AGPAT4

General Information

Gene Name       : AGPAT4
Gene ID             : ENSG00000026652.13
Essential Gene : No

Functions

Localization

Domains (AlphaFold: AGPAT4)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878AGPAT4ENSG00000026652.130.650.940.79ENCSR000AEF
HepG2AGPAT4ENSG00000026652.130.020.020.02ENCSR985KAT
K562AGPAT4ENSG00000026652.134.043.813.92ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for AGPAT4 is not avaliable on ENCORE database.



Proteins bound to RNA
  • AGPAT4 RNA is bound by 15 proteins.  







eCLIP assay for AGPAT4 is not avaliable on ENCORE database.





15 proteins are bound to AGPAT4 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr6161557275161557343-3'-UTR,intron-Distal,intron-Proximal4.8583514.52383K562TARDBP
chr6161575183161575265-3'-UTR,CDS,intron-Distal4.220583.59941K562UCHL5
chr6161574645161574705-3'-UTR,intron-Distal,intron-Proximal5.4614724.98167K562EIF4G2
chr6161574863161574917-3'-UTR,intron-Distal5.6247618.73721K562EIF4G2
chr6161557283161557331-3'-UTR,intron-Distal,intron-Proximal4.390963.26170K562EIF4G2
chr6161574721161574783-3'-UTR,intron-Distal6.2510214.49571K562EIF4G2
chr6161574531161574580-3'-UTR,intron-Distal,intron-Proximal4.6269416.70946K562SF3B4
chr6161574783161574816-3'-UTR,intron-Distal5.588347.26071K562EIF4G2
chr6161574917161575012-3'-UTR,intron-Distal7.3346831.45845K562EIF4G2
chr6161574970161575032-3'-UTR,intron-Distal5.4393811.85065K562TARDBP
chr6161557159161557355-3'-UTR,intron-Distal,intron-Proximal3.010183.91938K562UPF1
chr6161574655161574717-3'-UTR,intron-Distal,intron-Proximal4.305939.26108K562TARDBP
chr6161574560161574645-3'-UTR,intron-Distal,intron-Proximal6.8891526.43382K562EIF4G2
chr6161557182161557300-3'-UTR,intron-Distal,intron-Proximal3.586926.02629K562ZC3H11A
chr6161574705161574721-3'-UTR,intron-Distal5.488698.53131K562EIF4G2
chr6161574717161574850-3'-UTR,intron-Distal5.8502315.10225K562TARDBP
chr6161574563161574606-3'-UTR,intron-Distal,intron-Proximal4.927526.02937K562AATF
chr6161574856161574970-3'-UTR,intron-Distal6.1576320.52147K562TARDBP
chr6161574561161574643-3'-UTR,intron-Distal,intron-Proximal4.758096.23114K562TARDBP
chr6161615851161615910-intron-Distal4.8222215.41522K562AGGF1
chr6161615406161615545-intron-Distal4.009827.43919K562AKAP8L
chr6161615455161615531-intron-Distal5.101108.39842K562HNRNPL
chr6161615558161615597-intron-Distal6.0859612.92204K562AGGF1
chr6161599941161600104-intron-Distal4.177373.75568K562SLTM
chr6161563642161563721-intron-Distal4.140085.16181K562PTBP1
chr6161615409161615542-intron-Distal3.611153.57928K562GTF2F1
chr6161615845161615900-intron-Distal4.136924.46313K562HNRNPL
chr6161615412161615453-intron-Distal7.4153529.21463K562AGGF1
chr6161573206161573296-intron-Distal4.085263.06617K562HNRNPK
chr6161615955161616006-intron-Distal4.9718210.99456K562AGGF1
chr6161693682161693763-intron-Distal4.183446.26655K562EIF4G2
chr6161615453161615548-intron-Distal8.0999553.65212K562AGGF1
chr6161615396161615455-intron-Distal4.602745.63065K562HNRNPL
chr6161694280161694393-intron-Distal3.504394.35933K562RBFOX2
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for AGPAT4 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for AGPAT4 is not available on ENCORE database.

  • 70 RBPs can affect the levels of AGPAT4.  








The Knockdown/knockout RNA-Seq assay for AGPAT4 is not available on ENCORE database.





70 RBPs can affect the gene expression of AGPAT4 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
AGPAT4ENSG00000026652.9112.139408.502803.7211015.8588014.69240HepG2AKAP1
AGPAT4ENSG00000026652.986.0940022.969701.906106.284505.17210HepG2AKAP8L
AGPAT4ENSG00000026652.9202.8516019.192103.4017011.459709.94040HepG2CNOT7
AGPAT4ENSG00000026652.994.718408.146703.5393014.5306013.20830HepG2DDX3X
AGPAT4ENSG00000026652.956.7566016.618001.771904.175903.24730HepG2DDX55
AGPAT4ENSG00000026652.931.178507.436802.067703.236802.54660HepG2EIF4A3
AGPAT4ENSG00000026652.947.8904022.341501.099902.150001.41450HepG2EWSR1
AGPAT4ENSG00000026652.950.9550018.008001.500502.281201.36660HepG2FTO
AGPAT4ENSG00000026652.941.360207.497602.463604.787203.89310HepG2FXR1
AGPAT4ENSG00000026652.942.557506.958202.612505.683404.74390HepG2G3BP1
AGPAT4ENSG00000026652.9120.1886017.765602.7580013.9426011.49730HepG2GRSF1
AGPAT4ENSG00000026652.93.7898019.45670-2.360102.192401.62570HepG2HNRNPLL
AGPAT4ENSG00000026652.928.067607.073901.988202.621501.96200HepG2IGF2BP2
AGPAT4ENSG00000026652.933.956006.634202.355602.941301.92770HepG2IGF2BP3
AGPAT4ENSG00000026652.962.363707.543103.047408.209707.17170HepG2MATR3
AGPAT4ENSG00000026652.942.610407.721602.464103.634102.91170HepG2NCBP2
AGPAT4ENSG00000026652.948.3539015.235801.666103.427202.20200HepG2NONO
AGPAT4ENSG00000026652.950.9831012.845001.988704.733803.70980HepG2PRPF8
AGPAT4ENSG00000026652.939.426106.367002.630405.309404.60200HepG2PTBP1
AGPAT4ENSG00000026652.970.9216031.706101.161403.146302.51700HepG2PUF60
AGPAT4ENSG00000026652.912.2304033.65940-1.460502.358201.80240HepG2PUM1
AGPAT4ENSG00000026652.9107.3728033.633601.674607.538206.45480HepG2PUM2
AGPAT4ENSG00000026652.933.504206.897102.280202.647702.03420HepG2QKI
AGPAT4ENSG00000026652.9109.4149017.793802.6203010.050408.76850HepG2RAVER1
AGPAT4ENSG00000026652.9242.2217026.257003.2055035.2006033.75490HepG2RBM22
AGPAT4ENSG00000026652.944.105107.086402.637705.378804.66480HepG2NELFE
AGPAT4ENSG00000026652.925.806506.599001.967302.455101.87010HepG2RECQL
AGPAT4ENSG00000026652.969.9300029.842101.228502.880002.18460HepG2RPLP0
AGPAT4ENSG00000026652.943.4369013.232701.714703.369102.69910HepG2RPS19
AGPAT4ENSG00000026652.932.3644012.708801.348502.034301.35010HepG2RRP9
AGPAT4ENSG00000026652.911.3597029.30680-1.367301.904901.34250HepG2SF3A3
AGPAT4ENSG00000026652.928.815906.630102.119702.953502.34660HepG2SF3B4
AGPAT4ENSG00000026652.9421.2896029.654103.8284073.1206071.44350HepG2SRFBP1
AGPAT4ENSG00000026652.9105.6659020.716502.350609.359607.43910HepG2SRSF3
AGPAT4ENSG00000026652.922.304905.629301.986202.552902.01790HepG2SRSF9
AGPAT4ENSG00000026652.966.9314025.743101.378403.925303.33800HepG2SSB
AGPAT4ENSG00000026652.959.8256021.890501.450403.257201.81050HepG2SUGP2
AGPAT4ENSG00000026652.9128.7081026.334002.2890013.7601012.79080HepG2TIAL1
AGPAT4ENSG00000026652.963.9766021.233701.591103.446302.75080HepG2U2AF1
AGPAT4ENSG00000026652.9411.27460725.12510-0.8181011.9219010.83520K562AGGF1
AGPAT4ENSG00000026652.9617.64950796.75740-0.367402.648701.69280K562AKAP8
AGPAT4ENSG00000026652.9507.30620754.51430-0.572705.236104.32460K562AKAP8L
AGPAT4ENSG00000026652.9477.52170791.64600-0.7293010.110508.23440K562ATP5C1
AGPAT4ENSG00000026652.9321.68510442.61640-0.460402.740901.46680K562CIRBP
AGPAT4ENSG00000026652.91021.09800669.735700.608403.270602.09910K562CNOT7
AGPAT4ENSG00000026652.9309.38020463.01170-0.581705.272203.43420K562DDX27
AGPAT4ENSG00000026652.9886.94820709.711400.321502.920402.25170K562DDX47
AGPAT4ENSG00000026652.9621.06240811.98150-0.386703.754302.71180K562DKC1
AGPAT4ENSG00000026652.9467.22150642.91020-0.460504.138703.28540K562EIF2S2
AGPAT4ENSG00000026652.91163.83560933.665500.317803.150402.15100K562EIF4G2
AGPAT4ENSG00000026652.9184.76490274.67610-0.572002.446201.78750K562G3BP2
AGPAT4ENSG00000026652.9743.02890410.144100.857207.389506.09040K562GPKOW
AGPAT4ENSG00000026652.9513.56480347.150100.564904.085003.37540K562HNRNPC
AGPAT4ENSG00000026652.9449.98930310.036800.537403.496902.20320K562HNRNPF
AGPAT4ENSG00000026652.91001.80680641.366200.643307.736105.87850K562HNRNPL
AGPAT4ENSG00000026652.9304.37430449.96280-0.564003.207002.20010K562HNRNPM
AGPAT4ENSG00000026652.9523.32890800.76750-0.613706.013104.69220K562KIF1C
AGPAT4ENSG00000026652.9332.41550434.03330-0.384802.151901.40580K562MAGOH
AGPAT4ENSG00000026652.9649.84850897.05630-0.465104.282203.10830K562MBNL1
AGPAT4ENSG00000026652.9728.45460508.874200.517406.081604.92030K562MTPAP
AGPAT4ENSG00000026652.9456.12270628.76810-0.463102.333501.53950K562NAA15
AGPAT4ENSG00000026652.9809.36830565.367700.517507.156106.03720K562NSUN2
AGPAT4ENSG00000026652.9875.41600568.101800.623705.159604.02190K562PCBP3
AGPAT4ENSG00000026652.9658.58400435.761500.595705.689604.54330K562POLR2G
AGPAT4ENSG00000026652.9276.94290452.15760-0.707205.083704.06850K562PRPF8
AGPAT4ENSG00000026652.9253.42060421.70970-0.734705.405104.50420K562PTBP1
AGPAT4ENSG00000026652.9422.53580748.35120-0.824608.721507.80660K562PUS1
AGPAT4ENSG00000026652.9472.60180729.08920-0.625507.015906.10000K562RBM15
AGPAT4ENSG00000026652.91056.37370812.433100.378703.143801.42900K562RBM17
AGPAT4ENSG00000026652.9531.50690404.229300.394802.404601.62480K562RBM22
AGPAT4ENSG00000026652.9789.74940557.929000.501205.683004.54560K562SF3A3
AGPAT4ENSG00000026652.9829.04170571.615300.536307.282305.83830K562SRPK2
AGPAT4ENSG00000026652.9487.69890299.379900.703905.039403.74280K562TIAL1
AGPAT4ENSG00000026652.9663.38550463.248800.518003.450502.30700K562UCHL5
AGPAT4ENSG00000026652.9738.15110599.474400.300102.534801.84560K562UPF1
AGPAT4ENSG00000026652.9782.53750533.437800.552702.830601.97520K562WDR43
AGPAT4ENSG00000026652.91235.12110983.827400.328102.575401.74870K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for AGPAT4 is not available on ENCORE database.





3 RBPs can affect the splicing of AGPAT4 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEAGPAT4ENSG00000026652.9chr6-1615866081615867451615751801615753421615872791615874490.324000.000170.00272includedK562AQR
SEAGPAT4ENSG00000026652.9chr6-161586608161586745161575180161575342161587279161587449-0.226000.000330.01587excludedK562HNRNPU
RIAGPAT4ENSG00000026652.9chr6-161574377161575342161574377161574531161575180161575342-0.274000.005910.05875excludedK562UTP18
MXEAGPAT4ENSG00000026652.9chr6-161575180161575342161586608161586745161574377161574531161587279161587449-0.218000.000140.008862includedK562HNRNPU

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for AGPAT4 is not avaliable on ENCORE database.