C2CD2L

General Information

Gene Name       : C2CD2L
Gene ID             : ENSG00000172375.13
Essential Gene : No

Functions

Localization

Domains (AlphaFold: C2CD2L)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878C2CD2LENSG00000172375.131.724.993.35ENCSR000AEF
HepG2C2CD2LENSG00000172375.133.512.042.77ENCSR985KAT
K562C2CD2LENSG00000172375.1325.0919.9522.52ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for C2CD2L is not avaliable on ENCORE database.



Proteins bound to RNA
  • C2CD2L RNA is bound by 10 proteins.  







eCLIP assay for C2CD2L is not avaliable on ENCORE database.





10 proteins are bound to C2CD2L RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr11118986736118986822+3'-UTR,CDS,intron-Proximal3.784414.77019K562BUD13
chr11118987334118987396+3'-UTR3.654887.83682K562TIA1
chr11118987329118987375+3'-UTR4.671144.56348K562UPF1
chr11118987406118987477+3'-UTR3.205193.91588K562UPF1
chr11118987707118987755+3'-UTR4.567924.46422K562UPF1
chr11118986727118986803+3'-UTR,CDS,intron-Proximal4.760149.85896K562AQR
chr11118982997118983063+CDS,intron-Proximal4.032204.69223K562SF3B4
chr11118983032118983101+CDS,intron-Proximal4.382003.20743HepG2PPIG
chr11118983343118983442+CDS,intron-Distal,intron-Proximal3.449076.40067K562PRPF8
chr11118982335118982382+CDS,intron-Proximal5.060865.69951K562AQR
chr11118983024118983083+CDS,intron-Proximal3.362265.24083K562U2AF2
chr11118984416118984526+CDS,intron-Proximal4.810286.89468HepG2RBFOX2
chr11118978800118978886+CDS,intron-Proximal4.764278.30573K562AQR
chr11118984680118984726+CDS,intron-Proximal4.064383.49003K562PRPF8
chr11118985078118985190+intron-Distal,intron-Proximal3.310837.18794K562AQR
chr11118982519118982572+intron-Distal3.969434.22551K562SF3B4
chr11118983335118983403+intron-Distal,intron-Proximal4.856069.23542K562EFTUD2
chr11118973796118973875+intron-Distal4.134203.95192HepG2UPF1
chr11118984437118984510+intron-Proximal4.356104.79321K562RBFOX2
chr11118982340118982382+intron-Proximal4.204433.49003K562PRPF8
chr11118983142118983188+intron-Proximal4.376855.32062K562EFTUD2
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for C2CD2L is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for C2CD2L is not available on ENCORE database.

  • 90 RBPs can affect the levels of C2CD2L.  








The Knockdown/knockout RNA-Seq assay for C2CD2L is not available on ENCORE database.





90 RBPs can affect the gene expression of C2CD2L :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
C2CD2LENSG00000172375.8407.82160235.556300.791805.661703.73770HepG2ATP5C1
C2CD2LENSG00000172375.8378.04510273.857400.465002.972902.26540HepG2AUH
C2CD2LENSG00000172375.8218.60520124.877400.807703.317102.29180HepG2BCCIP
C2CD2LENSG00000172375.8204.63020108.512200.915104.235803.14450HepG2BCLAF1
C2CD2LENSG00000172375.8240.29000151.907300.661503.247502.41820HepG2CALR
C2CD2LENSG00000172375.8288.00670171.982900.743705.729404.83530HepG2CKAP4
C2CD2LENSG00000172375.8360.15570214.968900.744405.161503.68370HepG2CPSF7
C2CD2LENSG00000172375.8268.84720186.589200.526802.913402.25690HepG2CELF1
C2CD2LENSG00000172375.8323.06890200.628200.687205.478804.48350HepG2DAZAP1
C2CD2LENSG00000172375.8643.97200235.187701.4531017.1061015.69170HepG2DDX3X
C2CD2LENSG00000172375.8623.60430367.756200.761807.394405.38580HepG2DDX47
C2CD2LENSG00000172375.8274.82630122.778601.162406.767105.62040HepG2DDX55
C2CD2LENSG00000172375.8308.19000202.151200.608302.749002.13310HepG2DDX6
C2CD2LENSG00000172375.8200.76130135.379400.568402.400501.48660HepG2DHX30
C2CD2LENSG00000172375.8299.20230140.365201.0918010.046508.77260HepG2DNAJC21
C2CD2LENSG00000172375.8323.77860197.932900.709905.352304.25090HepG2EIF4G1
C2CD2LENSG00000172375.8310.34270189.606900.710804.290903.29150HepG2EIF4G2
C2CD2LENSG00000172375.8461.45350314.463300.553204.391003.66450HepG2ETF1
C2CD2LENSG00000172375.8397.53060263.594300.592602.938302.14490HepG2FIP1L1
C2CD2LENSG00000172375.8474.61340241.722800.973303.898702.69200HepG2FTO
C2CD2LENSG00000172375.8408.38970273.571000.577901.914001.37540HepG2GPKOW
C2CD2LENSG00000172375.8279.24790164.221000.765805.936404.56700HepG2HDGF
C2CD2LENSG00000172375.8357.58580261.072400.453702.111401.55380HepG2HNRNPLL
C2CD2LENSG00000172375.8363.89400204.177300.833605.514704.59150HepG2IGF2BP2
C2CD2LENSG00000172375.8316.23920213.326000.567903.032202.18580HepG2MSI2
C2CD2LENSG00000172375.8380.06290223.039400.768804.693803.88190HepG2NCBP2
C2CD2LENSG00000172375.8281.09850198.942600.498602.656001.90910HepG2NOL12
C2CD2LENSG00000172375.8757.79380239.892301.6593016.4426014.23930HepG2PABPC1
C2CD2LENSG00000172375.8351.14120198.525100.822605.311404.32170HepG2PABPC4
C2CD2LENSG00000172375.8160.2919094.723900.758802.709301.90880HepG2PRPF8
C2CD2LENSG00000172375.8295.45340214.065200.464802.507501.98260HepG2PTBP1
C2CD2LENSG00000172375.8366.91670189.908400.950008.056907.11140HepG2PUF60
C2CD2LENSG00000172375.8334.33200201.596500.729706.419605.59490HepG2PUM1
C2CD2LENSG00000172375.8248.52590175.191000.504402.713902.10220HepG2PUS1
C2CD2LENSG00000172375.8423.99320231.850200.870707.884406.91260HepG2QKI
C2CD2LENSG00000172375.8266.98250119.589501.158605.395204.42930HepG2RAVER1
C2CD2LENSG00000172375.8320.36230210.414300.606403.517002.76430HepG2RBM25
C2CD2LENSG00000172375.8175.48880238.23880-0.441001.866901.40330HepG2NELFE
C2CD2LENSG00000172375.8162.05830221.87840-0.453301.921901.39540HepG2RECQL
C2CD2LENSG00000172375.8196.75430117.527900.743302.848901.89290HepG2RPS10
C2CD2LENSG00000172375.8148.70980263.67480-0.826304.127403.15090HepG2RPS3A
C2CD2LENSG00000172375.8204.35010139.444000.551302.649402.01610HepG2SAFB2
C2CD2LENSG00000172375.8213.81500113.950900.907904.758203.53880HepG2SERBP1
C2CD2LENSG00000172375.8261.49810130.483901.002802.691001.40420HepG2SNRNP200
C2CD2LENSG00000172375.8453.27500287.533200.656602.704701.93230HepG2SNRNP70
C2CD2LENSG00000172375.8152.47910232.63410-0.609503.018502.52970HepG2SRSF1
C2CD2LENSG00000172375.8269.91840187.507300.525502.950502.30530HepG2SRSF5
C2CD2LENSG00000172375.8366.12000189.256600.9519010.209209.26510HepG2SRSF9
C2CD2LENSG00000172375.8153.63940257.70020-0.746104.462403.84250HepG2SSB
C2CD2LENSG00000172375.8285.52460176.054400.697502.538201.34620HepG2STAU1
C2CD2LENSG00000172375.8321.51570213.247100.592304.198103.46090HepG2SUCLG1
C2CD2LENSG00000172375.8211.25390122.227100.789303.084402.37440HepG2SUPV3L1
C2CD2LENSG00000172375.8222.32800152.161700.547002.573502.08850HepG2TIAL1
C2CD2LENSG00000172375.8267.84830185.533000.529602.555801.71900HepG2TUFM
C2CD2LENSG00000172375.8437.81240225.482100.957207.539606.50820HepG2U2AF1
C2CD2LENSG00000172375.8352.07500151.700601.214603.481302.37100HepG2U2AF2
C2CD2LENSG00000172375.8468.50070196.384101.254303.472002.53140HepG2UBE2L3
C2CD2LENSG00000172375.8129.1290072.205300.838503.171802.36090HepG2UCHL5
C2CD2LENSG00000172375.8199.29600270.02960-0.438202.029401.49990HepG2UTP3
C2CD2LENSG00000172375.8810.21420307.605401.3971024.8208023.59230HepG2ZNF622
C2CD2LENSG00000172375.83055.657502302.530700.408204.375803.54740K562AKAP8L
C2CD2LENSG00000172375.8756.936801166.17660-0.623506.229904.90800K562BOP1
C2CD2LENSG00000172375.81974.643502644.53860-0.421405.826404.08300K562CCDC124
C2CD2LENSG00000172375.81013.87390781.094800.376202.823001.52840K562CIRBP
C2CD2LENSG00000172375.81450.076201783.11150-0.298303.342502.11710K562CPEB4
C2CD2LENSG00000172375.81167.84540906.725500.365003.294002.14650K562DDX3X
C2CD2LENSG00000172375.81612.531101845.19890-0.194401.988301.41920K562DDX47
C2CD2LENSG00000172375.81210.61570919.312400.397004.690102.84250K562DDX6
C2CD2LENSG00000172375.81312.63650833.134100.655704.937703.18900K562EEF2
C2CD2LENSG00000172375.81309.54190804.845000.702207.873306.26630K562EFTUD2
C2CD2LENSG00000172375.81159.86130853.136800.443005.388703.69970K562EIF4B
C2CD2LENSG00000172375.81067.36480826.930900.368103.456901.98400K562EWSR1
C2CD2LENSG00000172375.8776.428301033.90060-0.413202.874301.72500K562FKBP4
C2CD2LENSG00000172375.8934.35160696.809500.423103.118301.57380K562G3BP1
C2CD2LENSG00000172375.8317.04430507.81370-0.679603.978203.09210K562G3BP2
C2CD2LENSG00000172375.81625.404401183.839500.457204.778603.73840K562GPKOW
C2CD2LENSG00000172375.8935.017001360.08190-0.540605.232603.76910K562HNRNPA1
C2CD2LENSG00000172375.81199.30220729.316100.717505.035503.48070K562IGF2BP2
C2CD2LENSG00000172375.81482.245201153.021700.362303.072401.59330K562LARP7
C2CD2LENSG00000172375.81308.338001593.73940-0.284703.547702.63860K562MTPAP
C2CD2LENSG00000172375.82754.854901918.774000.521703.955102.84620K562NAA15
C2CD2LENSG00000172375.81171.58510945.932800.308602.629501.42990K562NCBP2
C2CD2LENSG00000172375.8955.41690681.409000.487502.576501.63330K562PCBP2
C2CD2LENSG00000172375.81533.784101067.060600.523405.881204.48530K562PSIP1
C2CD2LENSG00000172375.81998.859702438.53400-0.286802.359901.38110K562PUM1
C2CD2LENSG00000172375.83752.302902283.653500.716303.944803.31290K562PUS1
C2CD2LENSG00000172375.82578.265502224.931400.212501.948801.43580K562RBM15
C2CD2LENSG00000172375.81002.09790713.316400.490303.342302.41310K562RBM22
C2CD2LENSG00000172375.81212.93510973.830200.316702.618901.65650K562RCC2
C2CD2LENSG00000172375.8491.75080800.63420-0.703205.123503.30690K562RRP9
C2CD2LENSG00000172375.82153.809601346.333100.677802.486601.37160K562SF1
C2CD2LENSG00000172375.8727.00750527.599500.462403.938502.91340K562SF3B4
C2CD2LENSG00000172375.8936.269901200.87990-0.359102.598601.37800K562SLBP
C2CD2LENSG00000172375.82575.316001546.197100.735903.321001.92590K562SNRNP200
C2CD2LENSG00000172375.81021.66520689.230500.567803.601702.37170K562SRSF5
C2CD2LENSG00000172375.81265.46730738.306700.777305.793604.74570K562TARDBP
C2CD2LENSG00000172375.81078.55640712.214000.598606.563005.22220K562TIA1
C2CD2LENSG00000172375.81119.24020699.198500.678605.071003.50610K562TRA2A
C2CD2LENSG00000172375.81413.665801877.66040-0.409507.055505.96710K562UPF1
C2CD2LENSG00000172375.81391.251001766.82300-0.344802.415501.30220K562UTP3
C2CD2LENSG00000172375.81302.579301670.69090-0.359105.727004.55570K562WDR43
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for C2CD2L is not available on ENCORE database.





7 RBPs can affect the splicing of C2CD2L :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEC2CD2LENSG00000172375.8chr11+118979893118980064118978092118978805118980813118980909-0.070000.002810.06854excludedK562AKAP8L
SEC2CD2LENSG00000172375.8chr11+118981556118981667118981270118981390118981761118981878-0.066000.007030.06144excludedK562AQR
SEC2CD2LENSG00000172375.8chr11+118979893118980064118978092118978805118980813118980909-0.070000.002820.03976excludedK562PUS1
SEC2CD2LENSG00000172375.8chr11+118979893118980064118978092118978805118980813118980909-0.070000.002830.07328excludedK562UTP18
SEC2CD2LENSG00000172375.8chr11+118981556118981667118981270118981390118981761118981878-0.160000.000010.00029excludedK562HNRNPC
RIC2CD2LENSG00000172375.8chr11+1189822301189831021189822301189823391189830371189831020.180000.001640.01155includedK562PUS1
RIC2CD2LENSG00000172375.8chr11+1189822301189831021189822301189823391189830371189831020.230000.000420.08060includedK562LARP7
RIC2CD2LENSG00000172375.8chr11+1189822301189831021189822301189823391189830371189831020.166000.006400.06353includedK562AGGF1
RIC2CD2LENSG00000172375.8chr11+1189822301189831021189822301189823391189830371189831020.149000.007680.06251includedK562AKAP8L
RIC2CD2LENSG00000172375.8chr11+118984789118987831118984789118985075118986734118987831-0.623000.000000.00000excludedK562AQR
MXEC2CD2LENSG00000172375.8chr11+1189831911189833191189834091189835841189830371189831021189843201189844220.110000.016990.096601includedK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for C2CD2L is not avaliable on ENCORE database.