UFC1

General Information

Gene Name       : UFC1
Gene ID             : ENSG00000143222.11
Essential Gene : Yes

Functions

Localization

Domains (AlphaFold: UFC1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878UFC1ENSG00000143222.11148.22143.92146.07ENCSR000AEF
HepG2UFC1ENSG00000143222.1183.2691.5087.38ENCSR985KAT
K562UFC1ENSG00000143222.11120.42128.02124.22ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for UFC1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • UFC1 RNA is bound by 4 proteins.  







eCLIP assay for UFC1 is not avaliable on ENCORE database.





4 proteins are bound to UFC1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr1161128514161128562+3'-UTR4.1806010.95110K562PABPC4
chr1161128499161128638+3'-UTR3.116453.09884K562LIN28B
chr1161128279161128325+3'-UTR3.659835.52950K562PABPC4
chr1161128201161128219+CDS,intron-Proximal3.746315.73361K562YBX3
chr1161127461161127484+CDS,intron-Proximal5.851515.13070K562PUM2
chr1161123886161123910+CDS,intron-Proximal3.172165.51805K562YBX3
chr1161127069161127107+CDS3.185934.74027K562YBX3
chr1161126739161126807+CDS,intron-Proximal4.7949422.14739K562YBX3
chr1161127043161127069+CDS,intron-Proximal5.143819.56355K562YBX3
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for UFC1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for UFC1 is not available on ENCORE database.

  • 64 RBPs can affect the levels of UFC1.  








The Knockdown/knockout RNA-Seq assay for UFC1 is not available on ENCORE database.





64 RBPs can affect the gene expression of UFC1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
UFC1ENSG00000143222.71165.60720907.937200.360302.164601.32900HepG2ABCF1
UFC1ENSG00000143222.72143.545101517.674300.498003.969403.34940HepG2AKAP1
UFC1ENSG00000143222.71598.567501255.768100.348102.432801.69150HepG2ASCC1
UFC1ENSG00000143222.71032.573401270.45900-0.299103.367602.62290HepG2AUH
UFC1ENSG00000143222.71670.635301193.059700.485604.436003.46800HepG2CIRBP
UFC1ENSG00000143222.71024.72860787.874500.379103.124502.15220HepG2DDX24
UFC1ENSG00000143222.71931.298201453.860200.409603.201002.53440HepG2DDX3X
UFC1ENSG00000143222.7901.073701248.79460-0.470803.289602.62240HepG2DDX6
UFC1ENSG00000143222.7633.03090777.01510-0.295702.752902.10300HepG2DNAJC2
UFC1ENSG00000143222.7761.002901200.59720-0.657806.367505.48790HepG2EIF2S1
UFC1ENSG00000143222.71226.965701458.68310-0.249602.611102.02410HepG2ETF1
UFC1ENSG00000143222.71002.375501338.58840-0.417303.125202.38960HepG2FXR1
UFC1ENSG00000143222.7841.17830632.551200.411103.305302.27410HepG2HNRNPM
UFC1ENSG00000143222.7943.723801339.05510-0.504804.176203.37260HepG2MAGOH
UFC1ENSG00000143222.7601.561301346.57360-1.1625016.1387014.70830HepG2MATR3
UFC1ENSG00000143222.7980.62010741.996100.402203.248802.37490HepG2MSI2
UFC1ENSG00000143222.7937.189501227.56660-0.389402.636001.92990HepG2PABPC4
UFC1ENSG00000143222.7979.608801323.50710-0.434106.088805.24410HepG2PCBP1
UFC1ENSG00000143222.7894.722701346.77440-0.590009.826408.91980HepG2PTBP1
UFC1ENSG00000143222.71086.411001332.01840-0.294002.361901.74130HepG2PUM2
UFC1ENSG00000143222.7881.646801458.46960-0.7262012.6527011.45880HepG2QKI
UFC1ENSG00000143222.71305.53070831.015800.651603.621902.81810HepG2RAVER1
UFC1ENSG00000143222.71869.442201219.183700.6166011.9165010.99650HepG2RBM22
UFC1ENSG00000143222.7902.098801323.70030-0.553206.521205.52570HepG2RBM25
UFC1ENSG00000143222.7872.420901402.06470-0.6845013.3658012.21890HepG2SF3B4
UFC1ENSG00000143222.7989.382201204.10150-0.283403.035402.30480HepG2SLBP
UFC1ENSG00000143222.7593.37130810.66440-0.450202.053501.38470HepG2SNRNP70
UFC1ENSG00000143222.71189.000901377.01350-0.211802.095801.64070HepG2SRFBP1
UFC1ENSG00000143222.71076.37440783.946900.457302.717401.72610HepG2SRSF3
UFC1ENSG00000143222.7870.854601058.16100-0.281102.771702.07540HepG2SRSF7
UFC1ENSG00000143222.7848.815301190.66540-0.488207.522206.69360HepG2SRSF9
UFC1ENSG00000143222.71472.092001195.556900.300103.613503.04430HepG2SSB
UFC1ENSG00000143222.71082.73550770.939000.489903.528102.77760HepG2SUPV3L1
UFC1ENSG00000143222.71047.554001315.55960-0.328703.383402.77300HepG2TAF15
UFC1ENSG00000143222.7899.415301208.69830-0.426404.232303.20690HepG2TIA1
UFC1ENSG00000143222.7710.77700849.71130-0.257601.733401.31790HepG2TIAL1
UFC1ENSG00000143222.7725.81070857.33830-0.240301.943801.45510HepG2TRIM56
UFC1ENSG00000143222.7996.46770784.261200.345402.185001.61990HepG2U2AF1
UFC1ENSG00000143222.7873.292501298.62380-0.572404.331803.27120HepG2UBE2L3
UFC1ENSG00000143222.71374.07360822.515200.7402016.2792015.00350HepG2UTP3
UFC1ENSG00000143222.71095.12270758.904400.529004.427403.51740HepG2XRN2
UFC1ENSG00000143222.72147.315001900.581200.176001.795401.31770K562AGGF1
UFC1ENSG00000143222.72776.708501977.644300.489506.147605.14780K562AKAP8L
UFC1ENSG00000143222.72693.904002075.031500.376505.555204.20830K562ATP5C1
UFC1ENSG00000143222.7991.230301236.27220-0.318702.661701.62510K562CSTF2
UFC1ENSG00000143222.72589.761202128.065400.283203.584702.57100K562DKC1
UFC1ENSG00000143222.72408.274201667.688900.530006.615505.26090K562FIP1L1
UFC1ENSG00000143222.71421.393901213.084200.228502.104301.56370K562FXR1
UFC1ENSG00000143222.73423.095702627.186200.381704.387003.43970K562GRSF1
UFC1ENSG00000143222.71146.919401430.17860-0.318402.573301.99490K562HNRNPC
UFC1ENSG00000143222.72036.990801371.830300.570205.619704.22970K562HNRNPM
UFC1ENSG00000143222.71620.284901996.32980-0.301103.428202.43590K562HNRNPU
UFC1ENSG00000143222.73534.800202260.846400.644709.738708.27270K562HSPD1
UFC1ENSG00000143222.72711.680902098.762900.369504.373503.30510K562KIF1C
UFC1ENSG00000143222.71225.527601519.40020-0.310102.703101.79260K562MATR3
UFC1ENSG00000143222.72999.470702351.146200.351203.697702.62120K562MBNL1
UFC1ENSG00000143222.72224.075201647.984300.432402.888001.98350K562NAA15
UFC1ENSG00000143222.72227.515701320.611500.754103.762202.55830K562PABPN1
UFC1ENSG00000143222.71383.019701849.01580-0.418903.293902.38710K562PCBP3
UFC1ENSG00000143222.71094.819301418.28810-0.373503.601902.68150K562POLR2G
UFC1ENSG00000143222.72577.198301893.347600.444804.688103.58020K562PPIG
UFC1ENSG00000143222.71775.305601347.940000.397203.424102.58770K562PRPF8
UFC1ENSG00000143222.73001.847701961.256100.614008.710307.79550K562PUS1
UFC1ENSG00000143222.72723.161001910.968900.510909.280508.21700K562RBM15
UFC1ENSG00000143222.71915.812001422.538500.429405.454504.29390K562SYNCRIP
UFC1ENSG00000143222.71693.724202006.65750-0.244603.029402.27820K562UPF1
UFC1ENSG00000143222.73685.023602844.106500.373604.279502.66470K562WRN
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for UFC1 is not available on ENCORE database.





19 RBPs can affect the splicing of UFC1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEUFC1ENSG00000143222.7chr1+161127910161128001161127406161127483161128201161128646-0.103000.000010.00050excludedK562SRSF1
SEUFC1ENSG00000143222.7chr1+161127910161128001161127406161127483161128201161128646-0.111000.000040.00139excludedK562SF3B4
SEUFC1ENSG00000143222.7chr1+161127910161128001161127406161127483161128201161128646-0.065000.000250.09592excludedK562SMNDC1
SEUFC1ENSG00000143222.7chr1+161127910161128001161127406161127483161128201161128646-0.146000.000000.00008excludedHepG2U2AF1
SEUFC1ENSG00000143222.7chr1+161127910161128001161127406161127483161128201161128646-0.123000.000000.00000excludedK562AKAP8L
SEUFC1ENSG00000143222.7chr1+161127910161128001161127406161127483161128201161128646-0.065000.000910.08819excludedK562FMR1
SEUFC1ENSG00000143222.7chr1+161127910161128001161127406161127483161128201161128646-0.092000.000390.00630excludedHepG2U2AF2
SEUFC1ENSG00000143222.7chr1+161127910161128001161127406161127483161128201161128646-0.133000.000000.00000excludedK562PUS1
SEUFC1ENSG00000143222.7chr1+161127910161128001161127388161127483161128201161128646-0.065000.000010.00318excludedK562LARP4
SEUFC1ENSG00000143222.7chr1+161127910161128001161127406161127483161128201161128646-0.133000.000000.00004excludedK562U2AF1
SEUFC1ENSG00000143222.7chr1+1611279101611280011611274061611274831611282011611286460.065000.000030.01018includedHepG2HNRNPUL1
SEUFC1ENSG00000143222.7chr1+161127910161128001161127406161127483161128201161128646-0.073000.000210.00868excludedHepG2SF3A3
SEUFC1ENSG00000143222.7chr1+161127910161128001161127406161127483161128201161128646-0.065000.000000.00103excludedK562HNRNPUL1
SEUFC1ENSG00000143222.7chr1+1611279101611280011611274061611274831611282011611286460.061000.000170.02842includedHepG2RBFOX2
SEUFC1ENSG00000143222.7chr1+161127910161128001161127406161127483161128201161128646-0.078000.000000.00002excludedK562UTP18
SEUFC1ENSG00000143222.7chr1+161127910161128001161127406161127483161128201161128646-0.249000.000000.00000excludedK562U2AF2
SEUFC1ENSG00000143222.7chr1+161127910161128001161127406161127483161128201161128646-0.060000.002930.08434excludedK562TARDBP
SEUFC1ENSG00000143222.7chr1+161127910161128001161127406161127483161128201161128646-0.071000.000000.00008excludedK562RBM15
SEUFC1ENSG00000143222.7chr1+161127910161128001161127406161127483161128201161128646-0.084000.000000.00001excludedK562AGGF1
SEUFC1ENSG00000143222.7chr1+161127910161128001161127406161127483161128201161128646-0.063000.001510.05547excludedK562SF3B1
SEUFC1ENSG00000143222.7chr1+161127910161128001161127406161127483161128201161128646-0.061000.000000.00110excludedK562ZC3H8
RIUFC1ENSG00000143222.7chr1+161123541161123910161123541161123639161123715161123910-0.083000.008030.06500excludedK562AKAP8L
RIUFC1ENSG00000143222.7chr1+1611235411611239101611235411611236391611237151611239100.078000.000330.00247includedK562AQR
MXEUFC1ENSG00000143222.7chr1+161127043161127107161127406161127483161126739161126807161128201161128472-0.067000.000010.004072includedK562LARP4
MXEUFC1ENSG00000143222.7chr1+161127043161127136161127406161127483161126739161126807161128201161128472-0.064000.000150.007742includedK562RBM15
MXEUFC1ENSG00000143222.7chr1+161127043161127107161127406161127483161126739161126807161128201161128472-0.112000.000000.000002includedK562PUS1
MXEUFC1ENSG00000143222.7chr1+161127043161127107161127388161127483161126739161126807161128201161128472-0.061000.000020.002792includedK562UTP18
MXEUFC1ENSG00000143222.7chr1+161127043161127107161127406161127483161126739161126807161128201161128472-0.067000.000020.002792includedK562UTP18
MXEUFC1ENSG00000143222.7chr1+161127043161127136161127406161127483161126739161126807161128201161128472-0.103000.000760.029912includedHepG2SF3A3
MXEUFC1ENSG00000143222.7chr1+161127043161127107161127406161127483161126739161126807161128201161128472-0.059000.006590.080182includedK562SF3B4
MXEUFC1ENSG00000143222.7chr1+161127043161127107161127388161127483161126739161126807161128201161128472-0.093000.000000.000002includedK562AKAP8L
MXEUFC1ENSG00000143222.7chr1+161127043161127107161127406161127483161126739161126807161128201161128472-0.100000.000000.000002includedK562AKAP8L
MXEUFC1ENSG00000143222.7chr1+161127043161127107161127406161127483161126739161126807161128201161128472-0.060000.000070.003632includedK562HNRNPUL1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for UFC1 is not avaliable on ENCORE database.