CTC1

General Information

Gene Name       : CTC1
Gene ID             : ENSG00000178971.14
Essential Gene : Yes

Functions

Localization

Domains (AlphaFold: CTC1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878CTC1ENSG00000178971.1416.6817.3817.03ENCSR000AEF
HepG2CTC1ENSG00000178971.149.9613.6311.80ENCSR985KAT
K562CTC1ENSG00000178971.1414.2813.9814.13ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for CTC1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • CTC1 RNA is bound by 9 proteins.  







eCLIP assay for CTC1 is not avaliable on ENCORE database.





9 proteins are bound to CTC1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr1781321588132229-3'-UTR,CDS,intron-Distal,intron-Proximal4.914849.66177HepG2U2AF2
chr1781320498132106-3'-UTR,CDS,intron-Distal,intron-Proximal3.673683.32039HepG2PPIG
chr1781327268132773-3'-UTR,CDS,intron-Distal,intron-Proximal5.020056.50173HepG2U2AF2
chr1781335608133638-3'-UTR,CDS,intron-Distal,intron-Proximal4.570289.97647HepG2PRPF8
chr1781331938133303-3'-UTR,CDS,intron-Distal,intron-Proximal3.267667.36622HepG2U2AF2
chr1781321828132229-3'-UTR,CDS,intron-Distal,intron-Proximal3.853343.43234HepG2U2AF1
chr1781338878133914-5'-UTR,CDS,intron-Distal3.512874.09885HepG2BCLAF1
chr1781353188135369-CDS,intron-Distal4.306955.11295K562U2AF2
chr1781357448135806-CDS,intron-Distal,intron-Proximal3.812533.62357HepG2U2AF2
chr1781385418138615-CDS,intron-Distal,intron-Proximal3.349405.02467K562U2AF2
chr1781356948135758-CDS,intron-Distal4.229594.50960HepG2GRWD1
chr1781383998138482-CDS,intron-Distal3.607364.49887K562ZNF622
chr1781353628135369-CDS,intron-Distal3.647603.85647HepG2U2AF1
chr1781353698135408-CDS,intron-Distal4.103815.34167HepG2SF3B4
chr1781353218135371-CDS,intron-Distal5.140039.32426HepG2U2AF2
chr1781385658138614-CDS,intron-Distal,intron-Proximal3.774135.86177HepG2U2AF2
chr1781378558137940-CDS,intron-Distal,intron-Proximal3.324264.51003HepG2PPIG
chr1781377728137806-CDS,intron-Distal,intron-Proximal3.313733.59112HepG2PPIG
chr1781385638138613-CDS,intron-Distal,intron-Proximal3.164683.39477K562BUD13
chr1781353228135362-CDS,intron-Distal3.780894.29996HepG2U2AF1
chr1781385578138612-CDS,intron-Distal,intron-Proximal3.737673.23561HepG2U2AF1
chr1781346998134743-CDS,intron-Distal3.267183.59112HepG2PPIG
chr1781386508138715-intron-Distal,intron-Proximal4.091263.82050HepG2SF3B4
chr1781358518135897-intron-Distal,intron-Proximal3.481259.55021HepG2SF3B4
chr1781358458135911-intron-Distal,intron-Proximal4.972876.02529K562SF3B4
chr1781334548133535-intron-Distal,intron-Proximal3.977614.50744HepG2U2AF2
chr1781358138135851-intron-Distal,intron-Proximal4.775886.66303HepG2SF3B4
chr1781322398132291-intron-Distal,intron-Proximal5.4523511.67810HepG2SF3B4
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for CTC1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for CTC1 is not available on ENCORE database.

  • 91 RBPs can affect the levels of CTC1.  








The Knockdown/knockout RNA-Seq assay for CTC1 is not available on ENCORE database.





91 RBPs can affect the gene expression of CTC1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
CTC1ENSG00000178971.9868.11190587.418200.563408.193207.26050HepG2ACO1
CTC1ENSG00000178971.9395.91950550.22730-0.474802.390801.89250HepG2AKAP1
CTC1ENSG00000178971.9846.03310590.126800.519606.511605.38370HepG2AKAP8L
CTC1ENSG00000178971.9650.96360455.257700.515803.435702.56110HepG2ASCC1
CTC1ENSG00000178971.91134.49060735.397400.6253010.811809.60240HepG2AUH
CTC1ENSG00000178971.9538.45440384.276700.486603.211702.57290HepG2BOP1
CTC1ENSG00000178971.9557.90960413.903400.430603.055102.24730HepG2CALR
CTC1ENSG00000178971.9286.22980432.52920-0.595603.599202.72590HepG2CIRBP
CTC1ENSG00000178971.9754.29130587.228900.361103.670002.92290HepG2CKAP4
CTC1ENSG00000178971.9579.43120352.789500.715705.932404.96000HepG2CPSF6
CTC1ENSG00000178971.9805.80700565.603300.510505.854704.98550HepG2CELF1
CTC1ENSG00000178971.9497.39320355.872800.482902.228901.52830HepG2DDX55
CTC1ENSG00000178971.9580.12430400.617500.534002.251101.37250HepG2DDX59
CTC1ENSG00000178971.9617.12860413.261000.578404.867903.58550HepG2DHX30
CTC1ENSG00000178971.9743.42720428.469500.7949011.5774010.22060HepG2DNAJC21
CTC1ENSG00000178971.9919.28960435.240401.0786013.6137012.36650HepG2EIF2S1
CTC1ENSG00000178971.9736.26350480.969500.614204.434903.62920HepG2EIF4A3
CTC1ENSG00000178971.9894.39490468.333900.933307.793206.66850HepG2EIF4B
CTC1ENSG00000178971.9772.45020599.988100.364403.467402.54620HepG2EIF4G1
CTC1ENSG00000178971.91523.40350844.340200.8513020.7561019.37050HepG2ETF1
CTC1ENSG00000178971.9695.37560444.901100.644206.334104.72920HepG2FASTKD2
CTC1ENSG00000178971.9674.16770353.388900.931803.971102.75170HepG2FTO
CTC1ENSG00000178971.9754.14880323.089201.2228018.5297016.58240HepG2FUBP3
CTC1ENSG00000178971.91168.47890450.193701.3759022.1299020.32670HepG2G3BP1
CTC1ENSG00000178971.9711.68210477.984700.574204.318303.19530HepG2G3BP2
CTC1ENSG00000178971.9666.03440399.921200.735805.845204.93860HepG2GPKOW
CTC1ENSG00000178971.9689.76270560.778800.298602.432701.50970HepG2HDGF
CTC1ENSG00000178971.9626.37790481.162700.380402.239101.60840HepG2HNRNPC
CTC1ENSG00000178971.9823.25110621.992100.404303.707002.88690HepG2HNRNPF
CTC1ENSG00000178971.9768.73740455.944700.753507.376206.27670HepG2HNRNPK
CTC1ENSG00000178971.9923.48920381.651601.2747019.2358017.80010HepG2HNRNPLL
CTC1ENSG00000178971.9624.91910477.981300.386603.296702.63900HepG2HNRNPU
CTC1ENSG00000178971.91373.206801012.169900.440002.782701.54910HepG2HSPD1
CTC1ENSG00000178971.9788.71590612.476100.364802.179501.53270HepG2IGF2BP1
CTC1ENSG00000178971.9949.86630457.599401.0535013.5622012.19450HepG2IGF2BP2
CTC1ENSG00000178971.9906.80760429.488101.078105.301103.96400HepG2IGF2BP3
CTC1ENSG00000178971.9682.40800488.241400.482905.698504.67860HepG2ILF2
CTC1ENSG00000178971.9834.65740460.290400.858507.163505.46590HepG2KHSRP
CTC1ENSG00000178971.9658.14560536.935500.293602.453801.49250HepG2KIF1C
CTC1ENSG00000178971.9705.53270488.221700.531103.310202.62600HepG2MATR3
CTC1ENSG00000178971.9591.79840396.199600.578802.283901.32650HepG2METAP2
CTC1ENSG00000178971.9659.39030499.713100.399902.122901.56500HepG2NCBP2
CTC1ENSG00000178971.9425.88930712.08920-0.741604.115903.01760HepG2PABPC1
CTC1ENSG00000178971.9983.28520444.986101.1437015.6880014.02090HepG2PABPC4
CTC1ENSG00000178971.9591.55070455.548800.376802.533801.94630HepG2PCBP1
CTC1ENSG00000178971.9676.32480537.701100.330802.652001.89280HepG2PRPF4
CTC1ENSG00000178971.9464.43070274.493500.758605.134604.06920HepG2PRPF8
CTC1ENSG00000178971.9659.18260463.574400.507805.238304.53500HepG2PTBP1
CTC1ENSG00000178971.9361.24380575.65890-0.672204.320003.59480HepG2PUF60
CTC1ENSG00000178971.9850.33750611.091300.476506.502405.67290HepG2PUM1
CTC1ENSG00000178971.9987.45580610.642400.693309.416808.21720HepG2PUM2
CTC1ENSG00000178971.91063.97780501.984901.0837021.8363020.32400HepG2QKI
CTC1ENSG00000178971.91181.06080705.711000.7428013.0023012.04530HepG2RBM22
CTC1ENSG00000178971.9967.26120455.612901.0860018.9129017.25140HepG2RBM25
CTC1ENSG00000178971.9311.53450440.63300-0.500202.361501.38470HepG2RCC2
CTC1ENSG00000178971.9655.84830515.883500.346202.678702.14460HepG2NELFE
CTC1ENSG00000178971.9687.95800480.530200.517605.555704.71990HepG2RECQL
CTC1ENSG00000178971.9884.59870670.165600.400402.535501.87720HepG2RPLP0
CTC1ENSG00000178971.9462.69070271.527600.768804.881503.87040HepG2RRP9
CTC1ENSG00000178971.9502.85530377.763700.412602.388401.73110HepG2SF3B1
CTC1ENSG00000178971.9617.87910482.575500.356502.847202.24810HepG2SF3B4
CTC1ENSG00000178971.9748.07050551.975300.438504.994704.09540HepG2SLBP
CTC1ENSG00000178971.9649.74580477.593200.444002.247201.39300HepG2SMNDC1
CTC1ENSG00000178971.9775.19310420.326900.882906.295705.10700HepG2SNRNP70
CTC1ENSG00000178971.9980.76420568.384000.7869014.6990013.41780HepG2SRSF5
CTC1ENSG00000178971.9939.99660611.116200.621108.782307.66030HepG2SRSF7
CTC1ENSG00000178971.9658.51920409.834900.684109.047908.15260HepG2SRSF9
CTC1ENSG00000178971.9789.32400646.405200.288102.542601.94200HepG2SUCLG1
CTC1ENSG00000178971.9648.55060354.256100.872306.823305.83620HepG2SUPV3L1
CTC1ENSG00000178971.9699.39720452.847000.627005.061804.34080HepG2TAF15
CTC1ENSG00000178971.9705.53380371.973800.9234010.477109.19970HepG2TARDBP
CTC1ENSG00000178971.9767.25620416.026200.8829012.7716011.00570HepG2TIA1
CTC1ENSG00000178971.9738.31860562.400800.392502.900702.00380HepG2TUFM
CTC1ENSG00000178971.9403.69960601.86470-0.576204.029203.27700HepG2U2AF1
CTC1ENSG00000178971.9401.21060209.263300.938907.641606.37810HepG2UCHL5
CTC1ENSG00000178971.9398.75880624.36480-0.646906.712205.84780HepG2UTP3
CTC1ENSG00000178971.9728.48440530.643800.457103.951803.17310HepG2ZC3H8
CTC1ENSG00000178971.9970.06360711.246500.447606.468905.72400HepG2ZNF622
CTC1ENSG00000178971.9324.14980601.66100-0.892308.467007.53150K562AQR
CTC1ENSG00000178971.9838.74500551.128000.605703.116601.97970K562CNOT7
CTC1ENSG00000178971.9476.23860311.128800.614104.827803.79620K562CPSF6
CTC1ENSG00000178971.9253.78740361.76410-0.511403.764002.19510K562DDX27
CTC1ENSG00000178971.9263.15840385.49030-0.550802.691101.67050K562EIF3D
CTC1ENSG00000178971.9612.93250791.57300-0.369002.884301.92680K562EIF4G2
CTC1ENSG00000178971.9486.95410661.57690-0.442103.094602.29820K562GRSF1
CTC1ENSG00000178971.9760.72040560.502800.440503.587502.36320K562HNRNPL
CTC1ENSG00000178971.9286.17560418.68090-0.549003.123402.24290K562KIF1C
CTC1ENSG00000178971.9275.29240400.76230-0.541803.225802.03930K562MAK16
CTC1ENSG00000178971.9694.98470582.241000.255301.954601.31420K562NSUN2
CTC1ENSG00000178971.9201.77840350.40150-0.796205.064904.05130K562PRPF8
CTC1ENSG00000178971.9401.60370279.844000.521003.581702.83720K562PTBP1
CTC1ENSG00000178971.9651.25980863.68770-0.407302.534101.75360K562PUF60
CTC1ENSG00000178971.9436.62380320.473600.446102.636601.67030K562RCC2
CTC1ENSG00000178971.9232.17040356.88900-0.620303.417302.50710K562RPS19
CTC1ENSG00000178971.9561.79100318.590000.818203.397501.89810K562SFPQ
CTC1ENSG00000178971.9365.29570277.635000.395801.895901.30220K562TARDBP
CTC1ENSG00000178971.9766.04310617.362800.311202.633001.93250K562UPF1
CTC1ENSG00000178971.9449.63760549.32980-0.288902.039901.30540K562WDR43
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for CTC1 is not available on ENCORE database.





15 RBPs can affect the splicing of CTC1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
A3SSCTC1ENSG00000178971.9chr17-8133880813399081338808133969813459381347630.180000.003590.02159longerK562AQR
RICTC1ENSG00000178971.9chr17-8133208813378681332088133286813361181337860.293000.000000.00002includedHepG2U2AF2
RICTC1ENSG00000178971.9chr17-813245981327648132459813252481326198132764-0.523000.001120.02613excludedK562SRSF1
RICTC1ENSG00000178971.9chr17-8133208813378681332088133286813361181337860.250000.003260.05695includedHepG2IGF2BP3
RICTC1ENSG00000178971.9chr17-813245981327648132459813252481326198132764-0.273000.001750.03918excludedHepG2SRSF1
RICTC1ENSG00000178971.9chr17-8133208813378681332088133286813361181337860.200000.000180.01360includedK562BUD13
RICTC1ENSG00000178971.9chr17-8133208813378681332088133286813361181337860.263000.001480.02712includedHepG2G3BP1
RICTC1ENSG00000178971.9chr17-8133208813378681332088133286813361181337860.263000.003200.05591includedHepG2KHSRP
RICTC1ENSG00000178971.9chr17-813320881337868133208813328681336118133786-0.257000.002760.08851excludedHepG2HNRNPC
RICTC1ENSG00000178971.9chr17-8133208813378681332088133286813361181337860.288000.012840.07582includedHepG2SF3B4
RICTC1ENSG00000178971.9chr17-8133208813378681332088133286813361181337860.289000.000060.00210includedHepG2FUBP3
RICTC1ENSG00000178971.9chr17-8133208813378681332088133286813361181337860.440000.000100.00195includedHepG2HNRNPK
RICTC1ENSG00000178971.9chr17-8133764813396181337648133786813388081339610.069000.014550.07479includedK562AQR
RICTC1ENSG00000178971.9chr17-813245981327648132459813252481326198132764-0.420000.002340.06718excludedK562TARDBP
RICTC1ENSG00000178971.9chr17-813245981327648132459813252481326198132764-0.557000.000130.00426excludedK562PTBP1
RICTC1ENSG00000178971.9chr17-813320881337868133208813328681336118133786-0.491000.000880.01685excludedK562FXR1
MXECTC1ENSG00000178971.9chr17-813245981326198132619813276481320448132210813320881332860.264000.001880.058021includedHepG2SUPV3L1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for CTC1 is not avaliable on ENCORE database.