CEBPA

General Information

Gene Name       : CEBPA
Gene ID             : ENSG00000245848.2
Essential Gene : Yes

Functions

Localization

Domains (AlphaFold: CEBPA)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878CEBPAENSG00000245848.20.000.030.01ENCSR000AEF
HepG2CEBPAENSG00000245848.245.6926.4436.06ENCSR985KAT
K562CEBPAENSG00000245848.20.150.100.12ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for CEBPA is not avaliable on ENCORE database.



Proteins bound to RNA
  • CEBPA RNA is bound by 5 proteins.  







eCLIP assay for CEBPA is not avaliable on ENCORE database.





5 proteins are bound to CEBPA RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr193379217433792186-3'-UTR,intron-Distal5.502578.17960HepG2RBM15
chr193379136533791428-3'-UTR,intron-Distal4.452557.72256HepG2AKAP1
chr193379219933792257-3'-UTR,CDS,intron-Distal3.651185.29197HepG2UPF1
chr193379144633791489-3'-UTR,intron-Distal4.220175.40760HepG2UPF1
chr193379126433791285-3'-UTR,intron-Distal3.371033.44343HepG2AKAP1
chr193379212533792199-3'-UTR,intron-Distal5.5400117.10746HepG2UPF1
chr193379191033791955-3'-UTR,intron-Distal4.046716.13173HepG2DDX55
chr193379191933791976-3'-UTR,intron-Distal3.128615.38701HepG2AKAP1
chr193379182533791888-3'-UTR,intron-Distal4.212938.66689HepG2AKAP1
chr193379219333792286-3'-UTR,CDS,intron-Distal3.933118.08165HepG2RBM15
chr193379208033792111-3'-UTR,intron-Distal4.707264.88132HepG2RBM15
chr193379207033792125-3'-UTR,intron-Distal5.8147910.75082HepG2UPF1
chr193379099233791085-3'-UTR,intron-Distal6.1399414.10191HepG2UPF1
chr193379164133791674-3'-UTR,intron-Distal3.532003.44343HepG2AKAP1
chr193379184033791881-3'-UTR,intron-Distal3.935516.13173HepG2DDX55
chr193379111633791203-3'-UTR,intron-Distal3.9875724.98443HepG2DDX55
chr193379114433791199-3'-UTR,intron-Distal3.835739.95056HepG2AKAP1
chr193379176833791886-3'-UTR,intron-Distal6.8448128.09814HepG2UPF1
chr193379201433792051-3'-UTR,intron-Distal3.306235.60807HepG2RBM15
chr193379152833791599-3'-UTR,intron-Distal5.0822013.32127HepG2UPF1
chr193379114133791190-3'-UTR,intron-Distal5.595208.73200HepG2UPF1
chr193379100533791098-3'-UTR,intron-Distal3.413595.82388HepG2DDX55
chr193379214533792174-3'-UTR,intron-Distal4.280719.78433HepG2RBM15
chr193379326233793323-5'-UTR,CDS,intron-Distal4.1657820.14506HepG2DDX3X
chr193379335033793436-5'-UTR,intron-Distal,intron-Proximal5.0707943.29346HepG2DDX3X
chr193379317733793225-CDS,intron-Distal3.7896915.61647HepG2DDX3X
chr193379272233792784-CDS,intron-Distal3.040603.77557HepG2UPF1
chr193379296633793004-CDS,intron-Distal4.233316.81818HepG2RBM15
chr193379231833792354-CDS,intron-Distal3.806234.22136HepG2RBM15
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for CEBPA is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for CEBPA is not available on ENCORE database.

  • 53 RBPs can affect the levels of CEBPA.  








The Knockdown/knockout RNA-Seq assay for CEBPA is not available on ENCORE database.





53 RBPs can affect the gene expression of CEBPA :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
CEBPAENSG00000245848.2637.5133097.680702.706204.205703.06240HepG2ABCF1
CEBPAENSG00000245848.27.3832082.66080-3.4849010.788706.42280HepG2AGGF1
CEBPAENSG00000245848.2162.7910041.674701.965705.143504.35880HepG2BOP1
CEBPAENSG00000245848.20.0000013.68470-99999.999994.189102.39130HepG2CSTF2T
CEBPAENSG00000245848.2204.63340129.868700.655903.733502.78320HepG2DDX19B
CEBPAENSG00000245848.244.1544014.714601.585203.045602.33600HepG2DDX21
CEBPAENSG00000245848.2435.65480134.330801.6973022.5518021.06950HepG2DKC1
CEBPAENSG00000245848.213.807901.840802.907002.412901.75080HepG2DNAJC21
CEBPAENSG00000245848.211.111701.820302.609701.917801.35650HepG2DNAJC2
CEBPAENSG00000245848.252.644500.0000099999.9999011.114409.42700HepG2EEF2
CEBPAENSG00000245848.210.189100.0000099999.999902.545901.67460HepG2EIF3D
CEBPAENSG00000245848.231.493007.676602.036402.916602.08150HepG2EIF4G2
CEBPAENSG00000245848.224.700300.0000099999.999907.457005.52230HepG2FAM120A
CEBPAENSG00000245848.2151.3080043.327401.804003.333302.63490HepG2GPKOW
CEBPAENSG00000245848.218.382402.065703.153502.441501.78720HepG2HNRNPC
CEBPAENSG00000245848.2166.6292041.350902.010603.635902.92360HepG2HNRNPLL
CEBPAENSG00000245848.2140.5552067.963701.048203.536802.47130HepG2HNRNPM
CEBPAENSG00000245848.215.055802.191902.780002.420001.32190HepG2KHDRBS1
CEBPAENSG00000245848.2867.7234077.940003.4767012.0145010.29160HepG2LARP4
CEBPAENSG00000245848.2472.8638066.982202.8195037.3479035.19210HepG2MAGOH
CEBPAENSG00000245848.2405.2865067.328102.5896015.6583014.24830HepG2MATR3
CEBPAENSG00000245848.215.3613066.94590-2.123702.646001.45810HepG2NAA15
CEBPAENSG00000245848.2170.5436068.890501.307702.215401.64660HepG2NCBP2
CEBPAENSG00000245848.232.084106.240902.361903.290901.75050HepG2NIP7
CEBPAENSG00000245848.2241.35830153.897300.649103.271601.53430HepG2NUP35
CEBPAENSG00000245848.224.855500.0000099999.999906.221904.41970HepG2PKM
CEBPAENSG00000245848.218.127601.830603.307703.670002.83340HepG2PPIL4
CEBPAENSG00000245848.259.671307.692702.955408.583607.60970HepG2PUF60
CEBPAENSG00000245848.216.0631061.63310-1.940005.518404.68100HepG2QKI
CEBPAENSG00000245848.248.70360142.07050-1.544507.242206.49550HepG2RBM22
CEBPAENSG00000245848.253.953408.334002.694505.154703.78270HepG2RBM27
CEBPAENSG00000245848.2158.6747063.320401.325205.099604.40210HepG2NELFE
CEBPAENSG00000245848.236.597800.0000099999.999907.867006.89350HepG2RPS19
CEBPAENSG00000245848.276.267702.311605.0440016.6891014.80120HepG2RPS3A
CEBPAENSG00000245848.222.577102.177203.374204.075602.50150HepG2SART3
CEBPAENSG00000245848.221.003902.321103.177702.617401.31250HepG2SF1
CEBPAENSG00000245848.2788.80290191.018002.0459016.6202014.89470HepG2SF3A3
CEBPAENSG00000245848.2131.3565040.911701.682802.528901.85230HepG2SF3B1
CEBPAENSG00000245848.228.430907.368501.947902.696802.00220HepG2SLBP
CEBPAENSG00000245848.224.944002.088503.578102.616701.35570HepG2SNRNP200
CEBPAENSG00000245848.258.48700160.45260-1.456002.790502.28720HepG2SRFBP1
CEBPAENSG00000245848.221.6915061.83340-1.511303.769703.23950HepG2SRSF1
CEBPAENSG00000245848.256.904507.591002.906104.726103.94520HepG2SRSF5
CEBPAENSG00000245848.264.4568016.065902.004202.450101.79220HepG2SRSF7
CEBPAENSG00000245848.29.5644050.29870-2.394806.591905.80520HepG2SRSF9
CEBPAENSG00000245848.2265.16040139.292100.928707.037506.29190HepG2SSB
CEBPAENSG00000245848.226.525008.636901.618701.835701.30990HepG2SUCLG1
CEBPAENSG00000245848.26.7381055.55880-3.043607.160506.33140HepG2TAF15
CEBPAENSG00000245848.2197.5806040.384702.290504.176203.30820HepG2TARDBP
CEBPAENSG00000245848.224.344502.011503.597105.126604.40710HepG2TRIM56
CEBPAENSG00000245848.229.689502.410603.622403.666802.52680HepG2U2AF2
CEBPAENSG00000245848.222.624504.904902.205502.123001.45870HepG2UCHL5
CEBPAENSG00000245848.255.687708.186202.766004.041903.17350HepG2XRN2
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for CEBPA is not available on ENCORE database.






No RBPs affect the alternative splcing events of CEBPA on ENCORE database.





The Knockdown/knockout RNA-Seq assay for CEBPA is not avaliable on ENCORE database.