CHCHD5

General Information

Gene Name       : CHCHD5
Gene ID             : ENSG00000125611.15
Essential Gene : No

Functions

Localization

Domains (AlphaFold: CHCHD5)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878CHCHD5ENSG00000125611.151.7211.146.43ENCSR000AEF
HepG2CHCHD5ENSG00000125611.1549.677.9528.81ENCSR985KAT
K562CHCHD5ENSG00000125611.1533.1114.1323.62ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for CHCHD5 is not avaliable on ENCORE database.



Proteins bound to RNA
  • CHCHD5 RNA is bound by 4 proteins.  







eCLIP assay for CHCHD5 is not avaliable on ENCORE database.





4 proteins are bound to CHCHD5 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr2113346476113346556+3'-UTR5.025695.48383HepG2LARP4
chr2113342176113342227+5'-UTR,CDS,intron-Distal,intron-Proximal4.446175.88953K562DDX3X
chr2113343731113343847+5'-UTR,CDS,intron-Proximal3.133046.09708HepG2BUD13
chr2113343585113343658+CDS4.352678.04211K562DDX3X
chr2113343548113343585+CDS,intron-Proximal5.715667.56430K562DDX3X
chr2113343616113343693+CDS,intron-Proximal3.6843811.14095K562YBX3
chr2113343583113343660+CDS5.508955.29846HepG2DDX3X
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for CHCHD5 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for CHCHD5 is not available on ENCORE database.

  • 82 RBPs can affect the levels of CHCHD5.  








The Knockdown/knockout RNA-Seq assay for CHCHD5 is not available on ENCORE database.





82 RBPs can affect the gene expression of CHCHD5 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
CHCHD5ENSG00000125611.11445.31600258.844500.782602.786102.25250HepG2AKAP1
CHCHD5ENSG00000125611.11231.89340316.76640-0.450002.338001.69760HepG2AUH
CHCHD5ENSG00000125611.11249.67860111.705001.160303.950802.82990HepG2BCCIP
CHCHD5ENSG00000125611.11215.6326093.683901.202605.708804.60980HepG2CNOT7
CHCHD5ENSG00000125611.11191.66380132.490500.532602.461001.84760HepG2CELF1
CHCHD5ENSG00000125611.11241.01460165.651900.540903.261502.36340HepG2DDX19B
CHCHD5ENSG00000125611.11242.79160109.851901.144103.612702.74400HepG2DDX55
CHCHD5ENSG00000125611.11103.13900213.17570-1.047502.811101.82580HepG2DDX59
CHCHD5ENSG00000125611.11326.90950213.106300.617201.969901.44110HepG2DDX6
CHCHD5ENSG00000125611.11187.0871072.792001.361803.372602.60170HepG2DNAJC21
CHCHD5ENSG00000125611.11165.5123072.178801.197207.878906.84890HepG2DNAJC2
CHCHD5ENSG00000125611.11188.86420129.733000.541702.529201.88240HepG2HNRNPL
CHCHD5ENSG00000125611.11187.1690081.212301.204507.394406.44080HepG2HNRNPU
CHCHD5ENSG00000125611.11125.2124082.954000.593902.119001.46770HepG2ILF2
CHCHD5ENSG00000125611.11166.0638096.843200.777902.750001.61850HepG2LARP7
CHCHD5ENSG00000125611.11229.49580141.234200.700304.172203.23550HepG2NOL12
CHCHD5ENSG00000125611.11192.5284098.408700.968104.000901.59420HepG2NUSAP1
CHCHD5ENSG00000125611.11137.1476080.374000.770802.268701.49490HepG2PARN
CHCHD5ENSG00000125611.11159.41060231.38700-0.537602.596802.00380HepG2PCBP1
CHCHD5ENSG00000125611.11178.54380106.482500.745603.304801.95570HepG2PKM
CHCHD5ENSG00000125611.11147.1470072.433201.022405.276204.28790HepG2PPIL4
CHCHD5ENSG00000125611.11318.68570134.828901.2409011.6073010.50060HepG2PUF60
CHCHD5ENSG00000125611.11306.51290143.136701.0985011.9860010.93440HepG2PUM1
CHCHD5ENSG00000125611.11260.68410143.026000.865905.898804.93300HepG2PUM2
CHCHD5ENSG00000125611.11157.36470231.41930-0.556402.026601.44380HepG2RBM25
CHCHD5ENSG00000125611.11209.93700116.786700.846003.327802.23360HepG2RBM27
CHCHD5ENSG00000125611.11189.9251094.836901.001803.746602.51110HepG2RCC2
CHCHD5ENSG00000125611.11192.36880125.312900.618202.399601.82260HepG2RPS19
CHCHD5ENSG00000125611.11209.82620107.691800.962204.243203.25940HepG2RPS2
CHCHD5ENSG00000125611.11206.79770109.947700.911303.820102.54400HepG2RPS5
CHCHD5ENSG00000125611.11182.5964072.317401.336109.539608.45520HepG2SAFB2
CHCHD5ENSG00000125611.11191.81770129.300200.568902.819902.11160HepG2SLBP
CHCHD5ENSG00000125611.11176.2045084.324501.063106.526905.60520HepG2SMN1
CHCHD5ENSG00000125611.11194.35350343.33570-0.820907.377706.66740HepG2SRFBP1
CHCHD5ENSG00000125611.11191.38280255.86010-0.418901.756301.35540HepG2SRSF1
CHCHD5ENSG00000125611.11223.83280133.135700.749404.690203.91160HepG2SRSF5
CHCHD5ENSG00000125611.11131.62030208.16840-0.661403.453502.85130HepG2SRSF9
CHCHD5ENSG00000125611.11357.59270151.401901.2398015.1105013.84730HepG2SUCLG1
CHCHD5ENSG00000125611.1194.08430230.01750-1.289706.039605.26450HepG2TAF15
CHCHD5ENSG00000125611.11134.97450197.97480-0.552602.077601.43710HepG2TARDBP
CHCHD5ENSG00000125611.11164.0973078.876101.056805.627104.96350HepG2TIAL1
CHCHD5ENSG00000125611.11158.9799079.620700.997505.650404.89730HepG2TRIM56
CHCHD5ENSG00000125611.11200.02630131.738300.602402.691101.83040HepG2TUFM
CHCHD5ENSG00000125611.11234.58090139.453500.750203.168502.27290HepG2UBE2L3
CHCHD5ENSG00000125611.11260.20570193.038400.430702.027701.49850HepG2UTP3
CHCHD5ENSG00000125611.11138.8819084.351100.719302.417401.40260HepG2XPO5
CHCHD5ENSG00000125611.11280.71660107.615101.383107.707206.50900HepG2XRN2
CHCHD5ENSG00000125611.11532.39810362.730800.553505.295204.55120K562AGGF1
CHCHD5ENSG00000125611.11122.75720262.86340-1.098506.526305.68720K562AQR
CHCHD5ENSG00000125611.11312.96190208.008700.589203.204702.05150K562CCAR1
CHCHD5ENSG00000125611.11270.71300418.85350-0.629703.207002.15940K562CELF1
CHCHD5ENSG00000125611.11202.24750141.752600.512602.247101.31590K562DDX3X
CHCHD5ENSG00000125611.11210.64500295.99060-0.490702.885802.22090K562DDX47
CHCHD5ENSG00000125611.11153.3709077.936200.976603.485102.03530K562EEF2
CHCHD5ENSG00000125611.11285.29290170.867300.739505.109804.17510K562EIF2S2
CHCHD5ENSG00000125611.11198.46220133.384000.573202.798401.63450K562EIF4B
CHCHD5ENSG00000125611.11199.14420129.285300.623202.962201.61500K562EWSR1
CHCHD5ENSG00000125611.11245.25670160.605700.610703.045202.15370K562FIP1L1
CHCHD5ENSG00000125611.1188.08600147.64870-0.745202.617101.78610K562FMR1
CHCHD5ENSG00000125611.117.6964035.96650-2.224403.947503.06690K562G3BP2
CHCHD5ENSG00000125611.11217.50430132.114800.719203.219902.21110K562HNRNPM
CHCHD5ENSG00000125611.11392.59580217.727300.850406.374805.18050K562HSPD1
CHCHD5ENSG00000125611.11165.0968098.746300.741402.834801.62560K562IGF2BP3
CHCHD5ENSG00000125611.11122.00340225.42730-0.885703.447801.83840K562ILF2
CHCHD5ENSG00000125611.11165.17650101.944000.696102.698301.86910K562MAGOH
CHCHD5ENSG00000125611.11242.01880362.91250-0.584503.237802.01310K562MSI2
CHCHD5ENSG00000125611.11183.37610254.40530-0.472302.308901.56860K562MTPAP
CHCHD5ENSG00000125611.11179.6890074.273301.274506.495804.35750K562NONO
CHCHD5ENSG00000125611.11214.89100282.65470-0.395401.974701.33130K562NSUN2
CHCHD5ENSG00000125611.11146.57970281.13010-0.939603.615802.66410K562PCBP3
CHCHD5ENSG00000125611.11111.57000215.62920-0.950605.980504.80580K562POLR2G
CHCHD5ENSG00000125611.11297.64750182.339800.706902.851902.01790K562PPIG
CHCHD5ENSG00000125611.11292.74090161.067900.861902.912601.98000K562PSIP1
CHCHD5ENSG00000125611.11277.13650371.49030-0.422702.321301.57350K562PUF60
CHCHD5ENSG00000125611.11271.90410395.30580-0.539902.635801.59680K562PUM1
CHCHD5ENSG00000125611.11475.00800364.712800.381102.539201.96750K562RBM15
CHCHD5ENSG00000125611.11273.18250147.060400.893402.962301.93470K562RCC2
CHCHD5ENSG00000125611.11313.16270192.153400.704603.232102.06020K562SAFB
CHCHD5ENSG00000125611.1176.16100131.76320-0.790802.270701.39960K562SF3B1
CHCHD5ENSG00000125611.1166.7705037.433000.834802.086401.34580K562SF3B4
CHCHD5ENSG00000125611.11322.23810139.398301.208809.956807.67630K562SRFBP1
CHCHD5ENSG00000125611.11155.3663073.189001.085904.758202.56270K562SRP68
CHCHD5ENSG00000125611.11170.3422097.916600.798703.080501.95570K562SRSF4
CHCHD5ENSG00000125611.11176.8360091.768000.946204.866903.40340K562SRSF5
CHCHD5ENSG00000125611.11131.9886070.872800.897002.380701.44240K562SUPV3L1
CHCHD5ENSG00000125611.11161.2906098.260600.714902.900402.17610K562TARDBP
CHCHD5ENSG00000125611.11181.3093094.792800.935504.712103.60020K562TIA1
CHCHD5ENSG00000125611.11204.8675093.104701.137706.766204.87370K562TRA2A
CHCHD5ENSG00000125611.11314.99120164.688300.935503.978402.80020K562TRIM56
CHCHD5ENSG00000125611.11201.28610266.68630-0.405902.063101.32510K562WDR43
CHCHD5ENSG00000125611.11154.1543076.450601.011704.196602.59150K562XRN2
CHCHD5ENSG00000125611.11202.99310296.09870-0.544602.910702.02210K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for CHCHD5 is not available on ENCORE database.





4 RBPs can affect the splicing of CHCHD5 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
A5SSCHCHD5ENSG00000125611.11chr2+1133435501133437011133435501133436911133437761133468520.063000.000150.03714longerHepG2PTBP1
RICHCHD5ENSG00000125611.11chr2+113343550113343942113343550113343691113343776113343942-0.058000.000020.00680excludedK562TIA1
RICHCHD5ENSG00000125611.11chr2+1133435501133439421133435501133436911133437761133439420.065000.000320.00492includedHepG2RBM22
RICHCHD5ENSG00000125611.11chr2+1133435501133439421133435501133436911133437761133439420.061000.001520.00980includedK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for CHCHD5 is not avaliable on ENCORE database.