ZNF397

General Information

Gene Name       : ZNF397
Gene ID             : ENSG00000186812.12
Essential Gene : No

Functions

Localization

Domains (AlphaFold: ZNF397)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878ZNF397ENSG00000186812.1214.708.5011.60ENCSR000AEF
HepG2ZNF397ENSG00000186812.124.957.506.22ENCSR985KAT
K562ZNF397ENSG00000186812.1214.3316.2815.30ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for ZNF397 is not avaliable on ENCORE database.



Proteins bound to RNA
  • ZNF397 RNA is bound by 4 proteins.  







eCLIP assay for ZNF397 is not avaliable on ENCORE database.





4 proteins are bound to ZNF397 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr183282638832826424+3'-UTR,intron-Distal3.349213.42164K562UPF1
chr183282626832826350+3'-UTR,CDS,intron-Distal4.048438.27513K562PUM2
chr183282673032826769+3'-UTR,intron-Distal3.190133.06830K562UPF1
chr183282261832822647+CDS,intron-Distal3.597707.19516K562RBM15
chr183282326332823315+CDS,intron-Proximal4.699633.62536K562AQR
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for ZNF397 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for ZNF397 is not available on ENCORE database.

  • 75 RBPs can affect the levels of ZNF397.  








The Knockdown/knockout RNA-Seq assay for ZNF397 is not available on ENCORE database.





75 RBPs can affect the gene expression of ZNF397 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
ZNF397ENSG00000186812.8411.80790235.599500.805503.895103.28000HepG2AKAP1
ZNF397ENSG00000186812.8311.34540170.303500.870306.393205.28300HepG2CALR
ZNF397ENSG00000186812.8460.96300292.591800.655703.118902.30360HepG2CNOT7
ZNF397ENSG00000186812.8450.84960264.679800.768305.917304.94570HepG2CPSF6
ZNF397ENSG00000186812.8294.06090186.354200.658003.191502.55710HepG2EIF2S1
ZNF397ENSG00000186812.8415.17480205.921701.011507.782206.71240HepG2EIF4A3
ZNF397ENSG00000186812.8364.88190277.897900.392802.175001.41810HepG2EIF4G1
ZNF397ENSG00000186812.8208.01880112.822800.882604.798303.77800HepG2FUBP3
ZNF397ENSG00000186812.8198.85060300.04440-0.593502.677502.04610HepG2GPKOW
ZNF397ENSG00000186812.8170.67620270.87030-0.666302.843301.71470HepG2GRSF1
ZNF397ENSG00000186812.8329.58030212.179900.635203.362502.60450HepG2HNRNPC
ZNF397ENSG00000186812.8281.95360195.267000.529902.317101.67440HepG2HNRNPK
ZNF397ENSG00000186812.8343.73050195.924100.810905.128204.23380HepG2IGF2BP2
ZNF397ENSG00000186812.8307.21210197.089000.640302.812601.80300HepG2KHSRP
ZNF397ENSG00000186812.8383.14140207.904400.881906.087905.12320HepG2MAGOH
ZNF397ENSG00000186812.8369.48610213.973300.788004.820503.99770HepG2NCBP2
ZNF397ENSG00000186812.8296.49320190.517600.638003.238602.45970HepG2PABPC4
ZNF397ENSG00000186812.8295.70320185.029700.676304.940204.16590HepG2PCBP1
ZNF397ENSG00000186812.8251.49000167.154000.589202.252801.52090HepG2PRPF8
ZNF397ENSG00000186812.8365.63580188.298400.957309.669408.76860HepG2PTBP1
ZNF397ENSG00000186812.8363.70460283.043100.361602.198701.65760HepG2PUM1
ZNF397ENSG00000186812.8460.47080203.881301.1753014.2172012.95790HepG2QKI
ZNF397ENSG00000186812.8588.65670387.322500.603805.575004.90450HepG2RBM22
ZNF397ENSG00000186812.8264.38340185.054500.514602.579201.92500HepG2RBM25
ZNF397ENSG00000186812.8336.13630209.538300.681704.911904.22680HepG2NELFE
ZNF397ENSG00000186812.8331.76490195.192200.765206.094105.22790HepG2RECQL
ZNF397ENSG00000186812.8246.57040165.345000.576402.067301.37860HepG2RRP9
ZNF397ENSG00000186812.8309.78160196.000400.660304.512803.78570HepG2SF3B4
ZNF397ENSG00000186812.8373.34760204.599400.867606.079005.44490HepG2SRSF1
ZNF397ENSG00000186812.8428.69290304.948400.491302.198901.31860HepG2SRSF3
ZNF397ENSG00000186812.8345.34400263.261000.391402.184901.62160HepG2SRSF5
ZNF397ENSG00000186812.8233.71170166.467400.489402.630002.08850HepG2SRSF9
ZNF397ENSG00000186812.8386.23970299.402400.367302.114901.55750HepG2SUCLG1
ZNF397ENSG00000186812.8432.55680183.950001.2335015.9686014.78620HepG2TAF15
ZNF397ENSG00000186812.8276.90810168.973900.712504.754903.66900HepG2TIA1
ZNF397ENSG00000186812.8152.76730206.64210-0.435801.946501.45740HepG2TRIM56
ZNF397ENSG00000186812.8282.07790200.807700.490201.829101.30770HepG2U2AF1
ZNF397ENSG00000186812.8442.15170275.720300.681203.618402.65360HepG2UBE2L3
ZNF397ENSG00000186812.883.77070127.44370-0.605301.971401.33090HepG2UCHL5
ZNF397ENSG00000186812.8390.78320230.068200.764206.981906.10440HepG2UTP3
ZNF397ENSG00000186812.8555.57300931.38570-0.7454011.9827010.89320K562AGGF1
ZNF397ENSG00000186812.8758.703901023.44960-0.431803.618702.45660K562AKAP8
ZNF397ENSG00000186812.8609.57800969.14840-0.668904.309703.48950K562AKAP8L
ZNF397ENSG00000186812.8816.463801113.05890-0.447104.684103.11740K562CCDC124
ZNF397ENSG00000186812.8763.892601043.05870-0.449405.056304.21180K562DDX47
ZNF397ENSG00000186812.8790.712901042.87690-0.399304.203103.09220K562DKC1
ZNF397ENSG00000186812.8430.65120681.76390-0.662808.088606.95710K562EIF2S2
ZNF397ENSG00000186812.8363.06650638.32140-0.8140010.403508.85120K562EIF3G
ZNF397ENSG00000186812.8478.83830623.31620-0.380402.432301.63750K562FIP1L1
ZNF397ENSG00000186812.8406.37920552.05290-0.442002.690001.84810K562FMR1
ZNF397ENSG00000186812.8507.79150651.81780-0.360202.788402.18110K562FXR1
ZNF397ENSG00000186812.8613.64970908.48820-0.566105.623504.54240K562GRSF1
ZNF397ENSG00000186812.8383.72600512.65940-0.417902.136401.32480K562HNRNPM
ZNF397ENSG00000186812.8544.40710845.12250-0.634506.216805.03620K562HSPD1
ZNF397ENSG00000186812.8646.93600860.99540-0.412402.319601.40400K562IGF2BP2
ZNF397ENSG00000186812.8596.01060875.78890-0.555205.461803.68570K562IGF2BP3
ZNF397ENSG00000186812.8756.369701028.51080-0.443403.800102.81150K562KIF1C
ZNF397ENSG00000186812.8648.54350984.53620-0.602205.358803.69730K562MAK16
ZNF397ENSG00000186812.8673.33340903.15030-0.423603.774602.68290K562MATR3
ZNF397ENSG00000186812.8800.327301152.19160-0.525705.631904.24340K562MBNL1
ZNF397ENSG00000186812.8367.34950505.56900-0.460803.016702.10040K562METAP2
ZNF397ENSG00000186812.8600.72610807.60270-0.426902.162901.40470K562NAA15
ZNF397ENSG00000186812.8335.74690529.29670-0.656704.731102.90780K562NONO
ZNF397ENSG00000186812.8495.25690758.35330-0.614702.358201.45820K562PABPN1
ZNF397ENSG00000186812.8517.11250707.54820-0.452403.275002.36890K562PPIG
ZNF397ENSG00000186812.8398.92830522.58720-0.389502.062401.41070K562PRPF8
ZNF397ENSG00000186812.8488.03430879.22880-0.8493012.6663011.29990K562PTBP1
ZNF397ENSG00000186812.81292.505401606.56950-0.313803.566902.47720K562PUM2
ZNF397ENSG00000186812.8385.51530961.13370-1.3179021.6055020.11410K562PUS1
ZNF397ENSG00000186812.8502.01140936.47630-0.8995014.7860013.39970K562RBM15
ZNF397ENSG00000186812.8611.21880843.12940-0.464103.816002.81730K562RBM22
ZNF397ENSG00000186812.8327.16840532.26820-0.702104.900403.81180K562RPS19
ZNF397ENSG00000186812.8429.50190619.14470-0.527602.674601.69000K562RPS3
ZNF397ENSG00000186812.8946.19650797.007100.247402.021401.31670K562SF3A3
ZNF397ENSG00000186812.8508.60850845.82790-0.733803.048001.64990K562SFPQ
ZNF397ENSG00000186812.8268.16670410.55240-0.614403.843702.57310K562SRFBP1
ZNF397ENSG00000186812.8802.18010628.779700.351302.885701.69030K562SRSF7
ZNF397ENSG00000186812.8686.65900872.34950-0.345302.189701.55590K562TARDBP
ZNF397ENSG00000186812.8630.11700841.47330-0.417303.555002.60940K562TIA1
ZNF397ENSG00000186812.8951.65440677.048100.491103.552202.27770K562U2AF1
ZNF397ENSG00000186812.81068.85150699.050900.612508.235006.83390K562U2AF2
ZNF397ENSG00000186812.8407.50660545.32170-0.420302.466501.34670K562XRN2
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for ZNF397 is not available on ENCORE database.





7 RBPs can affect the splicing of ZNF397 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEZNF397ENSG00000186812.8chr18+328223543282284832821000328210733282311532823349-0.272000.000460.01100excludedK562SRSF1
SEZNF397ENSG00000186812.8chr18+328252253282531532823115328232573283419532834366-0.325000.001170.02389excludedK562SRSF1
SEZNF397ENSG00000186812.8chr18+328215653282165432821018328210733282235432822848-0.204000.005620.07958excludedK562U2AF2
SEZNF397ENSG00000186812.8chr18+3282156532821654328210183282107332822354328228480.306000.000070.06162includedK562TRA2A
A5SSZNF397ENSG00000186812.8chr18+3282311532823349328231153282325732825225328253150.206000.000210.03303longerK562PTBP1
A5SSZNF397ENSG00000186812.8chr18+3282311532823349328231153282325732825225328253150.396000.000000.00142longerK562HNRNPU
A5SSZNF397ENSG00000186812.8chr18+328231153282334932823115328232573282522532825315-0.087000.000060.03774shorterK562LARP4
A5SSZNF397ENSG00000186812.8chr18+3282311532823349328231153282325732825225328271530.183000.000530.03374longerK562SRSF1
A5SSZNF397ENSG00000186812.8chr18+328231153282334932823115328232573282522532825315-0.204000.000190.07219shorterK562TAF15

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for ZNF397 is not avaliable on ENCORE database.