YTHDC1

General Information

Gene Name       : YTHDC1
Gene ID             : ENSG00000083896.12
Essential Gene : Yes

Functions

Localization

Domains (AlphaFold: YTHDC1)


Antibody Validation

 View validation images for all YTHDC1 antibodies

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878YTHDC1ENSG00000083896.1263.5556.6160.08ENCSR000AEF
HepG2YTHDC1ENSG00000083896.1238.9351.0945.01ENCSR985KAT
K562YTHDC1ENSG00000083896.1241.3543.9842.66ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  
  GeneName    Antibody_DCC_ID    Product_ID    Lot_ID    Phosphate    HepG2 Primary Validation    K562 Primary Validation    HepG2 Secondary Validation    K562 Secondary Validation  
YTHDC177422S1Submitted, ENCORE2
YTHDC181504S1Submitted, ENCORE2


  KD RNA-Seq  
  GeneName    Cell_Line    Method    Exp_ID    Control_ID    Sample_reps    Control_reps    KD%    Status    Project    Note  
YTHDC1K562CRISPRBGKcLV37-63,BGKcLV37-64BGKcLV37-1,BGKcLV37-20.0,0.0NotSatisfiedENCORE2
YTHDC1K562CRISPRBGKcLV44-89,BGKcLV44-90BGKcLV44-1,BGKcLV44-2NotSatisfiedENCORE2
YTHDC1K562CRISPRBGKcLV46-111,BGKcLV46-112BGKcLV46-1,BGKcLV46-270.1,90.4ExperimentedENCORE2
YTHDC1HepG2CRISPRBGHcLV36-61,BGHcLV36-62BGHcLV36-1,BGHcLV36-2NO CLEAR BAND ON THE POSITION,NotSatisfiedENCORE2
YTHDC1HepG2CRISPRBGHcLV45-83,BGHcLV45-84BGHcLV45-1,BGHcLV45-2no clear band on the position,NotSatisfiedENCORE2
YTHDC1HepG2CRISPRBGHcLV45-85,BGHcLV45-86BGHcLV45-1,BGHcLV45-2no clear band on the position,NotSatisfiedENCORE2


  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela
YTHDC1Product_ID: 77422S
Lot_ID: 1
Source: Cell Signaling Technology
Target Name: YTHDC1-human		 CST_77422S_1_YTHDC1.png<br>Caption: IP-WB analysis of 77422S whole cell lysate using the YTHDC1 specific antibody, 77422S. Lanes 1 and 2 are 2.5% of five million whole cell lysate input and 50% of IP enrichment, respectively, using a normal IgG antibody. Lane 3 is 50% of IP enrichment from five million whole cell lysate using the YTHDC1-specific antibody, 77422S. The same antibody was used to detect protein levels via Western blot. This antibody passes preliminary validation and will be further pursued for secondary validation. *NOTE* Protein sizes are taken from Genecards.org and are only estimates based on sequence. Actual protein size may differ based on protein characteristics and electrophoresis method used.
YTHDC1Product_ID: 81504S
Lot_ID: 1
Source: Cell Signaling Technology
Target Name: YTHDC1-human		 CST_81504S_1_YTHDC1.png<br>Caption: IP-WB analysis of 81504S whole cell lysate using the YTHDC1 specific antibody, 81504S. Lanes 1 and 2 are 2.5% of five million whole cell lysate input and 50% of IP enrichment, respectively, using a normal IgG antibody. Lane 3 is 50% of IP enrichment from five million whole cell lysate using the YTHDC1-specific antibody, 81504S. The same antibody was used to detect protein levels via Western blot. This antibody passes preliminary validation and will be further pursued for secondary validation. *NOTE* Protein sizes are taken from Genecards.org and are only estimates based on sequence. Actual protein size may differ based on protein characteristics and electrophoresis method used.








RNA Targets

  • eCLIP assay for YTHDC1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • YTHDC1 RNA is bound by 30 proteins.  







eCLIP assay for YTHDC1 is not avaliable on ENCORE database.





30 proteins are bound to YTHDC1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr46917907669179191-3'-UTR,intron-Distal3.269316.00918K562FAM120A
chr46917942569179488-3'-UTR,intron-Distal3.192026.84558K562ZC3H11A
chr46920400669204064-3'-UTR,5'-UTR,CDS,intron-Distal3.192646.29223K562UCHL5
chr46917980969179870-3'-UTR,CDS,intron-Distal3.346478.01687K562UCHL5
chr46917955369179674-3'-UTR,intron-Distal4.3602310.51368K562IGF2BP1
chr46917916769179206-3'-UTR,intron-Distal5.776177.41065K562ZC3H11A
chr46917908869179155-3'-UTR,intron-Distal5.047926.36487HepG2ZC3H11A
chr46918189269181992-3'-UTR,CDS,intron-Distal,intron-Proximal3.459326.18396K562KHSRP
chr46921553969215602-5'-UTR,intron-Distal,intron-Proximal4.568028.92108K562UCHL5
chr46921567769215787-5'-UTR,intron-Distal,intron-Proximal3.107616.00186HepG2GRWD1
chr46921567569215744-5'-UTR,intron-Distal3.6795620.50360K562ZNF622
chr46921563369215685-5'-UTR,intron-Distal4.313175.05409HepG2NCBP2
chr46921571969215766-5'-UTR,intron-Distal,intron-Proximal4.557885.85529K562RBM15
chr46921565669215784-5'-UTR,intron-Distal,intron-Proximal3.7713518.63676K562UCHL5
chr46919851169198556-CDS,intron-Distal,intron-Proximal3.421006.81726HepG2GRWD1
chr46918423569184297-CDS,intron-Distal,intron-Proximal3.277395.45291K562EFTUD2
chr46920328969203369-CDS,intron-Distal,intron-Proximal4.1395327.48037K562UCHL5
chr46920277269202912-CDS,intron-Distal5.067806.95426HepG2AGGF1
chr46920278169202839-CDS,intron-Distal4.1652312.13764K562TRA2A
chr46919851169198543-CDS,intron-Distal,intron-Proximal3.309687.66871HepG2BCLAF1
chr46920308569203155-CDS,intron-Distal3.097295.12345HepG2GRWD1
chr46918985769189937-CDS,intron-Distal3.278925.57447HepG2GRWD1
chr46919575969195837-CDS,intron-Distal,intron-Proximal3.225095.99957HepG2BCLAF1
chr46920273569202781-CDS,intron-Distal,intron-Proximal4.659858.80468K562TRA2A
chr46920329469203348-CDS,intron-Distal3.801785.74979HepG2GRWD1
chr46918211769182175-CDS,intron-Distal,intron-Proximal3.266577.66226HepG2U2AF2
chr46920278369202958-CDS,intron-Distal3.9164621.47147K562CPSF6
chr46920313069203153-CDS,intron-Distal4.349115.85660K562TRA2A
chr46918212969182166-CDS,intron-Distal3.152283.85127HepG2GRWD1
chr46919904269199067-CDS,intron-Distal4.1619013.54973K562UCHL5
chr46918444769184496-CDS,intron-Distal,intron-Proximal3.919425.16342K562SF3B4
chr46919851069198550-CDS,intron-Distal,intron-Proximal3.6695212.74321K562ZNF622
chr46920283969202898-CDS,intron-Distal3.514956.30738K562GPKOW
chr46920295769203097-CDS,intron-Distal5.1891034.45295K562TRA2A
chr46920336969203454-CDS,intron-Distal,intron-Proximal3.4136022.67401K562UCHL5
chr46918588769185941-CDS,intron-Distal,intron-Proximal3.8469611.39545HepG2U2AF2
chr46920274469202834-CDS,intron-Distal,intron-Proximal6.0527045.99397K562UCHL5
chr46920330369203369-CDS,intron-Distal3.371644.35304HepG2AGGF1
chr46918204369182125-CDS,intron-Distal3.034028.70189K562ZNF622
chr46919853969198595-CDS,intron-Distal,intron-Proximal3.693514.90219HepG2AQR
chr46920279569202890-CDS,intron-Distal3.192758.07998HepG2PPIG
chr46919902469199058-CDS,intron-Distal,intron-Proximal4.267183.79199HepG2PPIG
chr46918429769184495-CDS,intron-Distal,intron-Proximal4.1904320.38390K562EFTUD2
chr46920277369202898-CDS,intron-Distal4.5789011.97936HepG2ZNF800
chr46919851169198603-CDS,intron-Distal,intron-Proximal3.762966.94346HepG2BUD13
chr46919902469199068-CDS,intron-Distal,intron-Proximal3.024665.00905HepG2BCLAF1
chr46919789069197915-CDS,intron-Distal4.791047.92891HepG2GRWD1
chr46919598369196037-CDS,intron-Distal,intron-Proximal5.028596.83215HepG2U2AF2
chr46920329769203374-CDS,intron-Distal3.7663319.98305K562ZNF622
chr46918452469184587-CDS,intron-Distal,intron-Proximal4.516614.20763HepG2U2AF2
chr46920276169202905-CDS,intron-Distal5.0237212.55571K562MTPAP
chr46919571269195746-CDS,intron-Distal,intron-Proximal5.187848.07539HepG2BCLAF1
chr46919902469199042-CDS,intron-Distal,intron-Proximal4.2643110.26568K562UCHL5
chr46918590169185980-CDS,intron-Distal,intron-Proximal3.326938.65261HepG2SF3A3
chr46918454269184597-CDS,intron-Distal,intron-Proximal3.867475.90528HepG2AQR
chr46919568069195741-CDS,intron-Distal,intron-Proximal4.190158.25843K562PRPF8
chr46920273769202796-CDS,intron-Distal,intron-Proximal4.7732620.51156K562ZNF622
chr46920281769202917-CDS,intron-Distal3.787865.41973HepG2G3BP1
chr46920283269202933-CDS,intron-Distal4.6980022.66961K562SRSF1
chr46918992969189993-CDS,intron-Distal,intron-Proximal3.9384813.33055K562SF3B4
chr46920283469202898-CDS,intron-Distal6.0535440.37855K562UCHL5
chr46918583269185909-CDS,intron-Distal,intron-Proximal3.975806.20417HepG2BUD13
chr46920311169203170-CDS,intron-Distal,intron-Proximal3.3489310.22284K562ZNF622
chr46918204569182109-CDS,intron-Distal4.1971611.93878K562UCHL5
chr46920279669202897-CDS,intron-Distal7.5482237.53823K562ZNF622
chr46918588669185938-CDS,intron-Distal,intron-Proximal4.161954.11564K562U2AF2
chr46918857269188626-CDS,intron-Distal4.554934.97342HepG2PPIG
chr46920283569202891-CDS,intron-Distal3.778818.28719HepG2BUD13
chr46920283169202924-CDS,intron-Distal4.2103113.02217K562RBM15
chr46918587669185952-CDS,intron-Distal,intron-Proximal3.241273.90373HepG2AQR
chr46918984369189895-CDS,intron-Distal,intron-Proximal4.190533.25843K562SRSF1
chr46920279769202890-CDS,intron-Distal5.1334420.89795HepG2BCLAF1
chr46918854769188622-CDS,intron-Distal5.3839812.10845HepG2GRWD1
chr46920280569202908-CDS,intron-Distal3.7225121.46802K562BUD13
chr46920292469203037-CDS,intron-Distal5.597704.39935HepG2TRA2A
chr46920336169203420-CDS,intron-Distal,intron-Proximal3.7014810.10467HepG2BCLAF1
chr46918842969188506-CDS,intron-Distal,intron-Proximal3.461599.25770HepG2BCLAF1
chr46917997469180023-CDS,intron-Distal3.469145.76104HepG2BCLAF1
chr46920275169202904-CDS,intron-Distal3.086874.60395HepG2PRPF4
chr46920278969202830-CDS,intron-Distal3.028214.04117HepG2BUD13
chr46918424969184297-CDS,intron-Distal4.417244.62947HepG2AQR
chr46920279469202913-CDS,intron-Distal3.3482212.80228K562GRWD1
chr46918440369184463-CDS,intron-Distal,intron-Proximal4.623845.83809K562U2AF2
chr46920277169202923-CDS,intron-Distal4.032069.28840K562AGGF1
chr46919784469197890-CDS,intron-Distal3.175057.47194HepG2GRWD1
chr46920275069202780-CDS,intron-Distal3.427915.56491HepG2BCLAF1
chr46917997269180095-CDS,intron-Distal3.338443.21655K562U2AF2
chr46920275369202840-CDS,intron-Distal3.875659.63482HepG2GRWD1
chr46919789669197915-CDS,intron-Distal3.964128.49795HepG2BCLAF1
chr46919781869197896-CDS,intron-Distal,intron-Proximal4.2115018.28673HepG2BCLAF1
chr46919782069197907-CDS,intron-Distal,intron-Proximal3.240345.18255HepG2HLTF
chr46920276069202843-CDS,intron-Distal3.698723.37921HepG2UCHL5
chr46919788269197915-CDS,intron-Distal3.257668.82455K562ZNF622
chr46920281269202953-CDS,intron-Distal5.8240215.72474HepG2SRSF1
chr46920278469202832-CDS,intron-Distal3.860104.65185K562SRSF1
chr46920293369203040-CDS,intron-Distal5.6753413.05526K562SRSF1
chr46918436669184471-CDS,intron-Distal,intron-Proximal3.413377.39418HepG2EFTUD2
chr46920329469203361-CDS,intron-Distal3.9922113.65695HepG2BCLAF1
chr46920276069202793-CDS,intron-Distal3.074973.47139K562GRWD1
chr46920337469203457-CDS,intron-Distal,intron-Proximal3.5827922.18013K562ZNF622
chr46920283769202920-CDS,intron-Distal4.553975.52950HepG2TRA2A
chr46920268669202748-CDS,intron-Distal,intron-Proximal3.421437.70675K562AQR
chr46920282169202905-CDS,intron-Distal4.436355.18185HepG2FXR2
chr46919781969197893-CDS,intron-Distal,intron-Proximal3.166725.71737K562GRWD1
chr46920337269203420-CDS,intron-Distal,intron-Proximal3.738787.77892K562TRA2A
chr46920330169203381-CDS,intron-Distal3.500873.48848HepG2FXR2
chr46919575969195838-CDS,intron-Distal,intron-Proximal3.097245.93420HepG2GRWD1
chr46920273769202824-CDS,intron-Distal,intron-Proximal6.2728319.97196K562RBM15
chr46920283969202957-CDS,intron-Distal5.9686529.90511K562TRA2A
chr46920310269203160-CDS,intron-Distal3.1173610.21845K562UCHL5
chr46918845269188535-CDS,intron-Distal,intron-Proximal3.9765910.37952HepG2GRWD1
chr46918002669180112-CDS,intron-Distal4.520059.01206HepG2U2AF2
chr46918207369182164-CDS,intron-Distal3.422863.36034K562SRSF1
chr46918449669184565-CDS,intron-Distal,intron-Proximal4.044945.34978HepG2PRPF8
chr46917994469179996-CDS,intron-Distal4.562484.08604HepG2PPIG
chr46918853869188619-CDS,intron-Distal3.0405215.49765K562UCHL5
chr46919565869195776-CDS,intron-Distal,intron-Proximal5.184999.43475HepG2PRPF8
chr46920275069202805-CDS,intron-Distal3.8958512.55536K562BUD13
chr46920266169202722-intron-Distal,intron-Proximal3.648105.36888K562KHSRP
chr46921529969215360-intron-Distal4.285138.66070HepG2PRPF4
chr46920683969206896-intron-Distal3.818734.72639K562KHSRP
chr46919618969196223-intron-Distal3.709314.36528HepG2U2AF2
chr46919398569194048-intron-Distal3.230683.78824HepG2KHSRP
chr46918947869189597-intron-Distal3.7034610.37441K562KHSRP
chr46918696569187045-intron-Distal3.311387.89500K562KHSRP
chr46919890269198983-intron-Distal,intron-Proximal4.7683810.30697K562AQR
chr46918218869182214-intron-Distal,intron-Proximal4.700713.42835K562SF3B4
chr46920645469206537-intron-Distal3.017065.23331K562KHSRP
chr46920387569203966-intron-Distal,intron-Proximal4.270074.31512K562KHSRP
chr46921522269215285-intron-Distal3.430983.76553K562PRPF8
chr46918834369188394-intron-Distal,intron-Proximal3.648036.79943K562RBM15
chr46921529669215354-intron-Distal3.009483.14777HepG2GTF2F1
chr46919911569199166-intron-Distal,intron-Proximal4.4981911.37858K562SF3B4
chr46918598169186039-intron-Distal,intron-Proximal3.356145.62143K562KHSRP
chr46918802869188097-intron-Distal4.466597.29386HepG2U2AF2
chr46918949369189587-intron-Distal4.052346.62875HepG2KHSRP
chr46920869169208832-intron-Distal3.725885.96041K562KHSRP
chr46919564169195680-intron-Distal,intron-Proximal3.712104.35635K562PRPF8
chr46920693469207092-intron-Distal3.7506313.91743K562KHSRP
chr46921525569215361-intron-Distal6.2941124.13081HepG2EFTUD2
chr46918220969182258-intron-Distal,intron-Proximal4.381263.66668K562KHSRP
chr46921527069215351-intron-Distal4.679905.84281K562GTF2F1
chr46920672769206762-intron-Distal4.123057.05443K562KHSRP
chr46920813869208268-intron-Distal4.132517.22994K562KHSRP
chr46920668569206727-intron-Distal3.513897.01633K562KHSRP
chr46920261669202714-intron-Distal,intron-Proximal3.619494.79415HepG2KHSRP
chr46921522169215355-intron-Distal6.7898322.14902K562EFTUD2
chr46920709269207146-intron-Distal3.185104.74253K562KHSRP
chr46920639969206448-intron-Distal3.431034.70224K562KHSRP
chr46918835369188406-intron-Distal,intron-Proximal4.0803411.21209HepG2BCLAF1
chr46919911869199167-intron-Distal,intron-Proximal4.229084.77050HepG2SF3B4
chr46918835569188418-intron-Distal,intron-Proximal3.442153.05460HepG2PPIG
chr46918410469184196-intron-Distal,intron-Proximal3.684883.18246K562PRPF8
chr46918779469187831-intron-Distal3.615795.36986K562RBM15
chr46919840769198484-intron-Distal,intron-Proximal3.694063.26999K562KHSRP
chr46921529269215356-intron-Distal3.193409.08642K562PRPF8
chr46919898369199020-intron-Distal,intron-Proximal4.506984.00320K562AQR
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for YTHDC1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for YTHDC1 is not available on ENCORE database.

  • 48 RBPs can affect the levels of YTHDC1.  








The Knockdown/knockout RNA-Seq assay for YTHDC1 is not available on ENCORE database.





48 RBPs can affect the gene expression of YTHDC1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
YTHDC1ENSG00000083896.81294.929701813.71490-0.486101.973701.51490HepG2AKAP1
YTHDC1ENSG00000083896.81458.191201871.20980-0.359802.349801.38650HepG2AKAP8
YTHDC1ENSG00000083896.81428.570401965.98340-0.460702.409101.69840HepG2CNOT7
YTHDC1ENSG00000083896.81033.710801301.37550-0.332203.333502.06190HepG2DDX1
YTHDC1ENSG00000083896.81081.802601276.05260-0.238302.008001.39880HepG2DNAJC21
YTHDC1ENSG00000083896.81011.967401264.88030-0.321804.321603.53960HepG2DNAJC2
YTHDC1ENSG00000083896.81979.398401543.747800.358501.941401.35840HepG2EIF4B
YTHDC1ENSG00000083896.81307.49120980.203800.415503.764502.85590HepG2FUBP3
YTHDC1ENSG00000083896.81231.625101647.13030-0.419401.904101.37330HepG2NCBP2
YTHDC1ENSG00000083896.81641.723801414.497700.214802.164001.47270HepG2PRPF4
YTHDC1ENSG00000083896.81261.494701553.46120-0.300403.324102.73540HepG2PTBP1
YTHDC1ENSG00000083896.81519.046201940.41520-0.353203.193402.55970HepG2PUF60
YTHDC1ENSG00000083896.81395.750901668.39530-0.257403.212202.56000HepG2PUS1
YTHDC1ENSG00000083896.82383.807701996.639300.255602.784202.26500HepG2RBM22
YTHDC1ENSG00000083896.81462.176801974.37020-0.433302.673601.88670HepG2RPS3A
YTHDC1ENSG00000083896.83084.359102166.384700.509603.614802.84020HepG2SF3A3
YTHDC1ENSG00000083896.81227.653701478.31500-0.268103.589602.87290HepG2SMN1
YTHDC1ENSG00000083896.82980.207902255.141400.402108.869908.11280HepG2SRFBP1
YTHDC1ENSG00000083896.82199.532801958.015500.167701.773801.34080HepG2SSB
YTHDC1ENSG00000083896.81100.294101395.59510-0.343004.362503.68610HepG2TRIM56
YTHDC1ENSG00000083896.82523.030601686.659300.580907.064306.07050HepG2U2AF1
YTHDC1ENSG00000083896.81572.217801854.89430-0.238502.602802.01950HepG2UTP3
YTHDC1ENSG00000083896.81621.947801395.906400.216402.499001.85530HepG2ZC3H8
YTHDC1ENSG00000083896.83300.358402352.107500.4886012.1375011.04160K562AGGF1
YTHDC1ENSG00000083896.83205.441302447.510600.389104.455703.61970K562AKAP8L
YTHDC1ENSG00000083896.84285.717802790.864800.618709.812508.81150K562AQR
YTHDC1ENSG00000083896.83028.918702568.096200.238002.859001.93220K562ATP5C1
YTHDC1ENSG00000083896.81244.563001478.61030-0.248602.542701.62580K562BCLAF1
YTHDC1ENSG00000083896.81896.975701487.115000.351103.159502.28520K562EIF4A3
YTHDC1ENSG00000083896.81659.794102175.03860-0.390003.728802.73320K562FIP1L1
YTHDC1ENSG00000083896.82348.804401752.998200.422002.704702.00770K562G3BP2
YTHDC1ENSG00000083896.81659.780402052.68770-0.306502.615901.84220K562GPKOW
YTHDC1ENSG00000083896.82043.211902789.32510-0.449105.665704.57980K562GRSF1
YTHDC1ENSG00000083896.81201.045701497.56900-0.318302.607902.02610K562HNRNPC
YTHDC1ENSG00000083896.82346.952602948.86140-0.329402.883302.07160K562HSPD1
YTHDC1ENSG00000083896.83407.892302597.293600.391804.785603.64700K562KIF1C
YTHDC1ENSG00000083896.81657.137302010.08000-0.278602.447901.58540K562MATR3
YTHDC1ENSG00000083896.81510.508302003.67300-0.407604.404003.28150K562METAP2
YTHDC1ENSG00000083896.83243.048002039.459900.669105.301703.94080K562NAA15
YTHDC1ENSG00000083896.81926.105302335.67980-0.278205.105804.13560K562NSUN2
YTHDC1ENSG00000083896.82124.806603062.32410-0.527302.612601.42300K562PABPC1
YTHDC1ENSG00000083896.82018.871402469.12890-0.290502.245801.50830K562PPIG
YTHDC1ENSG00000083896.81748.593201242.052300.493405.066904.05310K562PRPF8
YTHDC1ENSG00000083896.84193.689702427.000300.7889014.1416012.95580K562PUS1
YTHDC1ENSG00000083896.83534.562102364.960500.579609.254708.19270K562RBM15
YTHDC1ENSG00000083896.81421.082901759.97680-0.308602.671201.64260K562SRSF4
YTHDC1ENSG00000083896.82116.512901754.862400.270202.535701.76640K562U2AF2
YTHDC1ENSG00000083896.82147.644702476.57450-0.205602.465401.78600K562UPF1
YTHDC1ENSG00000083896.81679.662902119.12060-0.335303.366202.40470K562WDR3
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for YTHDC1 is not available on ENCORE database.





8 RBPs can affect the splicing of YTHDC1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEYTHDC1ENSG00000083896.8chr4-6920216569202258691990256919911569202744692031680.052000.000010.00048includedK562SRSF1
SEYTHDC1ENSG00000083896.8chr4-691985116919856569197820691979156919902569199197-0.087000.000500.00673excludedK562AQR
SEYTHDC1ENSG00000083896.8chr4-691858406918592369184543691845806918846669188633-0.084000.000010.00015excludedK562AQR
SEYTHDC1ENSG00000083896.8chr4-691957196919583769189856691899416919591969196028-0.064000.000010.00027excludedK562AQR
SEYTHDC1ENSG00000083896.8chr4-6920216569202258691990256919911569202744692031680.086000.000040.00833includedHepG2PCBP2
SEYTHDC1ENSG00000083896.8chr4-6919851169198565691978206919791569199025691991150.089000.000260.06883includedK562PPIL4
SEYTHDC1ENSG00000083896.8chr4-691959196919602869195719691958376919782069197915-0.082000.000300.00729excludedK562U2AF2
SEYTHDC1ENSG00000083896.8chr4-6918708969187214691858406918592369188466691886330.065000.000480.01542includedK562RBM15
SEYTHDC1ENSG00000083896.8chr4-691858406918592369184543691845806918708969187214-0.053000.003600.07118excludedK562RBM15
SEYTHDC1ENSG00000083896.8chr4-6918708969187214691858406918592369188466691886330.052000.000780.09307includedK562ZC3H8
A3SSYTHDC1ENSG00000083896.8chr4-6918846669188696691884666918863369189856691900180.065000.000010.00006longerK562AQR
A3SSYTHDC1ENSG00000083896.8chr4-6918985669190079691898566918994169195719691958720.236000.000000.00000longerK562AQR
A3SSYTHDC1ENSG00000083896.8chr4-6918440769184471691844076918444769184543691847520.136000.001390.00932longerK562AQR
A3SSYTHDC1ENSG00000083896.8chr4-6920400069204138692040006920410269215443692154710.077000.000160.00137longerK562AQR
A3SSYTHDC1ENSG00000083896.8chr4-6918584069185960691858406918592369188466691886330.216000.000000.00000longerK562AQR
A3SSYTHDC1ENSG00000083896.8chr4-6919591969196139691959196919602869197820691979770.102000.000000.00000longerK562AQR
A3SSYTHDC1ENSG00000083896.8chr4-6918454369184670691845436918458069185840691859230.124000.000000.00000longerK562AQR
A3SSYTHDC1ENSG00000083896.8chr4-6918200969182208691820096918216669184236691842990.053000.000000.00004longerK562AQR
RIYTHDC1ENSG00000083896.8chr4-6918424669184439691842466918429969184407691844390.060000.000150.00256includedK562RBM15
RIYTHDC1ENSG00000083896.8chr4-6918440769184651691844076918444769184543691846510.291000.000000.00000includedK562AQR
MXEYTHDC1ENSG00000083896.8chr4-6918985669189941691957196919583769188466691886336919591969196028-0.185000.000000.000222includedK562U2AF1
MXEYTHDC1ENSG00000083896.8chr4-69195719691958726919591969196065691898566918994169197820691979150.086000.000000.000031includedK562AQR
MXEYTHDC1ENSG00000083896.8chr4-69195719691958726919591969196105691898566918994169197820691979150.083000.000000.000031includedK562AQR
MXEYTHDC1ENSG00000083896.8chr4-69195719691958726919591969196073691898566918994169197820691979150.074000.000010.000111includedK562AQR
MXEYTHDC1ENSG00000083896.8chr4-69195719691958726919591969196139691898566918994169197820691979150.088000.000000.000011includedK562AQR
MXEYTHDC1ENSG00000083896.8chr4-69184543691847526918584069185960691844076918444769188466691886330.081000.000010.000141includedK562AQR
MXEYTHDC1ENSG00000083896.8chr4-69188466691886336918985669189941691858406918592369195719691958370.104000.015830.091421includedK562AQR
MXEYTHDC1ENSG00000083896.8chr4-69184543691845806918584069185960691844076918444769188466691886330.056000.000010.000211includedK562AQR
MXEYTHDC1ENSG00000083896.8chr4-69185840691859236918846669188696691845436918458069189856691899410.080000.000010.000211includedK562AQR
MXEYTHDC1ENSG00000083896.8chr4-69184543691846246918584069185960691844076918444769188466691886330.075000.000010.000131includedK562AQR
MXEYTHDC1ENSG00000083896.8chr4-69184407691846246918584069185960691842366918429969188466691886330.065000.000200.002201includedK562AQR
MXEYTHDC1ENSG00000083896.8chr4-69195719691958376919591969196065691898566918994169197820691979150.077000.000010.000101includedK562AQR
MXEYTHDC1ENSG00000083896.8chr4-69195719691958376919591969196105691898566918994169197820691979150.074000.000010.000111includedK562AQR
MXEYTHDC1ENSG00000083896.8chr4-69195719691958376919591969196073691898566918994169197820691979150.066000.000020.000331includedK562AQR
MXEYTHDC1ENSG00000083896.8chr4-69195719691958376919591969196139691898566918994169197820691979150.079000.000000.000041includedK562AQR
MXEYTHDC1ENSG00000083896.8chr4-69188466691886746918985669189998691858406918592369195719691957910.099000.000000.000021includedK562AQR
MXEYTHDC1ENSG00000083896.8chr4-69188466691886746918985669189982691858406918592369195719691957910.140000.000000.000001includedK562AQR
MXEYTHDC1ENSG00000083896.8chr4-69184407691844716918584069185960691842366918429969188466691886330.055000.000200.002271includedK562AQR
MXEYTHDC1ENSG00000083896.8chr4-69184407691844476918584069185960691842366918429969188466691886330.068000.000050.000701includedK562AQR
MXEYTHDC1ENSG00000083896.8chr4-6918454369184752691858406918592369184407691844476918846669188633-0.152000.000550.005432includedK562AQR
MXEYTHDC1ENSG00000083896.8chr4-6918454369184580691858406918592369184407691844476918846669188633-0.146000.000490.004902includedK562AQR
MXEYTHDC1ENSG00000083896.8chr4-6918454369184624691858406918592369184407691844476918846669188633-0.148000.000760.007162includedK562AQR
MXEYTHDC1ENSG00000083896.8chr4-6918440769184624691858406918592369184236691842996918846669188633-0.228000.000000.000022includedK562AQR
MXEYTHDC1ENSG00000083896.8chr4-6918440769184471691858406918592369184236691842996918846669188633-0.212000.000000.000062includedK562AQR
MXEYTHDC1ENSG00000083896.8chr4-6918440769184447691858406918592369184236691842996918846669188633-0.171000.000200.002212includedK562AQR
MXEYTHDC1ENSG00000083896.8chr4-6918423669184299691845436918458069182031691821666918584069185923-0.101000.003150.024392includedK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for YTHDC1 is not avaliable on ENCORE database.