USP33

General Information

Gene Name : USP33
Gene ID : ENSG00000077254.14
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: USP33)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	USP33	ENSG00000077254.14	22.54	22.33	22.43	ENCSR000AEF
HepG2	USP33	ENSG00000077254.14	14.57	27.15	20.86	ENCSR985KAT
K562	USP33	ENSG00000077254.14	32.92	31.38	32.15	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for USP33 is not avaliable on ENCORE database.

Proteins bound to RNA

USP33 RNA is bound by 21 proteins.

CanvasJS.com

eCLIP assay for USP33 is not avaliable on ENCORE database.

21 proteins are bound to USP33 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr1	78162322	78162404	-	3'-UTR,intron-Distal	3.52101	14.43961	K562	PUM2
chr1	78196341	78196409	-	CDS,intron-Distal	4.59941	12.86440	HepG2	BCLAF1
chr1	78187515	78187553	-	CDS,intron-Distal,intron-Proximal	5.72962	12.19672	HepG2	BCLAF1
chr1	78204962	78205027	-	CDS,intron-Distal,intron-Proximal	4.29851	11.55759	HepG2	BCLAF1
chr1	78204907	78204961	-	CDS,intron-Distal,intron-Proximal	4.76808	10.73241	K562	PRPF8
chr1	78225133	78225229	-	intron-Distal,intron-Proximal	4.27842	10.31219	K562	EXOSC5
chr1	78178884	78178959	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.97055	9.08790	HepG2	BCLAF1
chr1	78224835	78224912	-	intron-Distal	3.89019	8.99331	K562	HNRNPM
chr1	78194273	78194361	-	CDS,intron-Distal	3.10920	8.01569	HepG2	BCLAF1
chr1	78189013	78189057	-	CDS,intron-Distal,intron-Proximal	4.30181	7.97334	HepG2	BCLAF1
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 61 entries

eCLIP assay for USP33 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for USP33 is not available on ENCORE database.
54 RBPs can affect the levels of USP33.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for USP33 is not available on ENCORE database.

54 RBPs can affect the gene expression of USP33 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
USP33	ENSG00000077254.10	603.40340	1039.28920	-0.78440	15.74850	14.39890	HepG2	HNRNPU
USP33	ENSG00000077254.10	612.27440	1018.89060	-0.73470	14.21670	13.07970	HepG2	TRIM56
USP33	ENSG00000077254.10	1484.82070	2479.83480	-0.74000	14.50830	13.05320	K562	PTBP1
USP33	ENSG00000077254.10	789.29770	1416.02480	-0.84320	13.98170	12.78270	HepG2	PUF60
USP33	ENSG00000077254.10	2263.23560	1483.98470	0.60880	12.45170	11.51350	HepG2	RBM22
USP33	ENSG00000077254.10	712.38990	1124.50400	-0.65850	11.71900	10.62150	HepG2	UTP3
USP33	ENSG00000077254.10	1878.52450	1362.03620	0.46370	8.20180	7.48740	HepG2	SRSF1
USP33	ENSG00000077254.10	1564.62630	2460.46940	-0.65310	8.63480	7.29510	K562	TARDBP
USP33	ENSG00000077254.10	819.56650	1161.57950	-0.50320	8.22080	7.25610	HepG2	PUS1
USP33	ENSG00000077254.10	2046.85740	2842.87230	-0.47390	6.30550	5.15860	K562	GRSF1
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 61 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for USP33 is not available on ENCORE database.

21 RBPs can affect the splicing of USP33 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	FDR	is_included	Cell Line	Affected by RBP
SE	USP33	ENSG00000077254.10	chr1	-	78212083	78212241			78211105	78211284	78225327	78225374	0.89500	0.00000	included	HepG2	HNRNPM
SE	USP33	ENSG00000077254.10	chr1	-	78206561	78206624			78205082	78205102	78207060	78207114	-0.08100	0.00005	excluded	K562	AQR
SE	USP33	ENSG00000077254.10	chr1	-	78195544	78195623			78193979	78194397	78196302	78196416	-0.10500	0.00000	excluded	K562	AQR
SE	USP33	ENSG00000077254.10	chr1	-	78181426	78181553			78180298	78180468	78183551	78183732	-0.07500	0.00000	excluded	K562	AQR
SE	USP33	ENSG00000077254.10	chr1	-	78212083	78212241			78211105	78211284	78225327	78225374	0.96600	0.00000	included	K562	HNRNPM
SE	USP33	ENSG00000077254.10	chr1	-	78206561	78206624			78204949	78205102	78207060	78207114	-0.19100	0.00001	excluded	K562	U2AF2
SE	USP33	ENSG00000077254.10	chr1	-	78211105	78211284			78207301	78207433	78225327	78225537	-0.21000	0.00030	excluded	K562	ZC3H8
MXE	USP33	ENSG00000077254.10	chr1	-	78167053	78167148	78177431	78177571	78163547	78163616	78178884	78178966	0.20500	0.00000	1included	K562	AQR
MXE	USP33	ENSG00000077254.10	chr1	-	78167053	78167156	78177431	78177540	78163547	78163616	78183551	78183732	0.19400	0.00000	1included	K562	AQR
MXE	USP33	ENSG00000077254.10	chr1	-	78167053	78167156	78177431	78177571	78163547	78163616	78178884	78178966	0.20100	0.00000	1included	K562	AQR

Showing 1 to 10 of 51 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

USP33

General Information

Functions

Localization

Domains (AlphaFold: USP33)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for USP33 is not avaliable on ENCORE database.

21 proteins are bound to USP33 RNA:

eCLIP assay for USP33 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for USP33 is not available on ENCORE database.

54 RBPs can affect the gene expression of USP33 :

The Knockdown/knockout RNA-Seq assay for USP33 is not available on ENCORE database.

21 RBPs can affect the splicing of USP33 :

The Knockdown/knockout RNA-Seq assay for USP33 is not avaliable on ENCORE database.