BABAM1

General Information

Gene Name       : BABAM1
Gene ID             : ENSG00000105393.15
Essential Gene : No

Functions

Localization

Domains (AlphaFold: BABAM1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878BABAM1ENSG00000105393.1530.1058.9744.53ENCSR000AEF
HepG2BABAM1ENSG00000105393.1562.2239.0550.63ENCSR985KAT
K562BABAM1ENSG00000105393.1589.4376.1882.81ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for BABAM1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • BABAM1 RNA is bound by 16 proteins.  







eCLIP assay for BABAM1 is not avaliable on ENCORE database.





16 proteins are bound to BABAM1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr191738743117387485+3'-UTR,CDS,intron-Distal,intron-Proximal4.3980613.47152HepG2PRPF8
chr191738471217384799+3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal3.513068.07578K562YBX3
chr191738768517387712+3'-UTR,CDS,intron-Distal3.255563.36945K562ZNF622
chr191739009317390125+3'-UTR,intron-Distal4.925964.18952HepG2SUB1
chr191738762417387701+3'-UTR,CDS,intron-Distal,intron-Proximal3.790224.36782K562DDX55
chr191738497617384994+3'-UTR,5'-UTR,CDS,intron-Distal3.094214.74027K562YBX3
chr191738242017382449+3'-UTR,CDS,intron-Distal4.7008514.02980K562YBX3
chr191738743217387500+3'-UTR,CDS,intron-Distal,intron-Proximal5.0311117.55185K562AQR
chr191738240417382420+3'-UTR,CDS,intron-Distal,intron-Proximal4.110839.32771K562YBX3
chr191738989617389968+3'-UTR,CDS,intron-Distal3.534993.81620HepG2LARP4
chr191738992817390022+3'-UTR,intron-Distal3.010463.22948K562LSM11
chr191738995217390089+3'-UTR,intron-Distal4.5747317.04758K562PABPC4
chr191738482717384882+3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal3.803687.77750HepG2PRPF8
chr191737959217379696+5'-UTR,CDS,intron-Proximal3.354968.29694HepG2PPIG
chr191737831617378382+5'-UTR,intron-Proximal4.8487812.91190HepG2PRPF8
chr191737957117379629+5'-UTR,CDS,intron-Proximal3.154285.33841K562DDX24
chr191737825417378307+5'-UTR3.098593.95805K562DDX3X
chr191737829417378338+5'-UTR,intron-Proximal3.957764.01763HepG2GRWD1
chr191737832417378333+5'-UTR,intron-Proximal4.5118712.08233K562AQR
chr191737832917378381+5'-UTR,intron-Proximal3.509095.70176HepG2AQR
chr191737833317378366+5'-UTR,intron-Proximal5.9703337.59235K562AQR
chr191737956317379705+5'-UTR,CDS,intron-Proximal4.1148916.83550HepG2AQR
chr191737955517379674+5'-UTR,CDS,intron-Proximal4.1626343.96225K562AQR
chr191737960817379715+5'-UTR,CDS,intron-Proximal3.299673.05085HepG2SRSF1
chr191737979917379861+CDS,intron-Proximal4.324317.93948K562ZNF622
chr191737977317379843+5'-UTR,CDS,intron-Proximal4.044043.31335K562MTPAP
chr191737969617379781+5'-UTR,CDS,intron-Proximal3.403397.61685HepG2PPIG
chr191737970117379768+5'-UTR,CDS,intron-Proximal3.184887.01182K562ZNF622
chr191737973517379831+5'-UTR,CDS,intron-Proximal3.671629.72069K562UCHL5
chr191737965417379710+5'-UTR,CDS4.048266.40330K562UCHL5
chr191737978117379879+5'-UTR,CDS,intron-Proximal3.991475.86107HepG2PPIG
chr191738953117389605+intron-Distal,intron-Proximal3.118463.40404HepG2LSM11
chr191737838117378431+intron-Distal,intron-Proximal6.5393715.72370K562AQR
chr191737837217378380+intron-Proximal6.0021824.65056K562AQR
chr191737836617378372+intron-Proximal5.9423423.84012K562AQR
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for BABAM1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for BABAM1 is not available on ENCORE database.

  • 77 RBPs can affect the levels of BABAM1.  








The Knockdown/knockout RNA-Seq assay for BABAM1 is not available on ENCORE database.





77 RBPs can affect the gene expression of BABAM1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
BABAM1ENSG00000105393.11774.36370920.05020-0.248702.170601.61830HepG2ACO1
BABAM1ENSG00000105393.111643.743601264.340600.378502.351601.85680HepG2AKAP1
BABAM1ENSG00000105393.11693.629701095.82130-0.659807.428106.50500HepG2BOP1
BABAM1ENSG00000105393.11660.99460829.14160-0.327002.081801.40570HepG2CALR
BABAM1ENSG00000105393.11714.86060993.88540-0.475403.627302.75080HepG2CIRBP
BABAM1ENSG00000105393.11682.35880919.75630-0.430705.673104.78320HepG2CKAP4
BABAM1ENSG00000105393.11431.33660604.35410-0.486603.671802.60900HepG2DDX24
BABAM1ENSG00000105393.11677.87500880.21450-0.376803.789903.02110HepG2DKC1
BABAM1ENSG00000105393.11738.04400589.305100.324602.593001.90780HepG2DNAJC21
BABAM1ENSG00000105393.11774.32780584.145200.406504.851204.02650HepG2DNAJC2
BABAM1ENSG00000105393.11927.27960693.453800.419102.714201.80100HepG2EEF2
BABAM1ENSG00000105393.11587.529801076.16230-0.873207.429106.33280HepG2EIF4B
BABAM1ENSG00000105393.111150.776701406.52070-0.289503.309802.66120HepG2ETF1
BABAM1ENSG00000105393.11653.53460503.189800.377102.705501.55240HepG2FAM120A
BABAM1ENSG00000105393.11721.43570955.85020-0.405903.425202.55400HepG2FUBP3
BABAM1ENSG00000105393.11857.336301098.35080-0.357402.349301.53240HepG2G3BP2
BABAM1ENSG00000105393.11715.988701140.37180-0.671506.163705.23390HepG2GPKOW
BABAM1ENSG00000105393.11949.93990657.411400.530907.607306.63990HepG2HNRNPU
BABAM1ENSG00000105393.11837.98630671.521500.319403.330802.53230HepG2ILF2
BABAM1ENSG00000105393.11756.082801121.86660-0.569304.391103.61260HepG2MATR3
BABAM1ENSG00000105393.11385.08930597.97730-0.634902.754001.66400HepG2NONO
BABAM1ENSG00000105393.11719.756801022.49810-0.506503.874603.03120HepG2PABPC4
BABAM1ENSG00000105393.11523.98320650.70650-0.312502.359001.57100HepG2PARN
BABAM1ENSG00000105393.11787.258201079.49430-0.455406.012205.17170HepG2PCBP1
BABAM1ENSG00000105393.11305.26870465.48720-0.608705.052003.40710HepG2PKM
BABAM1ENSG00000105393.111091.75040937.117100.220201.995401.45350HepG2PUS1
BABAM1ENSG00000105393.11982.263101189.61010-0.276302.242301.66990HepG2QKI
BABAM1ENSG00000105393.11302.28270614.92770-1.024506.501405.44570HepG2RAVER1
BABAM1ENSG00000105393.111731.482601330.379200.380104.389603.33940HepG2RBM15
BABAM1ENSG00000105393.11884.774301175.58680-0.410004.613503.98920HepG2RBM22
BABAM1ENSG00000105393.11731.971901079.65700-0.560706.226605.25260HepG2RBM25
BABAM1ENSG00000105393.11539.37610784.97940-0.541402.509501.56890HepG2RBM27
BABAM1ENSG00000105393.111389.710501157.262900.264002.098301.49370HepG2RPLP0
BABAM1ENSG00000105393.11898.84430585.445400.618409.976708.87070HepG2SAFB2
BABAM1ENSG00000105393.11566.446501077.16820-0.9272012.8515011.44090HepG2SF3B1
BABAM1ENSG00000105393.11496.346501143.59430-1.2042031.6907030.08000HepG2SF3B4
BABAM1ENSG00000105393.11934.68290682.713800.453106.391505.47780HepG2SMN1
BABAM1ENSG00000105393.11638.581801198.54360-0.908307.353106.07410HepG2SNRNP70
BABAM1ENSG00000105393.11694.023001193.67340-0.7824015.6533014.72440HepG2SRSF1
BABAM1ENSG00000105393.11607.47370971.12420-0.6768011.9076010.90450HepG2SRSF9
BABAM1ENSG00000105393.11563.632001072.94380-0.9287017.9366016.68730HepG2TAF15
BABAM1ENSG00000105393.11796.79400985.86420-0.307202.315201.54840HepG2TIA1
BABAM1ENSG00000105393.11858.495701092.73830-0.348102.565301.95800HepG2U2AF1
BABAM1ENSG00000105393.111881.431701169.469200.6859021.2392020.07310HepG2ZNF622
BABAM1ENSG00000105393.112525.413401746.969200.5316010.163009.16510K562AGGF1
BABAM1ENSG00000105393.112426.806901919.710500.338103.268402.17760K562AKAP8
BABAM1ENSG00000105393.112651.913701817.814300.544707.438006.32230K562AKAP8L
BABAM1ENSG00000105393.111475.939202074.57700-0.491204.811404.07590K562AQR
BABAM1ENSG00000105393.112633.646503228.63500-0.293903.218302.16890K562CELF1
BABAM1ENSG00000105393.111932.200202278.21050-0.237702.448001.82980K562DDX47
BABAM1ENSG00000105393.111217.275501001.339600.281602.605001.35170K562DDX6
BABAM1ENSG00000105393.112451.216901956.013000.325504.612203.43810K562DKC1
BABAM1ENSG00000105393.111257.426701031.848000.285102.046601.33800K562EIF4A3
BABAM1ENSG00000105393.111130.70960900.706400.328002.963001.61520K562EWSR1
BABAM1ENSG00000105393.112211.899301455.998400.603207.875906.36850K562FIP1L1
BABAM1ENSG00000105393.11816.024201289.85360-0.660506.765904.86870K562FKBP4
BABAM1ENSG00000105393.111258.338801073.080800.229701.972401.44470K562FXR1
BABAM1ENSG00000105393.11288.82240665.35080-1.2039012.2469010.54060K562G3BP2
BABAM1ENSG00000105393.111595.380201896.06770-0.249102.460001.38910K562GLRX3
BABAM1ENSG00000105393.111344.801901682.76600-0.323402.952001.84050K562HNRNPA1
BABAM1ENSG00000105393.11838.168101484.84060-0.8250013.8302012.57900K562HNRNPC
BABAM1ENSG00000105393.111831.437801197.560500.612806.101604.64560K562HNRNPM
BABAM1ENSG00000105393.111350.68050949.250200.508703.486202.28310K562IGF2BP2
BABAM1ENSG00000105393.11763.331901122.63800-0.556502.733701.80730K562KRR1
BABAM1ENSG00000105393.112609.184602161.094400.271702.553001.68590K562MBNL1
BABAM1ENSG00000105393.111513.022701993.45250-0.397806.968905.73340K562MTPAP
BABAM1ENSG00000105393.111746.878302214.99120-0.342507.383906.24710K562NSUN2
BABAM1ENSG00000105393.111368.746101844.06840-0.430003.534301.73940K562PKM
BABAM1ENSG00000105393.112268.486101652.818800.456704.708003.59700K562PPIG
BABAM1ENSG00000105393.112551.833403047.21730-0.256002.306501.34030K562PUM1
BABAM1ENSG00000105393.113222.495201802.675700.837906.525705.73230K562PUS1
BABAM1ENSG00000105393.11367.57610634.76890-0.788203.973702.23450K562RAVER1
BABAM1ENSG00000105393.112642.961301756.516500.5893012.0085010.77490K562RBM15
BABAM1ENSG00000105393.111896.510302185.50250-0.204602.109401.39090K562SF3A3
BABAM1ENSG00000105393.11853.790001250.32880-0.550403.137002.09890K562SF3B1
BABAM1ENSG00000105393.111095.89560849.554400.367202.934401.84120K562SRSF4
BABAM1ENSG00000105393.111371.176001747.31690-0.349702.490701.30560K562STAU1
BABAM1ENSG00000105393.111229.51370961.163900.355102.563201.88030K562TARDBP
BABAM1ENSG00000105393.111123.37860927.181900.276801.997501.30910K562TIA1
BABAM1ENSG00000105393.111176.48000910.118700.370302.832701.72310K562TRA2A
BABAM1ENSG00000105393.11477.81730644.65420-0.432102.476501.45130K562U2AF1
BABAM1ENSG00000105393.11400.11230665.88130-0.734908.661807.22600K562U2AF2
BABAM1ENSG00000105393.111878.670402348.59530-0.322105.211404.25920K562UPF1
BABAM1ENSG00000105393.111660.620402009.63000-0.275202.416201.59610K562WDR3
BABAM1ENSG00000105393.111740.723602089.70530-0.263603.837102.85140K562WDR43
BABAM1ENSG00000105393.111908.477702337.20470-0.292402.501301.68920K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for BABAM1 is not available on ENCORE database.





8 RBPs can affect the splicing of BABAM1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEBABAM1ENSG00000105393.11chr19+1738240517382464173795641737990017384712173848330.078000.000080.00165includedHepG2U2AF2
SEBABAM1ENSG00000105393.11chr19+1738240517382464173795641737990017384712173848330.069000.000200.01373includedHepG2SFPQ
SEBABAM1ENSG00000105393.11chr19+1738471217384833173824051738246417387303173875320.101000.000090.09633includedK562ILF3
SEBABAM1ENSG00000105393.11chr19+173847121738483317382405173824641738730317387364-0.111000.002230.07642excludedHepG2MATR3
A5SSBABAM1ENSG00000105393.11chr19+1738730317387532173873031738743317387631173878360.140000.000000.00000longerK562AQR
A5SSBABAM1ENSG00000105393.11chr19+1738763117387836173876311738771817389653173899810.110000.000000.00000longerK562AQR
MXEBABAM1ENSG00000105393.11chr19+1737956417379900173824051738246417378310173783361738730317387433-0.252000.000080.003692includedHepG2MATR3
MXEBABAM1ENSG00000105393.11chr19+1737960217379900173824051738246417378286173783361738471217384833-0.068000.004320.090822includedK562RBM15
MXEBABAM1ENSG00000105393.11chr19+17379564173799001738240517382464173783101737833617387303173874330.214000.007920.067501includedHepG2SFPQ
MXEBABAM1ENSG00000105393.11chr19+17379602173799001738240517382464173782511737833617387303173883320.103000.007810.066721includedHepG2SFPQ
MXEBABAM1ENSG00000105393.11chr19+1737956417379900173824051738246417378310173783361738730317387433-0.287000.002100.063922includedHepG2SF3B4
MXEBABAM1ENSG00000105393.11chr19+1737956417379900173824051738246417378310173783361738730317387433-0.145000.002460.079572includedK562SAFB
MXEBABAM1ENSG00000105393.11chr19+1737960217379900173847121738483317378286173783361738730317387364-0.105000.000210.015602includedK562SAFB
MXEBABAM1ENSG00000105393.11chr19+1737960217379900173824051738246417378251173783361738730317388332-0.129000.000560.030322includedK562SAFB

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for BABAM1 is not avaliable on ENCORE database.