BBS2

General Information

Gene Name       : BBS2
Gene ID             : ENSG00000125124.11
Essential Gene : No

Functions

Localization

Domains (AlphaFold: BBS2)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878BBS2ENSG00000125124.119.2011.0010.10ENCSR000AEF
HepG2BBS2ENSG00000125124.1132.1233.4432.78ENCSR985KAT
K562BBS2ENSG00000125124.115.376.876.12ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for BBS2 is not avaliable on ENCORE database.



Proteins bound to RNA
  • BBS2 RNA is bound by 9 proteins.  







eCLIP assay for BBS2 is not avaliable on ENCORE database.





9 proteins are bound to BBS2 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr165653633156536385-3'-UTR,CDS,intron-Distal,intron-Proximal3.309095.58362HepG2U2AF2
chr165651851356518579-3'-UTR,intron-Distal,intron-Proximal4.655356.49450K562PUM2
chr165654386456543947-3'-UTR,CDS,intron-Distal,intron-Proximal3.826268.50755HepG2BCLAF1
chr165653631456536380-3'-UTR,CDS,intron-Distal,intron-Proximal3.022453.80645HepG2U2AF1
chr165653621956536298-3'-UTR,CDS,intron-Distal,intron-Proximal4.591934.84481HepG2PPIG
chr165653235856532447-3'-UTR,CDS,intron-Distal,intron-Proximal3.190615.40132HepG2BCLAF1
chr165655375656553934-5'-UTR,CDS,intron-Distal,intron-Proximal3.244423.40404HepG2NCBP2
chr165655386156553903-5'-UTR,intron-Distal4.760203.99162HepG2DDX3X
chr165655380956553861-5'-UTR,intron-Distal3.593913.16711HepG2DDX3X
chr165653986956539931-CDS,intron-Distal,intron-Proximal3.119344.26492HepG2BCLAF1
chr165653659256536700-CDS,intron-Distal,intron-Proximal3.474734.93175HepG2GRWD1
chr165653658156536667-CDS,intron-Distal,intron-Proximal3.124546.27819HepG2PPIG
chr165654003156540137-CDS,intron-Distal,intron-Proximal3.348367.13168HepG2BCLAF1
chr165652964256529717-intron-Distal3.828263.19026HepG2HNRNPL
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for BBS2 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for BBS2 is not available on ENCORE database.

  • 89 RBPs can affect the levels of BBS2.  








The Knockdown/knockout RNA-Seq assay for BBS2 is not available on ENCORE database.





89 RBPs can affect the gene expression of BBS2 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
BBS2ENSG00000125124.7878.380301090.27320-0.311803.504202.83390HepG2ACO1
BBS2ENSG00000125124.7654.85550869.20980-0.408502.861501.84880HepG2ADAR
BBS2ENSG00000125124.72147.653101218.390000.817709.397408.48080HepG2AKAP1
BBS2ENSG00000125124.7875.175301095.46830-0.323903.434902.59100HepG2AKAP8L
BBS2ENSG00000125124.7567.69210809.82210-0.512503.981503.17070HepG2CPSF6
BBS2ENSG00000125124.7808.793501043.11870-0.367103.960003.17830HepG2DKC1
BBS2ENSG00000125124.7708.48380875.26580-0.305002.535001.85710HepG2DNAJC21
BBS2ENSG00000125124.7795.395001065.23390-0.421402.577201.95940HepG2EIF4A3
BBS2ENSG00000125124.7707.153101037.04150-0.552403.339202.58780HepG2EIF4B
BBS2ENSG00000125124.71130.933801502.95140-0.410305.789204.65560HepG2EIF4G1
BBS2ENSG00000125124.71444.083901109.055200.380702.121701.44340HepG2FIP1L1
BBS2ENSG00000125124.71200.30080661.290000.8599013.0556011.40760HepG2FUBP3
BBS2ENSG00000125124.7497.28370666.92290-0.423502.517701.66790HepG2GEMIN5
BBS2ENSG00000125124.7518.78670917.97400-0.823308.114107.05930HepG2GPKOW
BBS2ENSG00000125124.71244.552601040.951800.257602.572501.62530HepG2HDGF
BBS2ENSG00000125124.71664.430001400.049900.249402.778301.84250HepG2HNRNPA2B1
BBS2ENSG00000125124.7750.08010982.88780-0.390002.920702.21020HepG2HNRNPC
BBS2ENSG00000125124.7634.92990876.04160-0.464403.370502.68290HepG2HNRNPLL
BBS2ENSG00000125124.7793.281501027.58800-0.373403.508502.70030HepG2IGF2BP1
BBS2ENSG00000125124.71184.65910997.352100.248202.938202.18560HepG2ILF2
BBS2ENSG00000125124.7851.756601074.97130-0.335802.033701.46750HepG2MAGOH
BBS2ENSG00000125124.7736.729601081.01700-0.553204.119403.36430HepG2MATR3
BBS2ENSG00000125124.7919.528801510.57230-0.7161012.8817011.29220HepG2NOL12
BBS2ENSG00000125124.7805.89340966.47210-0.262102.249201.47750HepG2PARN
BBS2ENSG00000125124.7523.552301441.99110-1.4617035.9112034.06780HepG2PUF60
BBS2ENSG00000125124.72021.122501107.806600.8674020.4862019.01170HepG2QKI
BBS2ENSG00000125124.7637.813801005.52960-0.656703.455502.66960HepG2RAVER1
BBS2ENSG00000125124.71705.176401272.392000.422304.980703.87320HepG2RBM15
BBS2ENSG00000125124.71335.238901570.18450-0.233802.082601.61600HepG2RBM22
BBS2ENSG00000125124.71361.181601005.434600.436904.559803.71130HepG2RBM25
BBS2ENSG00000125124.7835.223601188.15240-0.508504.127502.89740HepG2RBM27
BBS2ENSG00000125124.7883.898001124.25080-0.347002.763302.08090HepG2RPLP0
BBS2ENSG00000125124.7871.543001243.41320-0.512703.291402.41930HepG2RPS3A
BBS2ENSG00000125124.7823.473901118.56340-0.441903.275502.10080HepG2RPS5
BBS2ENSG00000125124.71083.93610869.524800.317903.609802.89080HepG2SAFB2
BBS2ENSG00000125124.7633.665201062.66000-0.745905.737704.74470HepG2SF3A3
BBS2ENSG00000125124.72298.825201773.468500.374206.926706.23390HepG2SRFBP1
BBS2ENSG00000125124.71294.076301111.615500.219202.003601.58320HepG2SRSF1
BBS2ENSG00000125124.7584.63220933.03420-0.674405.023903.63750HepG2SRSF3
BBS2ENSG00000125124.71188.957401539.79550-0.373005.381004.71240HepG2SSB
BBS2ENSG00000125124.71334.598601619.21000-0.278903.450302.77050HepG2SUCLG1
BBS2ENSG00000125124.71879.00310999.236200.9110023.7917022.37100HepG2TAF15
BBS2ENSG00000125124.71271.75080918.084600.470005.480204.31530HepG2TIA1
BBS2ENSG00000125124.7661.61320948.78420-0.520105.690205.02340HepG2TIAL1
BBS2ENSG00000125124.7726.34260957.22420-0.398204.659103.96570HepG2TRIM56
BBS2ENSG00000125124.71145.818101408.79800-0.298102.373401.56870HepG2TUFM
BBS2ENSG00000125124.7683.28970948.57310-0.473303.871603.13290HepG2U2AF1
BBS2ENSG00000125124.7470.874101048.05880-1.154303.828202.65650HepG2U2AF2
BBS2ENSG00000125124.7415.55900296.038700.489202.723101.51270K562ABCF1
BBS2ENSG00000125124.7432.81520268.526600.688606.657505.13730K562BCLAF1
BBS2ENSG00000125124.7338.24440178.716000.920306.189804.87280K562BOP1
BBS2ENSG00000125124.7888.54320718.208500.306902.423401.33400K562CCDC124
BBS2ENSG00000125124.7443.74960278.498600.672005.234603.13660K562CEBPZ
BBS2ENSG00000125124.7482.69860334.294700.529902.992101.48830K562CKAP4
BBS2ENSG00000125124.7402.85120190.010901.0841010.694209.13870K562CPSF6
BBS2ENSG00000125124.7286.21420203.717200.490402.343601.38560K562CSTF2
BBS2ENSG00000125124.7984.72150597.761800.720008.992607.27830K562CELF1
BBS2ENSG00000125124.7481.60760320.113600.589204.684203.08590K562DDX21
BBS2ENSG00000125124.7460.48430341.738600.430202.885001.82130K562DDX3X
BBS2ENSG00000125124.7152.03520290.44690-0.933907.167805.89850K562EIF3G
BBS2ENSG00000125124.7690.94720486.107000.507204.932303.69610K562EIF4G2
BBS2ENSG00000125124.7286.66360176.008500.703604.092102.51580K562EXOSC5
BBS2ENSG00000125124.7321.83450212.830300.596503.462402.50520K562FIP1L1
BBS2ENSG00000125124.7356.37260193.361500.882006.388705.06880K562FMR1
BBS2ENSG00000125124.7305.59670163.904200.898705.893004.50700K562FTO
BBS2ENSG00000125124.7145.79790371.33020-1.348708.289707.31230K562FXR1
BBS2ENSG00000125124.7340.24220249.950100.444802.557701.46340K562GLRX3
BBS2ENSG00000125124.7447.92270306.250400.548404.046902.74750K562HNRNPA1
BBS2ENSG00000125124.7151.84790220.19910-0.536202.182901.64430K562HNRNPC
BBS2ENSG00000125124.7508.15120339.134700.583305.062403.84090K562HNRNPU
BBS2ENSG00000125124.7510.99800288.531600.824507.224705.95390K562HSPD1
BBS2ENSG00000125124.7494.15800295.058500.743903.521201.88290K562ILF2
BBS2ENSG00000125124.7312.59440154.926501.012605.749304.34340K562KRR1
BBS2ENSG00000125124.7238.81750447.96220-0.907509.272207.67380K562MAGOH
BBS2ENSG00000125124.7253.62790447.08190-0.817807.943706.28050K562MATR3
BBS2ENSG00000125124.7320.80420177.073200.857205.838304.53790K562METAP2
BBS2ENSG00000125124.7354.49630262.789600.431802.549901.77230K562MTPAP
BBS2ENSG00000125124.7506.08240291.984900.793409.781608.49450K562NSUN2
BBS2ENSG00000125124.7240.02550398.60960-0.731805.356803.98650K562PCBP2
BBS2ENSG00000125124.7106.84910210.47720-0.978104.131503.21510K562PRPF8
BBS2ENSG00000125124.7124.50980435.20940-1.8055028.6019026.56020K562PTBP1
BBS2ENSG00000125124.7291.19940530.37200-0.865007.338806.00810K562PUF60
BBS2ENSG00000125124.7782.19880552.737300.500804.813603.53470K562PUM2
BBS2ENSG00000125124.7264.19840417.41590-0.659904.900503.74330K562RBM22
BBS2ENSG00000125124.789.72390153.03250-0.770302.924301.81190K562SAFB
BBS2ENSG00000125124.7299.34840172.564000.794604.276203.04840K562SF3B1
BBS2ENSG00000125124.7296.46290412.21360-0.475503.208002.28680K562SF3B4
BBS2ENSG00000125124.7214.91360123.265500.801904.124102.56030K562SLBP
BBS2ENSG00000125124.7427.04300295.176200.532704.286203.14810K562SRPK2
BBS2ENSG00000125124.7496.90170285.696000.798408.671606.59290K562SRSF7
BBS2ENSG00000125124.7418.98400279.224700.585403.649002.06760K562SSRP1
BBS2ENSG00000125124.7383.03470255.372900.584803.303801.90770K562STAU1
BBS2ENSG00000125124.7208.94790431.82190-1.0473010.159208.66640K562TARDBP
BBS2ENSG00000125124.7453.83050309.597600.551704.694303.78430K562UPF1
BBS2ENSG00000125124.7372.54310265.074500.490902.498201.36130K562UTP3
BBS2ENSG00000125124.7416.99840264.913200.654405.055703.85550K562WDR3
BBS2ENSG00000125124.7109.49040247.71850-1.177905.671203.21110K562XRCC6
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for BBS2 is not available on ENCORE database.





6 RBPs can affect the splicing of BBS2 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
A3SSBBS2ENSG00000125124.7chr16-5653234856532608565323485653248056533689565338190.199000.002230.05043longerHepG2U2AF2
A3SSBBS2ENSG00000125124.7chr16-5653234856532608565323485653248056533689565338190.104000.000050.01772longerHepG2NCBP2
A3SSBBS2ENSG00000125124.7chr16-5653234856532608565323485653248056533689565338190.159000.000290.05045longerHepG2TIAL1
A3SSBBS2ENSG00000125124.7chr16-5653234856532608565323485653248056533689565338190.147000.000270.01338longerHepG2U2AF1
RIBBS2ENSG00000125124.7chr16-5653622856536720565362285653636856536584565367200.111000.006630.09011includedHepG2PCBP2
RIBBS2ENSG00000125124.7chr16-5653087856531792565308785653099156531654565317920.214000.000000.00002includedHepG2U2AF2
RIBBS2ENSG00000125124.7chr16-5653622856536720565362285653636856536584565367200.232000.000000.00001includedHepG2U2AF2
RIBBS2ENSG00000125124.7chr16-5653622856536720565362285653636856536584565367200.219000.000170.00347includedHepG2PRPF8
RIBBS2ENSG00000125124.7chr16-5653087856531792565308785653099156531654565317920.129000.000020.00032includedHepG2U2AF1
RIBBS2ENSG00000125124.7chr16-5653087856531792565308785653099156531654565317920.161000.004580.06886includedK562U2AF1
RIBBS2ENSG00000125124.7chr16-5653622856536720565362285653636856536584565367200.142000.007940.09868includedHepG2TIAL1
RIBBS2ENSG00000125124.7chr16-5653622856536720565362285653636856536584565367200.108000.002360.02771includedHepG2NCBP2

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for BBS2 is not avaliable on ENCORE database.