136-3'-UTR,CDS,intron-Distal,intron-Proximal3.580573.66193HepG2PPIG
chr5176942744176942820-3'-UTR,CDS,intron-Distal,intron-Proximal3.337987.93146K562GRWD1
chr5176942216176942256-3'-UTR,CDS,intron-Distal,intron-Proximal4.596636.01390HepG2GRWD1
chr5176940367176940433-3'-UTR,CDS,intron-Distal,intron-Proximal4.741286.26332HepG2GRWD1
chr5176940756176940843-3'-UTR,CDS,intron-Distal,intron-Proximal3.410484.17822HepG2PPIG
chr5176942188176942216-3'-UTR,CDS,intron-Distal3.563204.41784HepG2GRWD1
chr5176940355176940448-3'-UTR,CDS,intron-Distal,intron-Proximal3.175116.52028HepG2PPIG
chr5176938727176938792-3'-UTR,intron-Distal3.713716.23335HepG2GRWD1
chr5176942759176942811-3'-UTR,CDS,intron-Distal,intron-Proximal3.463308.15265K562UCHL5
chr5176943145176943186-3'-UTR,CDS,intron-Distal4.389774.91614HepG2GRWD1
chr5176940635176940688-3'-UTR,CDS,intron-Distal,intron-Proximal3.638056.29405HepG2PRPF8
chr5176942019176942053-3'-UTR,CDS,intron-Distal,intron-Proximal3.728336.44455K562ZNF622
chr5176940360176940413-3'-UTR,CDS,intron-Distal,intron-Proximal3.693364.89070K562UCHL5
chr5176943317176943377-5'-UTR,CDS,intron-Distal,intron-Proximal3.165563.56169K562RBM15
chr5176943404176943448-5'-UTR,CDS,intron-Distal,intron-Proximal3.281047.92720K562ZNF622
chr5176943299176943409-5'-UTR,CDS,intron-Distal,intron-Proximal3.920788.76261HepG2GRWD1
chr5176943305176943382-5'-UTR,CDS,intron-Distal,intron-Proximal3.7728714.18904K562ZNF622
chr5176943314176943419-5'-UTR,CDS,intron-Distal,intron-Proximal3.8310613.05803K562UCHL5
chr5176943507176943554-5'-UTR,CDS,intron-Distal,intron-Proximal3.373086.19583K562RBM15
chr5176943354176943441-5'-UTR,CDS,intron-Distal,intron-Proximal3.047323.68901K562TRA2A
chr5176943427176943448-5'-UTR,CDS,intron-Distal3.357097.21479K562UCHL5
chr5176942639176942687-CDS,intron-Distal,intron-Proximal5.0015026.08644HepG2PRPF8
chr5176943731176943795-CDS,intron-Distal3.4387614.79261K562ZNF622
chr5176938887176938927-CDS,intron-Distal3.232863.17744HepG2GRWD1
chr5176942665176942687-CDS,intron-Distal,intron-Proximal4.147559.89239HepG2AQR
chr5176939350176939395-CDS,intron-Distal,intron-Proximal3.653343.28107HepG2PABPN1
chr5176940011176940076-CDS,intron-Distal,intron-Proximal4.836733.99014HepG2PABPN1
chr5176942341176942390-CDS,intron-Distal,intron-Proximal4.624755.68078HepG2AQR
chr5176941803176941838-CDS,intron-Distal,intron-Proximal3.363074.45064HepG2GRWD1
chr5176942715176942732-CDS,intron-Distal,intron-Proximal3.313404.74241K562YBX3
chr5176939096176939143-CDS,intron-Distal,intron-Proximal4.584689.28243HepG2PPIG
chr5176942707176942741-CDS,intron-Distal,intron-Proximal4.027618.13606K562UCHL5
chr5176943725176943799-CDS,intron-Distal,intron-Proximal3.5401015.57419K562UCHL5
chr5176939325176939391-CDS,intron-Distal5.584689.15113HepG2PPIG
chr5176939356176939391-CDS,intron-Distal3.197463.79741HepG2GRWD1
chr5176940009176940077-CDS,intron-Distal,intron-Proximal3.977123.11282HepG2G3BP1
chr5176939531176939577-CDS,intron-Distal,intron-Proximal3.465243.03634HepG2PABPN1
chr5176940014176940070-CDS,intron-Distal,intron-Proximal3.133597.60260K562ZNF622
chr5176942646176942687-CDS,intron-Distal,intron-Proximal3.369307.07421HepG2BUD13
chr5176943799176943833-CDS,intron-Distal3.675107.10975K562UCHL5
chr5176939818176939869-CDS,intron-Distal3.844636.06009K562BUD13
chr5176942716176942751-CDS,intron-Distal,intron-Proximal3.584334.45064HepG2GRWD1
chr5176942710176942758-CDS,intron-Distal,intron-Proximal4.0425810.48558K562ZNF622
chr5176942341176942397-CDS,intron-Distal,intron-Proximal5.0944026.00625K562AQR
chr5176942330176942397-CDS,intron-Distal,intron-Proximal3.6146512.46074K562U2AF2
chr5176939781176939819-CDS,intron-Distal3.673684.77136HepG2PPIG
chr5176939788176939872-CDS,intron-Distal4.057024.02339HepG2PABPN1
chr5176939143176939200-CDS,intron-Distal4.384417.49899HepG2PPIG
chr5176942653176942702-CDS,intron-Distal,intron-Proximal3.544438.44067K562UCHL5
chr5176943723176943755-CDS,intron-Distal,intron-Proximal3.575724.24993HepG2PPIG
chr5176938895176938928-CDS,intron-Distal4.297646.64430HepG2PPIG
chr5176943724176943731-CDS,intron-Distal,intron-Proximal3.098703.80349K562ZNF622
chr5176941916176941922-CDS,intron-Distal,intron-Proximal3.030336.17212K562YBX3
chr5176941774176941803-CDS,intron-Distal,intron-Proximal4.033764.23295HepG2GRWD1
chr5176939833176939869-CDS,intron-Distal4.100484.12139K562DDX24
chr5176942343176942394-CDS,intron-Distal,intron-Proximal4.9962712.63563K562PRPF8
chr5176943767176943836-CDS,intron-Distal4.182608.83457HepG2GRWD1
chr5176939550176939559-CDS,intron-Distal,intron-Proximal3.548264.49347K562UCHL5
chr5176939866176939932-CDS,intron-Distal,intron-Proximal3.522646.26686K562SF3B4
chr5176942347176942397-CDS,intron-Distal,intron-Proximal4.2847811.18589HepG2U2AF2
chr5176940010176940061-CDS,intron-Distal,intron-Proximal4.650845.23259HepG2BCLAF1
chr5176942688176942751-CDS,intron-Distal,intron-Proximal3.370017.21256K562PUM1
chr5176942337176942396-CDS,intron-Distal,intron-Proximal4.270426.14698K562U2AF1
chr5176939819176939859-CDS,intron-Distal4.160684.96634HepG2PPIG
chr5176940321176940372-CDS,intron-Distal,intron-Proximal3.398616.82513HepG2PRPF8
chr5176943827176943837-CDS,intron-Distal,intron-Proximal3.287545.62120K562ZNF622
chr5176940009176940076-CDS,intron-Distal,intron-Proximal5.031788.09084HepG2PPIG
chr5176939784176939815-CDS,intron-Distal5.107735.34688K562DDX24
chr5176941752176941838-CDS,intron-Distal,intron-Proximal3.448156.00535K562METAP2
chr5176941654176941699-intron-Distal,intron-Proximal4.959986.69228HepG2PRPF8
chr5176942606176942631-intron-Distal,intron-Proximal6.4815116.94863K562AQR
chr5176939448176939497-intron-Distal,intron-Proximal5.438588.04585HepG2PRPF8
chr5176942648176942665-intron-Distal,intron-Proximal5.6684910.58731HepG2AQR
chr5176942631176942686-intron-Distal,intron-Proximal7.3891673.17062K562AQR
chr5176943048176943091-intron-Distal,intron-Proximal5.287979.06345K562UCHL5
chr5176943608176943701-intron-Distal,intron-Proximal4.310564.35475K562RBFOX2
chr5176942510176942565-intron-Distal3.169865.54603K562PRPF8
chr5176942639176942683-intron-Distal,intron-Proximal3.378186.12893K562BUD13
chr5176943617176943704-intron-Distal,intron-Proximal4.151934.55101HepG2PRPF4
chr5176942598176942683-intron-Distal,intron-Proximal4.2714311.78664K562PRPF8
chr5176941694176941701-intron-Distal,intron-Proximal6.1211214.27141K562AQR
chr5176941658176941694-intron-Distal,intron-Proximal6.2380415.35700K562AQR
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for DDX41 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for DDX41 is not available on ENCORE database.

  • 64 RBPs can affect the levels of DDX41.  








The Knockdown/knockout RNA-Seq assay for DDX41 is not available on ENCORE database.





64 RBPs can affect the gene expression of DDX41 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
DDX41ENSG00000183258.72294.166601377.332200.7360023.4429022.06420HepG2ACO1
DDX41ENSG00000183258.71087.539101383.70610-0.347504.364503.41640HepG2AKAP8L
DDX41ENSG00000183258.72067.275301493.705100.468708.749907.64230HepG2AUH
DDX41ENSG00000183258.7827.954701095.24350-0.403603.785902.90400HepG2CALR
DDX41ENSG00000183258.7705.337301043.73460-0.565405.702304.76550HepG2DDX21
DDX41ENSG00000183258.7614.307601022.15900-0.734609.281907.64100HepG2DDX24
DDX41ENSG00000183258.72063.879801114.460200.888905.906605.03310HepG2DDX6
DDX41ENSG00000183258.7942.116201317.70340-0.484007.275106.27310HepG2DKC1
DDX41ENSG00000183258.71379.072401070.958800.364702.438001.87970HepG2EIF2S1
DDX41ENSG00000183258.7766.89160986.16200-0.362802.869501.76960HepG2EIF3G
DDX41ENSG00000183258.71292.163201508.07850-0.222902.065801.32420HepG2EIF4G1
DDX41ENSG00000183258.72112.601101714.985200.300703.779703.09550HepG2ETF1
DDX41ENSG00000183258.71146.98890710.164800.6915010.180907.94200HepG2FAM120A
DDX41ENSG00000183258.71592.742701194.526700.415003.167102.42730HepG2FXR1
DDX41ENSG00000183258.71782.848501392.479400.356406.291105.31460HepG2HNRNPL
DDX41ENSG00000183258.7561.513601057.08300-0.912703.469402.36780HepG2IGF2BP3
DDX41ENSG00000183258.7435.01060700.57480-0.687502.559101.30170HepG2ILF3
DDX41ENSG00000183258.71847.732701201.539400.620805.785904.89920HepG2MATR3
DDX41ENSG00000183258.7746.363001060.59910-0.506902.642001.69790HepG2MTPAP
DDX41ENSG00000183258.71064.43440884.608700.266902.410401.61550HepG2PARN
DDX41ENSG00000183258.71273.821301534.87940-0.269002.313501.69850HepG2PUM2
DDX41ENSG00000183258.72396.389801771.942100.435406.180904.96220HepG2RBM15
DDX41ENSG00000183258.7996.658901433.40780-0.524307.308306.55960HepG2RBM22
DDX41ENSG00000183258.7654.979501054.86260-0.687507.577306.29720HepG2RPS2
DDX41ENSG00000183258.7668.663901074.18230-0.683904.441102.48860HepG2RTF1
DDX41ENSG00000183258.71019.17750795.868700.356704.230003.46260HepG2SAFB2
DDX41ENSG00000183258.72087.833301534.926100.443702.918702.22530HepG2SF3A3
DDX41ENSG00000183258.71091.81850928.135000.234202.401701.79690HepG2SMN1
DDX41ENSG00000183258.7964.598801155.71040-0.260802.384301.73500HepG2SRSF7
DDX41ENSG00000183258.7778.278401013.62360-0.381202.757702.03430HepG2TARDBP
DDX41ENSG00000183258.71492.37060876.131900.768305.362004.62770HepG2TRIM56
DDX41ENSG00000183258.7946.971001362.33720-0.524702.087201.53370HepG2U2AF1
DDX41ENSG00000183258.7804.34320593.809300.437703.054102.25860HepG2UCHL5
DDX41ENSG00000183258.73457.617802274.833800.6039017.7742016.45650K562AGGF1
DDX41ENSG00000183258.73547.960602367.076800.583808.817407.57880K562AKAP8L
DDX41ENSG00000183258.72903.114102483.650500.225002.436101.58350K562ATP5C1
DDX41ENSG00000183258.71501.163601779.43660-0.245301.992201.31820K562CPSF6
DDX41ENSG00000183258.73647.337804606.27830-0.336804.531703.27410K562CELF1
DDX41ENSG00000183258.71722.487001367.334100.333003.857702.23310K562DDX6
DDX41ENSG00000183258.73241.522202547.087000.347705.550604.25720K562DKC1
DDX41ENSG00000183258.71456.46070900.111600.6942012.0773010.39330K562EIF3G
DDX41ENSG00000183258.71565.426901268.854800.302903.100001.85900K562EIF4B
DDX41ENSG00000183258.71681.561201229.891400.451205.361903.45160K562EWSR1
DDX41ENSG00000183258.71483.716001810.65410-0.287302.074601.32980K562FMR1
DDX41ENSG00000183258.71101.967601534.74460-0.477904.054602.93240K562FTO
DDX41ENSG00000183258.71666.747301329.236700.326303.479801.45710K562FUBP3
DDX41ENSG00000183258.71860.273601465.281200.344204.419403.67900K562FXR1
DDX41ENSG00000183258.7395.80040834.57490-1.076303.553302.72880K562G3BP2
DDX41ENSG00000183258.71272.696001637.91860-0.364003.410502.75810K562HNRNPC
DDX41ENSG00000183258.71792.259401294.428300.469402.926401.86260K562IGF2BP2
DDX41ENSG00000183258.71059.762401396.98700-0.398603.029501.46010K562ILF3
DDX41ENSG00000183258.73343.759702512.028100.412505.409204.17470K562KIF1C
DDX41ENSG00000183258.71105.842101450.75660-0.391702.277501.43910K562KRR1
DDX41ENSG00000183258.73098.124102404.654900.365503.568302.29830K562MAK16
DDX41ENSG00000183258.73630.589702814.110500.367402.891601.95710K562MBNL1
DDX41ENSG00000183258.73283.286203993.01980-0.282302.409301.35860K562MSI2
DDX41ENSG00000183258.71875.572102321.57670-0.307804.743003.70690K562MTPAP
DDX41ENSG00000183258.72785.430401972.490400.497803.783002.70970K562NAA15
DDX41ENSG00000183258.73174.905701778.089600.836304.841603.42720K562PABPN1
DDX41ENSG00000183258.71861.312101438.766000.371402.896802.13060K562PRPF8
DDX41ENSG00000183258.73286.055404087.33210-0.314803.122302.25760K562PUF60
DDX41ENSG00000183258.73619.565104347.60620-0.264402.830501.74960K562PUM1
DDX41ENSG00000183258.73465.327104259.70430-0.297804.318703.11330K562PUM2
DDX41ENSG00000183258.74684.660702347.425700.996809.925808.94450K562PUS1
DDX41ENSG00000183258.73565.731302287.266500.6405015.1865013.78110K562RBM15
DDX41ENSG00000183258.72321.181501788.855600.375703.964202.65910K562SAFB
DDX41ENSG00000183258.72613.153001626.311500.684102.891501.64990K562SF1
DDX41ENSG00000183258.72984.790601867.403300.676502.978901.68800K562SNRNP200
DDX41ENSG00000183258.72444.259602013.747200.279402.784701.96270K562SYNCRIP
DDX41ENSG00000183258.71840.535701310.514500.489904.869703.91760K562TARDBP
DDX41ENSG00000183258.71581.077601264.191100.322602.442101.67840K562TIA1
DDX41ENSG00000183258.71665.670301241.015700.424503.799002.48500K562TRA2A
DDX41ENSG00000183258.72344.439002735.12500-0.222403.072102.31670K562UPF1
DDX41ENSG00000183258.72735.885303333.95970-0.285202.527201.71000K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for DDX41 is not available on ENCORE database.





41 RBPs can affect the splicing of DDX41 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEDDX41ENSG00000183258.7chr5-176940011176940083176939496176939877176940353176940485-0.079000.005950.08664excludedHepG2U2AF1
A3SSDDX41ENSG00000183258.7chr5-176943288176943517176943288176943448176943725176943836-0.325000.000010.00331shorterHepG2HNRNPU
A3SSDDX41ENSG00000183258.7chr5-1769421861769423621769421861769422591769426851769428220.074000.000200.04597longerHepG2PTBP1
A3SSDDX41ENSG00000183258.7chr5-1769421861769423621769421861769422591769426851769428220.140000.000000.00016longerK562EFTUD2
A3SSDDX41ENSG00000183258.7chr5-1769403531769405611769403531769404851769406851769408480.060000.000000.00065longerK562EFTUD2
A3SSDDX41ENSG00000183258.7chr5-176942186176942362176942186176942259176942685176942822-0.200000.000000.00086shorterHepG2HNRNPUL1
A3SSDDX41ENSG00000183258.7chr5-1769421861769423621769421861769422591769426851769428220.293000.000000.00000longerK562U2AF2
A3SSDDX41ENSG00000183258.7chr5-1769421861769423621769421861769422591769426851769428220.099000.000000.00012longerK562FXR1
A3SSDDX41ENSG00000183258.7chr5-1769421861769423621769421861769422591769426851769428220.093000.000030.00448longerHepG2SRSF1
A3SSDDX41ENSG00000183258.7chr5-176943288176943517176943288176943448176943725176943836-0.109000.000010.00060shorterHepG2U2AF2
A3SSDDX41ENSG00000183258.7chr5-1769421861769423621769421861769422591769426851769428220.107000.000010.00404longerHepG2NCBP2
A3SSDDX41ENSG00000183258.7chr5-176942186176942362176942186176942259176942685176942822-0.097000.000010.00581shorterK562DROSHA
A3SSDDX41ENSG00000183258.7chr5-1769421861769423621769421861769422591769426851769428220.121000.000000.00014longerHepG2TAF15
A3SSDDX41ENSG00000183258.7chr5-1769432881769435331769432881769434481769437251769438360.202000.000020.01262longerHepG2DDX6
A3SSDDX41ENSG00000183258.7chr5-176942186176942362176942186176942259176942685176942822-0.097000.000000.00294shorterK562HNRNPUL1
A3SSDDX41ENSG00000183258.7chr5-176943288176943517176943288176943448176943725176943836-0.306000.000150.03259shorterHepG2TIAL1
A3SSDDX41ENSG00000183258.7chr5-1769421861769423621769421861769422591769426851769428220.130000.000000.00001longerK562AQR
A3SSDDX41ENSG00000183258.7chr5-1769403531769405611769403531769404851769406851769408480.208000.000000.00000longerK562AQR
A3SSDDX41ENSG00000183258.7chr5-1769406851769408681769406851769408481769417011769418590.056000.000020.00019longerK562AQR
A3SSDDX41ENSG00000183258.7chr5-1769432881769435331769432881769434481769437251769439170.096000.000000.00000longerK562AQR
A3SSDDX41ENSG00000183258.7chr5-1769394961769396671769394961769396461769397801769398770.059000.000000.00003longerK562AQR
A3SSDDX41ENSG00000183258.7chr5-1769421861769423621769421861769422591769426851769428220.062000.000010.00055longerK562PUS1
A3SSDDX41ENSG00000183258.7chr5-1769432881769435171769432881769434481769437251769438360.063000.000000.00006longerK562PUS1
A3SSDDX41ENSG00000183258.7chr5-176942186176942362176942186176942259176942685176942822-0.217000.000000.00003shorterHepG2SFPQ
A3SSDDX41ENSG00000183258.7chr5-176943288176943517176943288176943448176943725176943836-0.091000.000010.00660shorterHepG2SFPQ
A3SSDDX41ENSG00000183258.7chr5-1769421861769423621769421861769422591769426851769428220.079000.000090.03933longerHepG2FTO
A3SSDDX41ENSG00000183258.7chr5-1769421861769423621769421861769422591769426851769428220.071000.000080.00439longerHepG2U2AF1
A3SSDDX41ENSG00000183258.7chr5-1769421861769423621769421861769422591769426851769428220.152000.000000.00000longerK562U2AF1
A3SSDDX41ENSG00000183258.7chr5-176942186176942362176942186176942259176942685176942822-0.068000.000000.00021shorterHepG2RBM15
A3SSDDX41ENSG00000183258.7chr5-1769421861769423621769421861769422591769426851769428220.087000.000080.01496longerHepG2PCBP1
A3SSDDX41ENSG00000183258.7chr5-1769421861769423621769421861769422591769426851769428220.125000.000000.00026longerHepG2SF3B4
A3SSDDX41ENSG00000183258.7chr5-1769421861769423621769421861769422591769426851769428220.110000.000030.00787longerK562PRPF8
RIDDX41ENSG00000183258.7chr5-176943288176943836176943288176943448176943725176943836-0.092000.000000.00012excludedHepG2SFPQ
RIDDX41ENSG00000183258.7chr5-176943288176943836176943288176943448176943725176943836-0.056000.001980.09580excludedK562NONO
RIDDX41ENSG00000183258.7chr5-1769429291769431941769429291769429901769431191769431940.079000.003710.04962includedK562SF3B4
RIDDX41ENSG00000183258.7chr5-1769432881769438361769432881769434481769437251769438360.205000.000010.00181includedHepG2DDX6
RIDDX41ENSG00000183258.7chr5-1769429291769431941769429291769429901769431191769431940.162000.000000.00000includedK562PUS1
RIDDX41ENSG00000183258.7chr5-1769403531769408481769403531769404851769406851769408480.145000.000000.00000includedK562PUS1
RIDDX41ENSG00000183258.7chr5-1769432881769438361769432881769434481769437251769438360.078000.000000.00000includedK562PUS1
RIDDX41ENSG00000183258.7chr5-1769403531769408481769403531769404851769406851769408480.077000.000840.01172includedHepG2SF3A3
RIDDX41ENSG00000183258.7chr5-1769429291769431941769429291769429901769431191769431940.051000.001390.01181includedHepG2U2AF2
RIDDX41ENSG00000183258.7chr5-1769403531769408481769403531769404851769406851769408480.295000.000000.00000includedHepG2U2AF2
RIDDX41ENSG00000183258.7chr5-176943288176943836176943288176943448176943725176943836-0.109000.000000.00001excludedHepG2U2AF2
RIDDX41ENSG00000183258.7chr5-176943288176943836176943288176943448176943725176943836-0.184000.000150.04111excludedHepG2XRCC6
RIDDX41ENSG00000183258.7chr5-1769403531769408481769403531769404851769406851769408480.121000.000130.03581includedK562DHX30
RIDDX41ENSG00000183258.7chr5-176943288176943836176943288176943448176943725176943836-0.120000.000010.00532excludedHepG2DKC1
RIDDX41ENSG00000183258.7chr5-1769429291769431941769429291769429901769431191769431940.083000.000000.00000includedK562AGGF1
RIDDX41ENSG00000183258.7chr5-1769403531769408481769403531769404851769406851769408480.082000.000010.00013includedK562AGGF1
RIDDX41ENSG00000183258.7chr5-1769432881769438361769432881769434481769437251769438360.060000.000000.00002includedK562AGGF1
RIDDX41ENSG00000183258.7chr5-1769429291769431941769429291769429901769431191769431940.058000.001510.02009includedK562PRPF8
RIDDX41ENSG00000183258.7chr5-1769403531769408481769403531769404851769406851769408480.075000.000000.00000includedK562PRPF8
RIDDX41ENSG00000183258.7chr5-1769394961769398771769394961769396461769397801769398770.053000.000070.00162includedK562PRPF8
RIDDX41ENSG00000183258.7chr5-1769403531769408481769403531769404851769406851769408480.240000.000000.00017includedHepG2IGF2BP3
RIDDX41ENSG00000183258.7chr5-176943288176943836176943288176943448176943725176943836-0.089000.000060.00366excludedHepG2MATR3
RIDDX41ENSG00000183258.7chr5-176943288176943836176943288176943448176943725176943836-0.154000.000270.05476excludedHepG2NOL12
RIDDX41ENSG00000183258.7chr5-1769403531769408481769403531769404851769406851769408480.147000.003960.07372includedHepG2FTO
RIDDX41ENSG00000183258.7chr5-1769394961769398771769394961769396461769397801769398770.081000.000000.00016includedHepG2PCBP1
RIDDX41ENSG00000183258.7chr5-176943288176943836176943288176943448176943725176943836-0.087000.004980.05461excludedHepG2PCBP1
RIDDX41ENSG00000183258.7chr5-176943288176943836176943288176943448176943725176943836-0.077000.009330.08122excludedHepG2QKI
RIDDX41ENSG00000183258.7chr5-176943288176943836176943288176943448176943725176943836-0.216000.000020.01549excludedHepG2TRA2A
RIDDX41ENSG00000183258.7chr5-176943288176943836176943288176943448176943725176943836-0.352000.000710.04081excludedHepG2HNRNPA1
RIDDX41ENSG00000183258.7chr5-1769403531769408481769403531769404851769406851769408480.063000.002380.09611includedK562BUD13
RIDDX41ENSG00000183258.7chr5-1769432881769438361769432881769434481769437251769438360.054000.002580.09944includedK562BUD13
RIDDX41ENSG00000183258.7chr5-1769429291769431941769429291769429901769431191769431940.108000.000000.00000includedK562AKAP8L
RIDDX41ENSG00000183258.7chr5-1769403531769408481769403531769404851769406851769408480.084000.000000.00003includedK562AKAP8L
RIDDX41ENSG00000183258.7chr5-1769429291769431941769429291769429901769431191769431940.083000.000230.00359includedHepG2TAF15
RIDDX41ENSG00000183258.7chr5-1769429291769431941769429291769429901769431191769431940.057000.000510.00651includedHepG2U2AF1
RIDDX41ENSG00000183258.7chr5-1769403531769408481769403531769404851769406851769408480.127000.000020.00045includedHepG2U2AF1
RIDDX41ENSG00000183258.7chr5-176943288176943836176943288176943448176943725176943836-0.066000.000470.00620excludedHepG2U2AF1
RIDDX41ENSG00000183258.7chr5-176943288176943836176943288176943448176943725176943836-0.058000.001780.06604excludedK562SUPV3L1
RIDDX41ENSG00000183258.7chr5-1769429291769431941769429291769429901769431191769431940.099000.000000.00000includedK562RBM15
RIDDX41ENSG00000183258.7chr5-1769403531769408481769403531769404851769406851769408480.081000.000000.00010includedK562RBM15
RIDDX41ENSG00000183258.7chr5-1769403531769408481769403531769404851769406851769408480.051000.000080.03049includedK562DDX24
RIDDX41ENSG00000183258.7chr5-1769429291769431941769429291769429901769431191769431940.120000.000130.00449includedK562U2AF1
RIDDX41ENSG00000183258.7chr5-1769429291769431941769429291769429901769431191769431940.147000.000240.00476includedK562U2AF2
RIDDX41ENSG00000183258.7chr5-176943288176943836176943288176943448176943725176943836-0.341000.000010.00180excludedHepG2HNRNPC
RIDDX41ENSG00000183258.7chr5-176943288176943836176943288176943448176943725176943836-0.391000.000000.00002excludedHepG2TIAL1
RIDDX41ENSG00000183258.7chr5-176943288176943836176943288176943448176943725176943836-0.078000.003280.03665excludedHepG2NCBP2
RIDDX41ENSG00000183258.7chr5-176943288176943836176943288176943448176943725176943836-0.374000.000000.00007excludedHepG2HNRNPU
RIDDX41ENSG00000183258.7chr5-176943288176943836176943288176943448176943725176943836-0.082000.006510.04373excludedHepG2SF3B4
RIDDX41ENSG00000183258.7chr5-1769429291769431941769429291769429901769431191769431940.059000.000470.00676includedHepG2RBM22
RIDDX41ENSG00000183258.7chr5-1769403531769408481769403531769404851769406851769408480.069000.000000.00014includedHepG2RBM22
RIDDX41ENSG00000183258.7chr5-1769394961769398771769394961769396461769397801769398770.066000.000960.01211includedHepG2RBM22
RIDDX41ENSG00000183258.7chr5-176943288176943836176943288176943448176943725176943836-0.088000.005890.09502excludedHepG2PTBP1
RIDDX41ENSG00000183258.7chr5-1769429291769431941769429291769429901769431191769431940.086000.000000.00000includedK562UTP18
RIDDX41ENSG00000183258.7chr5-1769403531769408481769403531769404851769406851769408480.094000.000010.00023includedK562UTP18
RIDDX41ENSG00000183258.7chr5-1769429291769431941769429291769429901769431191769431940.071000.000110.00194includedK562EFTUD2
RIDDX41ENSG00000183258.7chr5-1769403531769408481769403531769404851769406851769408480.090000.000000.00000includedK562EFTUD2
RIDDX41ENSG00000183258.7chr5-1769429291769431941769429291769429901769431191769431940.133000.000000.00000includedK562AQR
RIDDX41ENSG00000183258.7chr5-1769403531769408481769403531769404851769406851769408480.284000.000000.00000includedK562AQR
RIDDX41ENSG00000183258.7chr5-1769432881769438361769432881769434481769437251769438360.121000.000000.00000includedK562AQR
RIDDX41ENSG00000183258.7chr5-1769394961769398771769394961769396461769397801769398770.174000.000000.00000includedK562AQR
MXEDDX41ENSG00000183258.7chr5-1769421861769422591769426851769428221769419161769420701769429291769429900.091000.000070.025471includedK562SDAD1
MXEDDX41ENSG00000183258.7chr5-176941916176942070176942186176942259176941701176941838176942685176942732-0.153000.000030.001452includedK562PRPF8
MXEDDX41ENSG00000183258.7chr5-176941916176942070176942929176942990176941701176941838176943119176943194-0.106000.003640.060342includedK562PRPF8

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for DDX41 is not avaliable on ENCORE database.