CDHR3

General Information

Gene Name       : CDHR3
Gene ID             : ENSG00000128536.15
Essential Gene : No

Functions

Localization

Domains (AlphaFold: CDHR3)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878CDHR3ENSG00000128536.150.000.000.00ENCSR000AEF
HepG2CDHR3ENSG00000128536.155.754.405.08ENCSR985KAT
K562CDHR3ENSG00000128536.150.070.120.10ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for CDHR3 is not avaliable on ENCORE database.



Proteins bound to RNA
  • CDHR3 RNA is bound by 22 proteins.  







eCLIP assay for CDHR3 is not avaliable on ENCORE database.





22 proteins are bound to CDHR3 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr7105645106105645168+3'-UTR,CDS,intron-Proximal4.780034.68690HepG2PRPF8
chr7105644869105644976+3'-UTR,CDS,intron-Proximal4.122363.12827HepG2U2AF2
chr7105517670105517767+5'-UTR,intron-Proximal3.027027.48745HepG2PRPF8
chr7105517613105517697+5'-UTR3.487384.66813HepG2RBM15
chr7105567094105567150+intron-Distal3.427414.57452HepG2SUGP2
chr7105585405105585467+intron-Distal3.841315.26073HepG2HLTF
chr7105555265105555354+intron-Distal3.674444.87826HepG2MATR3
chr7105571780105571902+intron-Distal5.5687735.19603HepG2PTBP1
chr7105551555105551728+intron-Distal,intron-Proximal3.250385.33987HepG2GRWD1
chr7105622963105623064+intron-Distal4.456977.70131HepG2PCBP2
chr7105563500105563603+intron-Distal4.778657.94475HepG2CSTF2
chr7105559589105559680+intron-Distal3.769515.13840HepG2MATR3
chr7105552320105552397+intron-Distal4.280995.75916HepG2CSTF2
chr7105535037105535076+intron-Distal3.136053.07152HepG2HLTF
chr7105566937105566987+intron-Distal4.499735.11328HepG2SUGP2
chr7105546594105546649+intron-Distal3.431676.25191HepG2HNRNPC
chr7105524278105524360+intron-Distal3.351615.04671HepG2SFPQ
chr7105519735105519800+intron-Distal5.133667.16788HepG2RBFOX2
chr7105562211105562309+intron-Distal3.227453.54383HepG2HNRNPL
chr7105551447105551532+intron-Distal,intron-Proximal3.7023215.44395HepG2U2AF2
chr7105561439105561513+intron-Distal3.809023.16028HepG2SUGP2
chr7105587026105587106+intron-Distal4.170905.02991HepG2CSTF2
chr7105524765105524881+intron-Distal4.569067.67287HepG2MATR3
chr7105538768105538808+intron-Distal3.011503.53873HepG2HNRNPM
chr7105566791105566857+intron-Distal4.111276.98738HepG2SUGP2
chr7105563748105563838+intron-Distal3.472629.43572HepG2CSTF2T
chr7105520840105520918+intron-Distal3.357913.10946HepG2SFPQ
chr7105566787105566855+intron-Distal4.127885.66122HepG2MATR3
chr7105582029105582220+intron-Distal4.736685.86125HepG2HNRNPK
chr7105533011105533085+intron-Distal3.253914.00650HepG2TAF15
chr7105563735105563832+intron-Distal5.5836814.19389HepG2CSTF2
chr7105555290105555437+intron-Distal4.5165410.60103HepG2SUGP2
chr7105585844105585922+intron-Distal3.158833.49516HepG2CSTF2T
chr7105517767105517869+intron-Distal,intron-Proximal4.071406.75344HepG2EFTUD2
chr7105559391105559441+intron-Distal4.369674.78128HepG2SUGP2
chr7105567069105567150+intron-Distal3.272563.30286HepG2PTBP1
chr7105565646105565685+intron-Distal3.265553.84025HepG2SUGP2
chr7105547090105547174+intron-Distal4.015356.28005HepG2XPO5
chr7105572033105572179+intron-Distal5.8648932.53662HepG2QKI
chr7105524773105524861+intron-Distal4.361874.51299HepG2SUGP2
chr7105571764105571899+intron-Distal4.5774419.34756HepG2PCBP2
chr7105559683105559739+intron-Distal4.251086.61691HepG2RBFOX2
chr7105559680105559724+intron-Distal4.196983.96879HepG2MATR3
chr7105535339105535400+intron-Distal3.825315.92633HepG2HLTF
chr7105555354105555497+intron-Distal3.249156.20132HepG2MATR3
chr7105555134105555192+intron-Distal4.174443.62238HepG2MATR3
chr7105567145105567205+intron-Distal4.076523.80778HepG2QKI
chr7105517721105517787+intron-Proximal3.922936.72755HepG2RBM22
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for CDHR3 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for CDHR3 is not available on ENCORE database.

  • 60 RBPs can affect the levels of CDHR3.  








The Knockdown/knockout RNA-Seq assay for CDHR3 is not available on ENCORE database.





60 RBPs can affect the gene expression of CDHR3 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
CDHR3ENSG00000128536.11405.24770175.260401.209209.302707.73460HepG2ABCF1
CDHR3ENSG00000128536.11217.67120122.400400.830404.177003.45860HepG2BOP1
CDHR3ENSG00000128536.11177.06560112.364400.656002.429501.77920HepG2CPSF6
CDHR3ENSG00000128536.11136.0015060.563101.167005.204303.79070HepG2CSTF2
CDHR3ENSG00000128536.11298.63540194.677900.617204.489203.58150HepG2DAZAP1
CDHR3ENSG00000128536.11362.50900141.142101.3608015.9472014.60800HepG2DKC1
CDHR3ENSG00000128536.11362.69860149.522701.278309.520608.34430HepG2EIF4A3
CDHR3ENSG00000128536.11261.42340145.572300.844603.735702.94260HepG2EIF4B
CDHR3ENSG00000128536.11288.48810192.057600.586903.601702.66680HepG2EIF4G1
CDHR3ENSG00000128536.11262.32900151.831500.788804.281602.95120HepG2ESF1
CDHR3ENSG00000128536.11392.07020171.132101.1959013.9409012.75720HepG2ETF1
CDHR3ENSG00000128536.11105.24830176.97470-0.749702.271401.57060HepG2FIP1L1
CDHR3ENSG00000128536.11254.73660112.569201.178104.134102.89300HepG2FTO
CDHR3ENSG00000128536.11212.95840139.941000.605702.456601.82780HepG2G3BP1
CDHR3ENSG00000128536.11354.96430148.555601.2566010.690408.93770HepG2G3BP2
CDHR3ENSG00000128536.11300.83620127.357601.240008.648007.55860HepG2GPKOW
CDHR3ENSG00000128536.11192.21460106.925800.846003.679002.88860HepG2HNRNPC
CDHR3ENSG00000128536.11181.73220115.431300.654702.726002.01310HepG2HNRNPF
CDHR3ENSG00000128536.11229.95400141.685500.698603.135402.39310HepG2HNRNPK
CDHR3ENSG00000128536.11219.01300121.541200.849504.005503.26310HepG2HNRNPLL
CDHR3ENSG00000128536.11240.06720142.249600.754903.673202.90400HepG2IGF2BP2
CDHR3ENSG00000128536.11265.30730143.073900.890804.455303.15400HepG2KHSRP
CDHR3ENSG00000128536.11238.73250150.900500.661702.880902.21250HepG2MAGOH
CDHR3ENSG00000128536.11272.08470123.991501.133702.368201.47920HepG2MTPAP
CDHR3ENSG00000128536.11256.53330107.781201.250908.173006.93580HepG2NSUN2
CDHR3ENSG00000128536.11617.47630184.274101.7444022.1843020.71330HepG2PUF60
CDHR3ENSG00000128536.11128.09200195.47160-0.609802.616001.96320HepG2PUM2
CDHR3ENSG00000128536.11263.07070167.155600.654202.211501.57560HepG2RAVER1
CDHR3ENSG00000128536.11303.28990143.035701.084209.084208.26890HepG2RBM22
CDHR3ENSG00000128536.11227.97130148.075800.622403.151402.49890HepG2RECQL
CDHR3ENSG00000128536.11299.19880124.387401.266209.677108.52900HepG2RPLP0
CDHR3ENSG00000128536.11267.33670127.833401.064306.147504.96120HepG2RPS3A
CDHR3ENSG00000128536.11170.6343073.562301.213805.329404.27090HepG2RRP9
CDHR3ENSG00000128536.11184.23970280.46910-0.606301.888701.32880HepG2SF3A3
CDHR3ENSG00000128536.11193.34600120.292400.684502.688201.99270HepG2SF3B1
CDHR3ENSG00000128536.11270.90420133.849801.017104.872503.82220HepG2SNRNP70
CDHR3ENSG00000128536.11375.50730161.555301.2167014.2326013.33150HepG2SRFBP1
CDHR3ENSG00000128536.11282.85230155.238300.865506.085905.45140HepG2SRSF1
CDHR3ENSG00000128536.11306.59990129.461601.243707.984706.21060HepG2SRSF3
CDHR3ENSG00000128536.11238.23170113.416601.070605.949804.99200HepG2SRSF7
CDHR3ENSG00000128536.11210.91720126.297300.739804.382903.71800HepG2SRSF9
CDHR3ENSG00000128536.11679.59770140.271302.2764046.4386044.96390HepG2SSB
CDHR3ENSG00000128536.11147.18990206.91970-0.491402.174301.61050HepG2SUCLG1
CDHR3ENSG00000128536.11239.39080118.507801.014306.024605.01230HepG2TARDBP
CDHR3ENSG00000128536.11274.70170103.258601.411508.983708.17450HepG2TIAL1
CDHR3ENSG00000128536.11185.20270104.132000.830604.706904.01100HepG2TRIM56
CDHR3ENSG00000128536.11113.7638056.690201.004803.730802.84980HepG2UCHL5
CDHR3ENSG00000128536.11349.16420248.731800.489203.333202.57880HepG2UPF1
CDHR3ENSG00000128536.11164.7151087.874900.906303.123402.05420HepG2UPF2
CDHR3ENSG00000128536.11235.9317094.468801.320407.614806.42420HepG2XRN2
CDHR3ENSG00000128536.11317.40660112.640601.4945018.3011016.84120HepG2ZC3H8
CDHR3ENSG00000128536.1122.200405.069302.130602.268501.48480K562BOP1
CDHR3ENSG00000128536.1145.520906.056902.909805.979704.36050K562CNOT7
CDHR3ENSG00000128536.1134.847709.327001.901502.749701.77760K562CELF1
CDHR3ENSG00000128536.1122.923505.485902.062902.248901.47460K562FMR1
CDHR3ENSG00000128536.1127.605806.636302.056402.438301.72670K562GRSF1
CDHR3ENSG00000128536.1120.340403.573402.508902.541901.96680K562HNRNPC
CDHR3ENSG00000128536.1136.931004.395303.070705.123303.80270K562KRR1
CDHR3ENSG00000128536.1124.215005.021002.269702.752201.87770K562METAP2
CDHR3ENSG00000128536.1164.7199016.076302.009205.356804.19470K562PCBP3
CDHR3ENSG00000128536.1135.5596012.331601.527802.514501.75330K562POLR2G
CDHR3ENSG00000128536.1130.395403.299603.203402.783401.76400K562SUPV3L1
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for CDHR3 is not available on ENCORE database.





1 RBPs can affect the splicing of CDHR3 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SECDHR3ENSG00000128536.11chr7+105518652105518800105517263105517703105550672105550823-0.596000.000810.04941excludedHepG2AKAP1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for CDHR3 is not avaliable on ENCORE database.