ZNF678

General Information

Gene Name       : ZNF678
Gene ID             : ENSG00000181450.17
Essential Gene : No

Functions

Localization

Domains (AlphaFold: ZNF678)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878ZNF678ENSG00000181450.172.762.392.58ENCSR000AEF
HepG2ZNF678ENSG00000181450.171.722.872.29ENCSR985KAT
K562ZNF678ENSG00000181450.176.986.146.56ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for ZNF678 is not avaliable on ENCORE database.



Proteins bound to RNA
  • ZNF678 RNA is bound by 6 proteins.  







eCLIP assay for ZNF678 is not avaliable on ENCORE database.





6 proteins are bound to ZNF678 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr1227843391227843481+CDS,intron-Distal4.758635.87202K562UCHL5
chr1227842870227842913+CDS,intron-Distal4.144363.43980K562ZNF622
chr1227842158227842225+CDS,intron-Proximal4.234653.53690K562ZNF622
chr1227842876227842926+CDS,intron-Distal4.432604.42734K562UCHL5
chr1227843365227843402+CDS,intron-Distal4.275883.43980K562ZNF622
chr1227782906227783007+intron-Distal5.5055715.55512K562PTBP1
chr1227766657227766723+intron-Distal4.249733.59909K562EXOSC5
chr1227841677227841731+intron-Distal3.686523.06676K562U2AF2
chr1227765129227765153+intron-Distal4.258273.89085K562EXOSC5
chr1227762656227762676+intron-Distal3.903793.01445K562EXOSC5
chr1227839861227839955+intron-Distal4.301914.72162K562KHSRP
chr1227764785227764851+intron-Distal4.944255.76606K562EXOSC5
chr1227764902227764954+intron-Distal5.325739.68215K562EXOSC5
chr1227764335227764381+intron-Distal4.990816.41304K562EXOSC5
chr1227840107227840174+intron-Distal3.977583.02234K562KHSRP
chr1227763180227763223+intron-Distal4.784656.73640K562EXOSC5
chr1227765599227765638+intron-Distal4.053573.01445K562EXOSC5
chr1227764255227764290+intron-Distal4.261094.48560K562EXOSC5
chr1227786238227786286+intron-Distal4.027105.03657K562PTBP1
chr1227782886227783011+intron-Distal5.6671211.94006HepG2PTBP1
chr1227786484227786532+intron-Distal4.393083.92866K562PTBP1
chr1227763311227763372+intron-Distal6.2995018.99740K562EXOSC5
chr1227763829227763876+intron-Distal5.7667113.32155K562EXOSC5
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for ZNF678 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for ZNF678 is not available on ENCORE database.

  • 70 RBPs can affect the levels of ZNF678.  








The Knockdown/knockout RNA-Seq assay for ZNF678 is not available on ENCORE database.





70 RBPs can affect the gene expression of ZNF678 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
ZNF678ENSG00000181450.13261.37340192.165600.443702.316901.75170HepG2ACO1
ZNF678ENSG00000181450.13554.67210205.685901.4311012.2688011.22770HepG2AKAP1
ZNF678ENSG00000181450.13170.44990323.44380-0.924208.412307.32350HepG2AUH
ZNF678ENSG00000181450.1379.61400168.33140-1.080204.218803.06130HepG2BCCIP
ZNF678ENSG00000181450.13310.86130156.952900.985803.374102.52310HepG2CNOT7
ZNF678ENSG00000181450.13102.09980176.40130-0.788903.935003.10850HepG2DNAJC21
ZNF678ENSG00000181450.1382.06850174.83000-1.091107.239306.25420HepG2DNAJC2
ZNF678ENSG00000181450.13298.17830179.883700.729003.899703.14500HepG2EIF4A3
ZNF678ENSG00000181450.13380.11620175.068801.118407.312106.22350HepG2EIF4B
ZNF678ENSG00000181450.13687.26750371.348400.8880013.4627012.30150HepG2ETF1
ZNF678ENSG00000181450.13268.24740168.316700.672303.358602.62960HepG2G3BP1
ZNF678ENSG00000181450.13119.64160196.77960-0.717903.915703.20600HepG2HNRNPU
ZNF678ENSG00000181450.13127.76720193.96680-0.602302.766602.04240HepG2IGF2BP1
ZNF678ENSG00000181450.13269.12840181.441900.568702.550301.91900HepG2MAGOH
ZNF678ENSG00000181450.13268.23660158.786300.756304.181003.19630HepG2MSI2
ZNF678ENSG00000181450.1382.01740133.33780-0.701102.563601.39460HepG2NAA15
ZNF678ENSG00000181450.13105.64080158.76000-0.587702.353601.78420HepG2PCBP1
ZNF678ENSG00000181450.13246.64310161.543000.610403.301102.71380HepG2PTBP1
ZNF678ENSG00000181450.13278.51510195.732000.508802.983902.35040HepG2PUS1
ZNF678ENSG00000181450.13591.04470310.380300.9291012.1652011.23750HepG2RBM22
ZNF678ENSG00000181450.13264.40340158.784300.735604.229803.41080HepG2RBM25
ZNF678ENSG00000181450.13228.01530167.441500.445401.851901.33310HepG2RECQL
ZNF678ENSG00000181450.13212.42580126.322800.749703.157002.32470HepG2RRP9
ZNF678ENSG00000181450.13320.70310197.497700.699303.126101.50450HepG2RTF1
ZNF678ENSG00000181450.13282.08770202.060100.481302.389501.80260HepG2SRSF5
ZNF678ENSG00000181450.13308.31740229.816900.423802.078801.52460HepG2SUCLG1
ZNF678ENSG00000181450.1384.89850132.47890-0.642002.221301.37530HepG2SUPT6H
ZNF678ENSG00000181450.13272.84460157.790900.790005.270004.53740HepG2TAF15
ZNF678ENSG00000181450.13133.58090261.97780-0.971702.292201.62280HepG2TARDBP
ZNF678ENSG00000181450.13102.58680191.22520-0.898404.914404.28720HepG2TIAL1
ZNF678ENSG00000181450.13113.19000192.91630-0.769204.410803.73210HepG2TRIM56
ZNF678ENSG00000181450.13407.81340167.839701.2807011.3240010.03060HepG2U2AF1
ZNF678ENSG00000181450.1344.8125097.33480-1.119103.701502.82480HepG2UCHL5
ZNF678ENSG00000181450.1365.29190150.89210-1.208503.859202.66130HepG2UPF2
ZNF678ENSG00000181450.1374.17640162.18840-1.128604.582203.65790HepG2XRN2
ZNF678ENSG00000181450.13285.55090216.881800.396702.147901.64840HepG2ZNF622
ZNF678ENSG00000181450.131021.699901285.99640-0.331902.118301.54330K562AKAP8L
ZNF678ENSG00000181450.13445.58190579.25360-0.378502.563401.31580K562BCCIP
ZNF678ENSG00000181450.131149.305101477.00920-0.361903.700702.30880K562CCDC124
ZNF678ENSG00000181450.13814.809101053.91830-0.371203.738302.44210K562CPEB4
ZNF678ENSG00000181450.132123.056301553.379000.450605.601904.21190K562CELF1
ZNF678ENSG00000181450.13898.673401090.46720-0.279102.650602.01090K562DDX47
ZNF678ENSG00000181450.13484.55960626.25300-0.370102.848302.12040K562EIF2S2
ZNF678ENSG00000181450.13442.01700700.27750-0.663807.319406.03640K562EIF3G
ZNF678ENSG00000181450.13490.92680648.21940-0.401002.580501.76280K562FIP1L1
ZNF678ENSG00000181450.13505.13440835.17680-0.725405.773304.94590K562FXR1
ZNF678ENSG00000181450.131259.23440887.956400.503903.337202.54650K562G3BP2
ZNF678ENSG00000181450.13478.14180834.58110-0.803609.770908.32680K562GRSF1
ZNF678ENSG00000181450.13674.29480985.50730-0.547505.775804.19600K562HNRNPL
ZNF678ENSG00000181450.13290.18020533.18290-0.877707.185305.57170K562HNRNPM
ZNF678ENSG00000181450.13668.11330878.82950-0.395502.762201.96770K562HSPD1
ZNF678ENSG00000181450.13684.62240897.94990-0.391303.078301.80510K562IGF2BP3
ZNF678ENSG00000181450.13704.68070926.15870-0.394303.370902.33900K562MATR3
ZNF678ENSG00000181450.13318.29820604.94170-0.926409.509507.81740K562METAP2
ZNF678ENSG00000181450.13511.83860725.35080-0.503005.105204.02990K562MTPAP
ZNF678ENSG00000181450.13439.62210619.04580-0.493803.045502.17350K562PCBP3
ZNF678ENSG00000181450.13352.98290474.84370-0.427902.716301.92310K562POLR2G
ZNF678ENSG00000181450.13456.64120735.87630-0.688406.640905.27220K562PPIG
ZNF678ENSG00000181450.13499.13330901.58070-0.8530012.8940011.51630K562PTBP1
ZNF678ENSG00000181450.131739.821201378.213600.336002.373401.61880K562PUF60
ZNF678ENSG00000181450.13794.855101275.44760-0.682208.441307.54010K562PUS1
ZNF678ENSG00000181450.13471.39080864.67910-0.8752011.431509.55560K562RBM22
ZNF678ENSG00000181450.13601.14700842.76640-0.487403.747202.04630K562RBM34
ZNF678ENSG00000181450.13573.79820909.89650-0.665206.592404.82630K562NELFE
ZNF678ENSG00000181450.13506.46900958.05430-0.9196010.375808.30320K562RPS3
ZNF678ENSG00000181450.131075.45190814.745200.400403.109702.12310K562SRPK2
ZNF678ENSG00000181450.13382.78600883.81460-1.2072021.5527019.59590K562SRSF1
ZNF678ENSG00000181450.13642.85800925.01140-0.525004.310502.94980K562SRSF4
ZNF678ENSG00000181450.131035.96920777.866600.413302.893601.61160K562STAU1
ZNF678ENSG00000181450.13692.06420862.87810-0.318302.346701.60030K562TIA1
ZNF678ENSG00000181450.13249.30560402.67840-0.691704.272903.09020K562TIAL1
ZNF678ENSG00000181450.13658.34680846.56100-0.362802.519801.48730K562TRA2A
ZNF678ENSG00000181450.131269.87820860.951900.560603.854202.52070K562U2AF1
ZNF678ENSG00000181450.131397.41040889.099500.6522010.169608.63050K562U2AF2
ZNF678ENSG00000181450.13655.46700854.54860-0.382604.009703.15940K562UPF1
ZNF678ENSG00000181450.13932.68210731.210800.351002.711701.84370K562WDR3
ZNF678ENSG00000181450.13336.34960480.42080-0.514303.164501.83900K562XRN2
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for ZNF678 is not available on ENCORE database.





5 RBPs can affect the splicing of ZNF678 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEZNF678ENSG00000181450.13chr1+227838656227838777227834244227834371227842036227842054-0.257000.001090.03372excludedK562AKAP8L
SEZNF678ENSG00000181450.13chr1+2278342442278343712277512432277514252278420362278424690.214000.000330.06149includedK562FXR2
SEZNF678ENSG00000181450.13chr1+2278386562278387772278342442278343712278420362278420540.312000.003740.05747includedK562U2AF2
SEZNF678ENSG00000181450.13chr1+227838656227838777227834244227834371227842036227842054-0.314000.000020.00138excludedK562RBM15
SEZNF678ENSG00000181450.13chr1+227838656227838777227834244227834371227842036227842054-0.267000.002920.06257excludedK562AGGF1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for ZNF678 is not avaliable on ENCORE database.